prot_C-linearis_contig11.1303.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1303.1
Unique Nameprot_C-linearis_contig11.1303.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length127
Homology
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BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Match: A0A6H5JVT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT1_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.730e-7
Identity = 47/127 (37.01%), Postives = 69/127 (54.33%), Query Frame = 0 
Query:    1 MENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQARGEAMESLKREGVNAMKEANENSKRLAVSMGELVAFKRHADEREKEGAEV-AKRARKITAVEQQVMFMSPRPDTFALEQALKQLLQEEIES 126
            M N+NG   SRR  + AIK E  +VR+ ++DK ++ R +     +R+GV AM  +N+NS+ +      L   +        EG EV AKRARKI A+E++ M    +      E  L  LL++EIES
Sbjct:   37 MVNNNGQSVSRRETERAIKEEKAQVRQAARDKISEDRAKEAADARRQGVAAMVVSNQNSEEMVGQTKRLATIE--------EGKEVVAKRARKIAALEKRNMIAGGKNPAIVAE--LDALLRKEIES 153
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1303.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JVT1_9PHAE1.730e-737.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2451854..2452234 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1303.1mRNA_C-linearis_contig11.1303.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 2451629..2452267 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1303.1 ID=prot_C-linearis_contig11.1303.1|Name=mRNA_C-linearis_contig11.1303.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=127bp
MENDNGMPTSRRAAKAAIKAEADRVRRESKDKENQARGEAMESLKREGVN
AMKEANENSKRLAVSMGELVAFKRHADEREKEGAEVAKRARKITAVEQQV
MFMSPRPDTFALEQALKQLLQEEIES*
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