prot_C-linearis_contig11.1348.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig11.1348.1
Unique Name	prot_C-linearis_contig11.1348.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	273

Homology

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BLAST of mRNA_C-linearis_contig11.1348.1 vs. uniprot
Match: A0A6H5KLI3_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLI3_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 6.290e-66
Identity = 102/115 (88.70%), Postives = 109/115 (94.78%), Query Frame = 0

Query:    3 RREGTFFGDPGARGNGPPNIEGMVTLKVDNVPYNSSIDDLRRVFEKFGNLGDIYCPRDLRTGEPRGFAFVRFIDQRDADDAVDRMDGEFFAGRELRIQYAKKRRPE--GSYGGGG 115
            RR+GTFFGDPG RGNGPPNIEGM+TLKVDNVPYNSSIDDLRR+FEK+G LGD+Y PRDLRTGEPRGFAFVRF+DQRDADDA+DRMDGEFFAGRELRIQYAKKRRPE  G YGGGG
Sbjct:    4 RRDGTFFGDPGMRGNGPPNIEGMITLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEASGGYGGGG 118

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BLAST of mRNA_C-linearis_contig11.1348.1 vs. uniprot
Match: A0A6H5KI74_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI74_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.210e-40
Identity = 71/100 (71.00%), Postives = 84/100 (84.00%), Query Frame = 0

Query:   15 RGNGPPNIEGMVTLKVDNVPYNSSIDDLRRVFEKFGNLGDIYCPRDLRTGEPRGFAFVRFIDQRDADDAVDRMDGEFFAGRELRIQYAKKRRPEGSYGGG 114
            RG+GPPNI+GMVTLKVDN+ +  S ++LR VFE  G LGD+Y PRD+RTGEPRGFAFVR++D+RDADDAVDR+DG  F GRELRIQYA+KRRP G   GG
Sbjct:   12 RGSGPPNIDGMVTLKVDNIAFTCSPEELREVFEGCGKLGDVYIPRDMRTGEPRGFAFVRYLDKRDADDAVDRLDGTRFNGRELRIQYARKRRPGGGGSGG 111

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BLAST of mRNA_C-linearis_contig11.1348.1 vs. uniprot
Match: A0A6S7FVA8_PARCT (Serine arginine-rich splicing factor 2 n=2 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7FVA8_PARCT)

HSP 1 Score: 131 bits (329), Expect = 6.020e-34
Identity = 57/97 (58.76%), Postives = 77/97 (79.38%), Query Frame = 0

Query:   15 RGNGPPNIEGMVTLKVDNVPYNSSIDDLRRVFEKFGNLGDIYCPRDLRTGEPRGFAFVRFIDQRDADDAVDRMDGEFFAGRELRIQYAKKRRPEGSY 111
            RG GPPNIEGM +LKVDN+ Y +++DDL++VF  +G++GD+Y PRD RT + RGFAFVRF ++RDA+DA+DR+DG    GRE+R+Q AK  RP+  Y
Sbjct:    5 RGRGPPNIEGMTSLKVDNLTYRTTVDDLKKVFRAYGDVGDVYIPRDARTNQSRGFAFVRFFERRDAEDAMDRVDGSVLDGREIRVQNAKYGRPQSDY 101

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BLAST of mRNA_C-linearis_contig11.1348.1 vs. uniprot
Match: V3ZXL2_LOTGI (RRM domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZXL2_LOTGI)

HSP 1 Score: 125 bits (314), Expect = 2.870e-32
Identity = 59/99 (59.60%), Postives = 75/99 (75.76%), Query Frame = 0

Query:   14 ARGNGPPNIEGMVTLKVDNVPYNSSIDDLRRVFEKFGNLGDIYCPRDLRTGEPRGFAFVRFIDQRDADDAVDRMDGEFFAGRELRIQYAKKRRPEGSYG 112
            +RGNGPP+ +GMV+LKVDN+ Y +  DDL+R FEK+G++GDIY PRD  T E RGFAFVRF D+RDA+DA+D MDG    GR+LR+Q A+  RP    G
Sbjct:    1 SRGNGPPSTDGMVSLKVDNLTYRTRPDDLKRAFEKYGDVGDIYIPRDRITKESRGFAFVRFFDKRDAEDAMDSMDGAMMDGRDLRVQMARYGRPTNQRG 99

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BLAST of mRNA_C-linearis_contig11.1348.1 vs. uniprot
Match: UPI00083C4B05 (serine/arginine-rich splicing factor 2 isoform X2 n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083C4B05)

