prot_C-linearis_contig11.1359.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1359.1
Unique Nameprot_C-linearis_contig11.1359.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length726
Homology
BLAST of mRNA_C-linearis_contig11.1359.1 vs. uniprot
Match: D7FM66_ECTSI (WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) 3\'-5\' exonuclease/ nucleic acid binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM66_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 7.740e-85
Identity = 158/259 (61.00%), Postives = 186/259 (71.81%), Query Frame = 0
Query:  243 GILLAGVGVGGDVSRLEREYEQLRASG-VGGVVDLSEVAKRKVVPDRRRRGMWSLADLCDELLQLELRKPSSLRTGSWEKQPLSVDQLFYAAADAFAGSRLWQVMRGMPDLVLRRAEANAPRRD-TTAVVVPPSSSTITGDAAGSGGKGKVEVEVKAKIEKKGCQQPALGGK--ATSSSDANDANKGSPTSRVRPRLPQSKLETHRLWHEDGLPVDAVAELRCNKASTVRGYLSDCIEAGLPYD-----WSRLGIDPTK 492
            G+L +  GVGGDV+RLEREY+QLRA G VGGVVDLSEVAKRKV P+RRRRGMWSLADLC E+L+LEL+KP+SLRTGSWEK+PLSVDQLFYAAADA+AG RLWQ M  MPDLVL+R++AN PR + T+A    P    +   AAG  GKG+    V A        QPA  G+  AT+S +A            RPRLP SKLETHRLWHEDGL VDAVAE+RCNKA+TVRGYLS  +  GL  D     W+ L +D ++
Sbjct:    3 GLLCSRRGVGGDVNRLEREYDQLRAGGGVGGVVDLSEVAKRKVAPERRRRGMWSLADLCAEVLELELKKPASLRTGSWEKRPLSVDQLFYAAADAYAGLRLWQTMHEMPDLVLQRSDANGPRVEGTSAAAGSPRRCDVNAAAAGGEGKGQARGGVDA--------QPAXXGQEMATASRNAETT--------TRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSADLPNGLIVDRLHRSWASLRLDTSR 245          
BLAST of mRNA_C-linearis_contig11.1359.1 vs. uniprot
Match: A0A6H5KKF2_9PHAE (HTH_40 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF2_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 2.950e-49
Identity = 171/430 (39.77%), Postives = 210/430 (48.84%), Query Frame = 0
Query:  346 MRGMPDLVLRRAEANAPR-RDTTAVVVPPSSSTITGDAAGSGGKGKVEVEVKAKIEKKGCQQPALGGK--ATSSSDANDANKGSPTSRVRPRLPQSKLETHRLWHEDGLPVDAVAELRCNKASTVRGYLSDCIEAGLPYDWSRLGIDPTKEGKIVGALLAATADHPPAATGRDPTTASATR--GKNKDKEPGASSCGSGSDGKNPAAPSACGAKPQTVPLAPSGSPVGGLQAAVLFPPTLA--------ATGTPGSCG-STSAAAAVGTAEGQRWEERGGNGPRSANVAKLRGVTPTAADMESECGYISEKGAHGDSTNG------------------------------GXXXXXXXNEAGAAR--VAPRAGAEDGAEGAKG-----AGET---GRWDSVRLKEVKELAPTAEYWEIRMVLARLKAGWC 721
            M  MPDLVL+R++AN  R  DT+A    P     T  AA S GKG+    V A+        PA GG+  AT+S +A            RPRLP SKLETHRLWHEDGL VDAVAE+RCNKA+TVRGYLSDCIEAGLPYDW+R+GID  +E +IV ALLAATA      +G+ P  A+A    G +K   P ASS        +P  P    AK +   +  + SP+  +  A    P+L+           TP + G S  A   VGT+ G                      TPT   ++  C  ++   A   S +G                              G       N    +   +   AG  DG  G  G     A ET   GRWDSVRLK+VKELAP AEYWEIRMVLARLK+G+C
Sbjct:    1 MHEMPDLVLQRSDANGSRVEDTSAAAGSPRRCDGTAAAACSEGKGQARGGVDAR--------PARGGQEMATASRNAETT--------TRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSDCIEAGLPYDWTRVGIDADEEEEIVTALLAATAG-----SGKQPAVAAAGGDCGPSKAAAPAASS------ETSPKIPDHHKAKAEATNVGVAVSPM--MPLASNSRPSLSDLQVDDGIGLATPTTSGRSAPAVEPVGTSCGHN-------------------TTPTTPVLKGPCSAVAAAAAASHSADGVVLXXXXXXXXXXXXXXXXXXXXXXXXXXDGSATSSTANNRTDSNPGMDESAGWSDGDAGRHGTLAGTASETCAAGRWDSVRLKDVKELAPRAEYWEIRMVLARLKSGYC 382          
BLAST of mRNA_C-linearis_contig11.1359.1 vs. uniprot
Match: A0A7S0A073_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A073_9DINO)

