mRNA_C-linearis_contig11.1369.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1369.1 vs. uniprot
Match: D8LKJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ3_ECTSI) HSP 1 Score: 396 bits (1017), Expect = 3.180e-130 Identity = 252/406 (62.07%), Postives = 284/406 (69.95%), Query Frame = 1
Query: 1 MSWAT-RPSSGGXXXXXXXXXXXXXXXXXAVTACEQRRP--KTSVQRKAHQMVEGLKEPPTPPRDIPSTADVDSLEQALVVSIRTAGLKPGRENQLVDEAARLRRRRKAWLEETEIVLREWVGHANLLWELHKQESAKFNESRRAREKLHARSLANLKKEHENERERVYAAVSEERDASVAQLRAAQEAQELWAKTQQEKAXXXXXRENNRTTARLRRDAEQHARSVKEVFEAEYADRMAAALERSEEAAALSSTAHKKAARXEATARRLEAQLVEAAERNRRMERLFQTQNGAVKELKEGLENRARRLARHLDEEQASNDKDRETHASELRAVKQQWKGELRTVDGRVRAIVGVKDQATQQAIERLTEGLEDARQRAETAEALLEELQRGVCPTLASTAVSHRHS 1209
MSWAT RPSS G +R + SV+R+A +V GL+EPP+PPRDIP T DVD+LEQALVVSIRTAGLKPGRENQLVDEA RLRRRRKAWLEE EIV REWVGHANLLWELHKQE +K ++S+R RE+ HARSLANLK+ E ERER AAV QEAQELWAK ++++ RE RTTARLRRD+EQHA SVKE EA YADRMAAALE+SEE+AAL STA KKA R EAT RRLEAQL EAAERNRRME L QTQN AVKELKE LE RARRLAR L+E++AS++K+RE HASEL VK Q AIERLT+GL+ +RQRAETAEALLEELQRG+CP + SHRHS
Sbjct: 1 MSWATSRPSSAGGFGPAPRNRVRSSSGGPPAQGTRSKRTSARASVERRATAVVNGLREPPSPPRDIPPTNDVDALEQALVVSIRTAGLKPGRENQLVDEATRLRRRRKAWLEEAEIVFREWVGHANLLWELHKQEVSKLSDSQRERERQHARSLANLKERLEEERERTRAAVVXXXXXXXXXXXXXQEAQELWAKAHRDESAAAAKREIARTTARLRRDSEQHASSVKETLEAAYADRMAAALEKSEESAALLSTAQKKAFRLEATTRRLEAQLAEAAERNRRMEHLSQTQNAAVKELKEDLEKRARRLARRLEEDKASHEKEREAHASELLTVKAQ-------------------------AIERLTDGLKSSRQRAETAEALLEELQRGICPPFVPGSGSHRHS 381 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1369.1 >prot_C-linearis_contig11.1369.1 ID=prot_C-linearis_contig11.1369.1|Name=mRNA_C-linearis_contig11.1369.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=418bp MSWATRPSSGGGVVPASRRKARSSGGPPAVTACEQRRPKTSVQRKAHQMVback to top mRNA from alignment at C-linearis_contig11:3189463..3194586- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1369.1 ID=mRNA_C-linearis_contig11.1369.1|Name=mRNA_C-linearis_contig11.1369.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5124bp|location=Sequence derived from alignment at C-linearis_contig11:3189463..3194586- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:3189463..3194586- >mRNA_C-linearis_contig11.1369.1 ID=mRNA_C-linearis_contig11.1369.1|Name=mRNA_C-linearis_contig11.1369.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2508bp|location=Sequence derived from alignment at C-linearis_contig11:3189463..3194586- (Chordaria linearis ClinC8C monoicous)back to top |