HSP 1 Score: 124 bits (312), Expect = 8.770e-32
Identity = 62/101 (61.39%), Postives = 73/101 (72.28%), Query Frame = 0

Query:   16 GNGPPNIEGMVTLKVDNVPYNSSIDDLRRVFEKFGNLGDIYCPRDLRTGEPRGFAFVRFIDQRDADDAVDRMDGEFFAGRELRIQYAKKRRPEGSYGGGGH 116
            G  PP IEGMV+LKVDN+ Y ++ DDLRRVFE+ G +GDIY PRD  T E RGFAFVRF D+RDA DA+D MDG    GRELR+Q A+  RP   +  GGH
Sbjct:    4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAQDALDAMDGRMLDGRELRVQMARYGRPTSPHRRGGH 104

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BLAST of mRNA_C-linearis_contig11.1348.1 vs. uniprot
Match: T1J1U9_STRMM (RRM domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J1U9_STRMM)

HSP 1 Score: 125 bits (314), Expect = 1.260e-31
Identity = 58/96 (60.42%), Postives = 73/96 (76.04%), Query Frame = 0

Query:   16 GNGPPNIEGMVTLKVDNVPYNSSIDDLRRVFEKFGNLGDIYCPRDLRTGEPRGFAFVRFIDQRDADDAVDRMDGEFFAGRELRIQYAKKRRPEGSY 111
            G GPPNIEGM +LKVDN+ Y ++ +DLRR FEK+G +GD+Y PRD  T E RGFAFVRF D+RDA+DA++ MDG+   GRELR+Q A+  RP   Y
Sbjct:    4 GRGPPNIEGMTSLKVDNLTYRTTPEDLRRAFEKYGEVGDVYIPRDRFTRESRGFAFVRFYDKRDAEDALEAMDGQMLDGRELRVQMARYGRPSDPY 99

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BLAST of mRNA_C-linearis_contig11.1348.1 vs. uniprot
Match: UPI001B88AFA6 (serine/arginine-rich splicing factor 2-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88AFA6)

HSP 1 Score: 124 bits (312), Expect = 1.540e-31
Identity = 58/98 (59.18%), Postives = 76/98 (77.55%), Query Frame = 0

Query:   16 GNGPPNIEGMVTLKVDNVPYNSSIDDLRRVFEKFGNLGDIYCPRDLRTGEPRGFAFVRFIDQRDADDAVDRMDGEFFAGRELRIQYAKKRRPEGSYGG 113
            G GPPN EGM++LKVDN+ Y ++ ++L+R FEK+G++GD+Y PRD  T E RGFAFVRF D+RDA+DA+D MDG  F GRELR+Q A+  RP+   GG
Sbjct:    4 GRGPPNSEGMISLKVDNLTYRTTPENLKRAFEKYGDVGDVYIPRDRFTRESRGFAFVRFYDKRDAEDAMDSMDGAIFDGRELRVQTARYGRPDTRRGG 101

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BLAST of mRNA_C-linearis_contig11.1348.1 vs. uniprot
Match: A0A2R7WMQ6_ONCFA (RRM domain-containing protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7WMQ6_ONCFA)

HSP 1 Score: 123 bits (309), Expect = 1.640e-31
Identity = 61/100 (61.00%), Postives = 73/100 (73.00%), Query Frame = 0

Query:   16 GNGPPNIEGMVTLKVDNVPYNSSIDDLRRVFEKFGNLGDIYCPRDLRTGEPRGFAFVRFIDQRDADDAVDRMDGEFFAGRELRIQYAKKRRPEGSYGGGG 115
            G  PP I+GMV+LKVDN+ Y ++ DDLRRVFE+ G +GDIY PRD  T E RGFAFVRF D+RDA+DA+D MDG    GRELR+Q A+  RP   Y  GG
Sbjct:    4 GRPPPRIDGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALDAMDGRMLDGRELRVQMARYGRPSSPYRRGG 103

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BLAST of mRNA_C-linearis_contig11.1348.1 vs. uniprot
Match: T1G9I7_HELRO (RRM domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G9I7_HELRO)

HSP 1 Score: 123 bits (309), Expect = 1.690e-31
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 0