HSP 1 Score: 105 bits (263), Expect = 8.930e-22
Identity = 93/288 (32.29%), Postives = 127/288 (44.10%), Query Frame = 0
Query:  238 VLSDPGILLAGVGVGGDVSRLEREYE---------------QLRASGVG-----GVVDLSEVAKRKVVPDRRRRGMWSLADLCDELLQLELRKPSSLRTGSWEKQPLSVDQLFYAAADAFAGSRLWQVMRGMPDLVLRRAEANAPRRDTTAVVVPPSSSTITGDAAGSGGKGKVEVEVKAKIEKKGCQQPALGGKATSSSDANDANKGSPTSRVRPRLPQSKLETHRLWHEDGLPVDAVAELRCNKASTVRGYLSDCIEAGLPYDWSRLGIDPTKEGKIVGALLAATA 505
            +L  P +L  GVG  GD  +LER+Y                Q    G G     GV+DL+++A R +      R   SLA LC+ELL   L KP+ +R  +WE  PL+ +QL YAA DA+AG R +Q +R     V+    A A R+DT    +P + S     A                     C+   +G  A  S                  LP +K   +RL+ E+GL  D++AELR  + STV  YL+D I AG  Y+ +   I       I  AL AA A
Sbjct:    5 LLGRPDVLKVGVGAEGDAHKLERDYPWAGAPAACEKGGSEAQCHDPGRGRFRARGVLDLNDLACRVLGGKPGSRPKASLAALCEELLGCSLPKPADVRCSNWEAVPLTEEQLGYAATDAWAGLRCFQELRARSPEVVAEV-ATALRKDT----IPMAHSARKRPAPAEW-----------------CKSEQVGAVAVPSD-----------------LPPAKRCVYRLFFENGLAADSIAELRGIQTSTVLSYLADAITAGYAYNLADFEISAADWEAIAAALAAAPA 253          
BLAST of mRNA_C-linearis_contig11.1359.1 vs. uniprot
Match: A0A1Y1IE41_KLENI (Werner syndrome-like exonuclease n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IE41_KLENI)

HSP 1 Score: 103 bits (258), Expect = 2.960e-19
Identity = 81/278 (29.14%), Postives = 124/278 (44.60%), Query Frame = 0
Query:  225 HPAAAYLPESLVQVLSDPGILLAGVGVGGDVSRLEREYEQLRASGVGGVVDLSEVAKRKVVPDRRRRGMWSLADLCDELLQLELRKPSSLRTGSWEKQPLSVDQLFYAAADAFAGSRLWQVMRGMPDLVLRRAEANAPRRDTTAVVVPPSSSTITGDAAGSGGKGKVEVEVKAKIEKKGCQQPALGGKATSSSDANDANKGSPTSRVRPRLPQSKLETHRLWHEDGLPVDAVAELRCNKASTVRGYLSDCIEAGLPYDWSRLGIDPTKEGKIVGALLA 502
            H A + L  SL  +L +  +  AG G+ GD  +L R++       +GG+ DLS++A  ++ P    R  WSL  L  E +  ++ KP   R   WE+ PLS DQ  YAA DA+A  RL+QV+  +P    R      P+ +  ++V P             G +   E  + A        +P+                          L  SK++ HRL H DGL ++ +A  +  + +TV  YL +  +AGL Y W RLG+      +I  A+ A
Sbjct:  369 HIAHSGLTSSLRALLDEQSVGKAGAGIYGDAQKLRRDF----GVSMGGLRDLSDLANERLQPKDGPR-KWSLTALAQEAMLQQVEKPPKQRISDWERLPLSPDQRQYAATDAYASLRLYQVLMSLPAPPPRPILRPLPQSELNSLVNP-GFXXXPXXELXPGAEPTSEAWIPA------VPEPSY-------------------------LAPSKMDVHRL-HLDGLTIEEIAVKKGVRVTTVESYLVEATQAGLAYAWHRLGVSDAVRERIERAVKA 608          
BLAST of mRNA_C-linearis_contig11.1359.1 vs. uniprot
Match: A0A2Z6P1B5_TRISU (3'-5' exonuclease domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P1B5_TRISU)

