prot_C-linearis_contig11.1275.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1275.1
Unique Nameprot_C-linearis_contig11.1275.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length83
Homology
BLAST of mRNA_C-linearis_contig11.1275.1 vs. uniprot
Match: D7FPN5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN5_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.510e-36
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 0
Query:    7 FKALWKVFKSGLLATNAVTILHRQRFLRKYQLEAVDRSPSASAMKNQVVGLIAAAAYLRGPLIVLNTLTCIVAMLP 82
            F  LWK+FK+GLLATNAVTILH+QRFLRKY+L+ VD SPSASAMKNQVVGLIAA AYLRGPLIVLN+LTC++AMLP
Sbjct:    5 FNLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAMLP 80          
BLAST of mRNA_C-linearis_contig11.1275.1 vs. uniprot
Match: A0A835YX81_9STRA (Yos1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX81_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.320e-17
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 0
Query:    9 ALWKVFKSGLLATNAVTILHRQRFLRKYQLEAVDRSPSASAMKNQVVGLIAAAAYLRGPLIVLNTLTCIVAML 81
            +LW +FK+GLL TNAV ILH++RFLR       D +  +S +KNQ +GLI A AYLRGPLI +N LTC   ML
Sbjct:    3 SLWSLFKTGLLVTNAVAILHKERFLRPLGWAEPDPALGSSNLKNQAIGLINAVAYLRGPLIAINLLTCTFEML 75          
BLAST of mRNA_C-linearis_contig11.1275.1 vs. uniprot
Match: K8ZAA6_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAA6_NANGC)

HSP 1 Score: 71.6 bits (174), Expect = 1.020e-14
Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 0
Query:   10 LWKVFKSGLLATNAVTILHRQRFLRKYQLEAVDRSPSASAMKNQVVGLIAAAAYLRGPLIVLNTLTCIVAML 81
            +W ++KSGLL TN V +LHR+RFLRKY L+  + + + S ++NQVVGL+ A  YL+ PLI LN +T ++ +L
Sbjct:    5 IWSLYKSGLLFTNGVAVLHRKRFLRKYGLDVAEVADTTS-IRNQVVGLLNAVQYLKVPLIALNIVTVVIELL 75          
BLAST of mRNA_C-linearis_contig11.1275.1 vs. uniprot
Match: A0A2P6UYX9_9CHLO (Immediate early response 3-interacting 1-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYX9_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 5.600e-10
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0
Query:    9 ALWKVFKSGLLATNAVTILHRQRFLRKY-----QLEAVDRSPSASAMKNQVVGLIAAAAYLRGPLIVLNTLTCIVAM 80
            +LW + +  LL  N + +L+ +RFL KY     Q+      PS +A+K Q++GL+ AAAY+R PLIVLNTL   V +
Sbjct:    2 SLWTLLQGALLIMNGLAVLNNERFLEKYGWGFSQMGNNPMGPSPNALKYQIIGLLHAAAYMRVPLIVLNTLVVFVKL 78          
BLAST of mRNA_C-linearis_contig11.1275.1 vs. uniprot
Match: E1ZJ94_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJ94_CHLVA)

HSP 1 Score: 57.8 bits (138), Expect = 3.200e-9
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 0
Query:   10 LWKVFKSGLLATNAVTILHRQRFLRKY-----QLEAVDRSPSASAMKNQVVGLIAAAAYLRGPLIVLNTLTCIVAM 80
            LW + +  LL +N + IL+ +RFL KY     QL      PS +A+K Q++G++ A+A+LR PLIVLNTL   V +
Sbjct:    3 LWTLLQGVLLVSNGLAILNNERFLEKYGWGFSQLGNNPMGPSPNALKYQIIGMLHASAFLRVPLIVLNTLVVFVKL 78          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1275.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FPN5_ECTSI2.510e-3682.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YX81_9STRA1.320e-1756.16Yos1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
K8ZAA6_NANGC1.020e-1450.00Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A2P6UYX9_9CHLO5.600e-1042.86Immediate early response 3-interacting 1-like n=1 ... [more]
E1ZJ94_CHLVA3.200e-943.42Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013880Yos1-likePFAMPF08571Yos1coord: 10..80
e-value: 2.0E-14
score: 53.6
IPR013880Yos1-likePANTHERPTHR15858UNCHARACTERIZEDcoord: 9..81
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..81
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 82..82
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2147299..2148108 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1275.1mRNA_C-linearis_contig11.1275.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 2147299..2148108 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1275.1 ID=prot_C-linearis_contig11.1275.1|Name=mRNA_C-linearis_contig11.1275.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=83bp
MVAVNLFKALWKVFKSGLLATNAVTILHRQRFLRKYQLEAVDRSPSASAM
KNQVVGLIAAAAYLRGPLIVLNTLTCIVAMLP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013880Yos1