Query:   15 RGNGPPNIEGMVTLKVDNVPYNSSIDDLRRVFEKFGNLGDIYCPRDLRTGEPRGFAFVRFIDQRDADDAVDRMDGEFFAGRELRIQYAKKRRPEGSYGGGG 115
            R NGPP+ E + +LKVDN+ + ++++ LR+ FEK+G +GD+Y PRD  T E RGF FVRF D+RDA+DA+D MDG    GRELR+Q AK  RP   YGG G
Sbjct:    4 RYNGPPDTESLFSLKVDNLTFRTTVESLRKAFEKYGEIGDVYIPRDRYTQESRGFGFVRFYDERDAEDAIDGMDGRIMDGRELRVQLAKHPRPPNRYGGSG 104

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BLAST of mRNA_C-linearis_contig11.1348.1 vs. uniprot
Match: A0A674N753_TAKRU (Serine/arginine-rich splicing factor 2 n=3 Tax=Takifugu TaxID=31032 RepID=A0A674N753_TAKRU)

HSP 1 Score: 125 bits (314), Expect = 1.980e-31
Identity = 60/100 (60.00%), Postives = 76/100 (76.00%), Query Frame = 0

Query:   16 GNGPPNIEGMVTLKVDNVPYNSSIDDLRRVFEKFGNLGDIYCPRDLRTGEPRGFAFVRFIDQRDADDAVDRMDGEFFAGRELRIQYAKKRRPEGSYGGGG 115
            G  PP++EGMV+LKVDN+ Y ++ + LRRVFEK+G +GD+Y PRD  T E RGFAFVRF D+RDA+DA+D MDG    GRELR+Q A+  RP  S+ GGG
Sbjct:    4 GRPPPDVEGMVSLKVDNLTYRTAPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFFDKRDAEDAMDAMDGALLDGRELRVQMARYGRPPDSHYGGG 103

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig11.1348.1 vs. uniprot

BLAST of mRNA_C-linearis_contig11.1348.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KLI3_9PHAE	6.290e-66	88.70	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A6H5KI74_9PHAE	1.210e-40	71.00	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6S7FVA8_PARCT	6.020e-34	58.76	Serine arginine-rich splicing factor 2 n=2 Tax=Alc...	[more]
V3ZXL2_LOTGI	2.870e-32	59.60	RRM domain-containing protein (Fragment) n=1 Tax=L...	[more]
UPI00083C4B05	8.770e-32	61.39	serine/arginine-rich splicing factor 2 isoform X2 ...	[more]
T1J1U9_STRMM	1.260e-31	60.42	RRM domain-containing protein n=1 Tax=Strigamia ma...	[more]
UPI001B88AFA6	1.540e-31	59.18	serine/arginine-rich splicing factor 2-like isofor...	[more]
A0A2R7WMQ6_ONCFA	1.640e-31	61.00	RRM domain-containing protein n=1 Tax=Oncopeltus f...	[more]
T1G9I7_HELRO	1.690e-31	55.45	RRM domain-containing protein n=1 Tax=Helobdella r...	[more]
A0A674N753_TAKRU	1.980e-31	60.00	Serine/arginine-rich splicing factor 2 n=3 Tax=Tak...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 27..100 e-value: 6.0E-21 score: 85.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 29..98 e-value: 5.5E-18 score: 64.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 26..104 score: 18.905
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 23..141 e-value: 6.2E-26 score: 93.0
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 17..177
IPR034893	Serine/arginine-rich splicing factor 2-like	PANTHER	PTHR23147:SF145	SERINE/ARGININE-RICH SPLICING FACTOR 2	coord: 17..177
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 20..132

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig11	contig	C-linearis_contig11:2995116..2999836 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig11.1348.1	mRNA_C-linearis_contig11.1348.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig11 2994381..3000699 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig11.1348.1 ID=prot_C-linearis_contig11.1348.1|Name=mRNA_C-linearis_contig11.1348.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=273bp
MSRREGTFFGDPGARGNGPPNIEGMVTLKVDNVPYNSSIDDLRRVFEKFG
NLGDIYCPRDLRTGEPRGFAFVRFIDQRDADDAVDRMDGEFFAGRELRIQ
YAKKRRPEGSYGGGGHGGGYGGGGGRYGGRDDRRDDYRRSSRYSRSRSRS
RDHRRRRSRSASPRRRSRSRSPGRRRSRRSRSRSRSRSPPSRRRSRSPPR
HRDGSAEVGGSSRRGRDRRDSSVDGGGGRDRERDNEGHRKADKQNGFRDS
SPPMNGDDRARRNSDAGSPSPR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR034893	SRSF2-like
IPR035979	RBD_domain_sf