HSP 1 Score: 94.4 bits (233), Expect = 8.980e-19
Identity = 50/122 (40.98%), Postives = 77/122 (63.11%), Query Frame = 0
Query:  231 LPESLVQVLSDPGILLAGVGVGGDVSRLEREYEQLRASGVGGVVDLSEVAKRKVVPDRRRRGMWSLADLCDELLQLELRKPSSLRTGSWEKQPLSVDQLFYAAADAFAGSRLWQVMRGMPDL 352
            +P++L  +L DP +L  G G+GGD +++ R+Y+      + GV DLS  A +K+  D  +   W LA L ++LL  +L+KPS +R G+WE   LS +QL YAA DAFA   L+Q ++ +PD+
Sbjct:   34 IPQNLQLLLEDPTVLKVGAGIGGDATKVSRDYD----ISIKGVEDLSFHANQKLGGDPHK---WGLASLTEKLLSKQLKKPSKIRMGNWETPFLSKEQLEYAATDAFASWFLYQTIKDLPDV 148          
BLAST of mRNA_C-linearis_contig11.1359.1 vs. uniprot
Match: A0A7S0ZVH3_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZVH3_NOCSC)

HSP 1 Score: 100 bits (248), Expect = 2.030e-18
Identity = 91/282 (32.27%), Postives = 125/282 (44.33%), Query Frame = 0
Query:  231 LPESLVQVLSDPGILLAGVGVGGDVSRLEREYEQLRASGVG-----GVVDLSEVAKRKV---VPDRRRRGMWSLADLCDELLQLELRKPSSLRTGSWEKQPLSVDQLFYAAADAFAGSRLWQVMRGMPDLVLRRAEANAPRRDTTAVVVPPSSSTITGDAAGSGGKGKVEVEV--KAKIEKKGCQQPALGGKATSSSDANDANKGSPTSRVRPRLPQSKLETHRLWHEDGLPVDAVAELRCNKASTVRGYLSDCIEAGLPYDWSRLGIDPTKEGKIVGALLA 502
            LP  L  +L++  ++  GVG  GD  +L  +Y      G        VVDL+EVA R +    P  R R   SL  LC ELL   L K   +R G+WE  PLS  Q+ YAA DA+AG R ++V+  +           AP+    ++            A  S GKG+       K K    GC    +  +A++  D                LP +K   HRL+ E+GL  D++AELR  +A TVR YL+D I AG  YD +   +       I  A  A
Sbjct:  217 LPGPLAALLANEDVIKVGVGAEGDAHKLAADYSLKVIDGTSPFRARSVVDLNEVAWRALHGAQPGTRERK--SLRTLCFELLSQNLAKDEEVRCGNWEAVPLSQTQVDYAATDAWAGYRCFEVLHSL-----------APKSLDASL------------ATSSFGKGEPSAPCVRKRKAPGDGCTSEPVA-EASTILD----------------LPPAKRLCHRLFCENGLTADSIAELRGVQAGTVRSYLADAIAAGHAYDLADFELSADDRTAITVAFAA 456          
BLAST of mRNA_C-linearis_contig11.1359.1 vs. uniprot
Match: A0A2Z6NBE9_TRISU (3'-5' exonuclease domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NBE9_TRISU)

HSP 1 Score: 94.4 bits (233), Expect = 1.120e-16
Identity = 50/122 (40.98%), Postives = 77/122 (63.11%), Query Frame = 0
Query:  231 LPESLVQVLSDPGILLAGVGVGGDVSRLEREYEQLRASGVGGVVDLSEVAKRKVVPDRRRRGMWSLADLCDELLQLELRKPSSLRTGSWEKQPLSVDQLFYAAADAFAGSRLWQVMRGMPDL 352
            +P++L  +L DP +L  G G+GGD +++ R+Y+      + GV DLS  A +K+  D  +   W LA L ++LL  +L+KPS +R G+WE   LS +QL YAA DAFA   L+Q ++ +PD+
Sbjct:  327 IPQNLQLLLEDPTVLKVGAGIGGDATKVSRDYD----ISIKGVEDLSFHANQKLGGDPHK---WGLASLTEKLLSKQLKKPSKIRMGNWETPFLSKEQLEYAATDAFASWFLYQTIKDLPDV 441          
BLAST of mRNA_C-linearis_contig11.1359.1 vs. uniprot
Match: V4MI48_EUTSA (3'-5' exonuclease domain-containing protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4MI48_EUTSA)

HSP 1 Score: 91.3 bits (225), Expect = 1.550e-16
Identity = 48/123 (39.02%), Postives = 77/123 (62.60%), Query Frame = 0
Query:  231 LPESLVQVLSDPGILLAGVGVGGDVSRLEREYEQLRASGVGGVVDLSEVAKRKVVPDRRRRGMWSLADLCDELLQLELRKPSSLRTGSWEKQPLSVDQLFYAAADAFAGSRLWQVMRGMPDLV 353
            +P+SL Q++ D  ++  G+G+ GD  +L  ++       +  V DLS++A +K+  D ++   W LA L + L+  EL KP+ +R G+WE QPLS +QL YAA DA+A   L+QV++ +PD V
Sbjct:  169 IPQSLQQLIEDSTLVKVGIGIDGDSVKLFHDH----GVSIKDVEDLSDLANKKIGGDSKK---WGLASLTETLVCKELLKPNRIRLGNWEVQPLSKEQLQYAATDAYASWHLYQVLKELPDAV 284          
BLAST of mRNA_C-linearis_contig11.1359.1 vs. uniprot
Match: A0A2K1JPS4_PHYPA (3'-5' exonuclease domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JPS4_PHYPA)

HSP 1 Score: 92.0 bits (227), Expect = 3.670e-16
Identity = 52/123 (42.28%), Postives = 73/123 (59.35%), Query Frame = 0
Query:  231 LPESLVQVLSDPGILLAGVGVGGDVSRLEREYEQLRASGVGGVVDLSEVAKRKVVPDRRRRGMWSLADLCDELLQLELRKPSSLRTGSWEKQPLSVDQLFYAAADAFAGSRLWQVMRGMPDLV 353
            +P SL  +L DP IL  GVG+ GDVS+L+R+Y+      + GVV+LSE+A +K+     R   WSL+ L   L   ++ K  ++R G WE  PLS  QL YAA DAFA   L+Q++   P  +
Sbjct:  279 IPSSLYAILEDPTILKTGVGIHGDVSKLQRDYKLK----IQGVVNLSEIANQKL----GRWQSWSLSSLSQALTCKQVEKVPNIRCGDWEACPLSPPQLQYAATDAFASLYLYQILESFPSRI 393          
BLAST of mRNA_C-linearis_contig11.1359.1 vs. uniprot
Match: A0A396IWX4_MEDTR (Putative DNA helicase n=2 Tax=Medicago truncatula TaxID=3880 RepID=A0A396IWX4_MEDTR)

HSP 1 Score: 88.6 bits (218), Expect = 1.860e-15
Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = 0
Query:  231 LPESLVQVLSDPGILLAGVGVGGDVSRLEREYEQLRASGVGGVVDLSEVAKRKVVPDRRRRGMWSLADLCDELLQLELRKPSSLRTGSWEKQPLSVDQLFYAAADAFAGSRLWQVMRGMPD 351
            +P +L  +L D  +L  G G+GGD S++ R+Y       + GV DLS  A +K+     +   W LA L ++LL  +L+KPS +R G+WE   LS +QL YAA DAFA   L+Q ++ +PD
Sbjct:  181 IPRNLQLLLEDSSVLKVGAGIGGDASKVSRDY----FISIKGVEDLSYHANQKLGGGPNK---WGLASLTEKLLSKQLKKPSKIRMGNWETPYLSKEQLEYAATDAFASWFLYQTIKDLPD 294          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1359.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM66_ECTSI7.740e-8561.00WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) 3\'-5\' ... [more]
A0A6H5KKF2_9PHAE2.950e-4939.77HTH_40 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S0A073_9DINO8.930e-2232.29Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A1Y1IE41_KLENI2.960e-1929.14Werner syndrome-like exonuclease n=1 Tax=Klebsormi... [more]
A0A2Z6P1B5_TRISU8.980e-1940.983'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A7S0ZVH3_NOCSC2.030e-1832.27Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A2Z6NBE9_TRISU1.120e-1640.983'-5' exonuclease domain-containing protein n=1 Ta... [more]
V4MI48_EUTSA1.550e-1639.023'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A2K1JPS4_PHYPA3.670e-1642.283'-5' exonuclease domain-containing protein n=2 Ta... [more]
A0A396IWX4_MEDTR1.860e-1540.50Putative DNA helicase n=2 Tax=Medicago truncatula ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 218..347
e-value: 8.6E-9
score: 35.3
IPR029491Helicase Helix-turn-helix domainPFAMPF14493HTH_40coord: 439..500
e-value: 1.6E-7
score: 31.7
NoneNo IPR availablePANTHERPTHR13620:SF45WERNER SYNDROME-LIKE EXONUCLEASEcoord: 45..110
NoneNo IPR availablePANTHERPTHR13620:SF45WERNER SYNDROME-LIKE EXONUCLEASEcoord: 228..353
NoneNo IPR availablePANTHERPTHR136203-5 EXONUCLEASEcoord: 45..110
NoneNo IPR availablePANTHERPTHR136203-5 EXONUCLEASEcoord: 228..353
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 228..348

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3097949..3103487 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1359.1mRNA_C-linearis_contig11.1359.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 3097949..3103565 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1359.1 ID=prot_C-linearis_contig11.1359.1|Name=mRNA_C-linearis_contig11.1359.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=726bp
MSVPGLFVPTYGQPVKVHASGKPTNKNRVLPPKSTASQRPVSKRSLMPAL
VFNGNIEYVQQSFEAAESAARAILAARPEVLGFDMEWQVSFVAGEAPRPT
ATLQLCAPNRPACTETSTTSFGQGEAKQSSSPCPSSSSSSSTSVWGTAFV
FHLSAMRGHPSTVRGVRPQPPSPPSSTQDAATKDKDVASSSSSSSTTTNN
NTTTTNNNNKIGEDEENAGQNHHNHPAAAYLPESLVQVLSDPGILLAGVG
VGGDVSRLEREYEQLRASGVGGVVDLSEVAKRKVVPDRRRRGMWSLADLC
DELLQLELRKPSSLRTGSWEKQPLSVDQLFYAAADAFAGSRLWQVMRGMP
DLVLRRAEANAPRRDTTAVVVPPSSSTITGDAAGSGGKGKVEVEVKAKIE
KKGCQQPALGGKATSSSDANDANKGSPTSRVRPRLPQSKLETHRLWHEDG
LPVDAVAELRCNKASTVRGYLSDCIEAGLPYDWSRLGIDPTKEGKIVGAL
LAATADHPPAATGRDPTTASATRGKNKDKEPGASSCGSGSDGKNPAAPSA
CGAKPQTVPLAPSGSPVGGLQAAVLFPPTLAATGTPGSCGSTSAAAAVGT
AEGQRWEERGGNGPRSANVAKLRGVTPTAADMESECGYISEKGAHGDSTN
GGSSSGGSSNEAGAARVAPRAGAEDGAEGAKGAGETGRWDSVRLKEVKEL
APTAEYWEIRMVLARLKAGWCGYSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR029491Helicase_HTH
IPR012337RNaseH-like_sf