mRNA_C-linearis_contig11.1275.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1275.1
Unique NamemRNA_C-linearis_contig11.1275.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1275.1 vs. uniprot
Match: D7FPN5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN5_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.510e-36
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:   19 FKALWKVFKSGLLATNAVTILHRQRFLRKYQLEAVDRSPSASAMKNQVVGLIAAAAYLRGPLIVLNTLTCIVAMLP 246
            F  LWK+FK+GLLATNAVTILH+QRFLRKY+L+ VD SPSASAMKNQVVGLIAA AYLRGPLIVLN+LTC++AMLP
Sbjct:    5 FNLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAMLP 80
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BLAST of mRNA_C-linearis_contig11.1275.1 vs. uniprot
Match: A0A835YX81_9STRA (Yos1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX81_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.320e-17
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   25 ALWKVFKSGLLATNAVTILHRQRFLRKYQLEAVDRSPSASAMKNQVVGLIAAAAYLRGPLIVLNTLTCIVAML 243
            +LW +FK+GLL TNAV ILH++RFLR       D +  +S +KNQ +GLI A AYLRGPLI +N LTC   ML
Sbjct:    3 SLWSLFKTGLLVTNAVAILHKERFLRPLGWAEPDPALGSSNLKNQAIGLINAVAYLRGPLIAINLLTCTFEML 75
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BLAST of mRNA_C-linearis_contig11.1275.1 vs. uniprot
Match: K8ZAA6_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAA6_NANGC)

HSP 1 Score: 71.6 bits (174), Expect = 1.020e-14
Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:   28 LWKVFKSGLLATNAVTILHRQRFLRKYQLEAVDRSPSASAMKNQVVGLIAAAAYLRGPLIVLNTLTCIVAML 243
            +W ++KSGLL TN V +LHR+RFLRKY L+  + + + S ++NQVVGL+ A  YL+ PLI LN +T ++ +L
Sbjct:    5 IWSLYKSGLLFTNGVAVLHRKRFLRKYGLDVAEVADTTS-IRNQVVGLLNAVQYLKVPLIALNIVTVVIELL 75
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BLAST of mRNA_C-linearis_contig11.1275.1 vs. uniprot
Match: A0A2P6UYX9_9CHLO (Immediate early response 3-interacting 1-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYX9_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 5.600e-10
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:   25 ALWKVFKSGLLATNAVTILHRQRFLRKY-----QLEAVDRSPSASAMKNQVVGLIAAAAYLRGPLIVLNTLTCIVAM 240
            +LW + +  LL  N + +L+ +RFL KY     Q+      PS +A+K Q++GL+ AAAY+R PLIVLNTL   V +
Sbjct:    2 SLWTLLQGALLIMNGLAVLNNERFLEKYGWGFSQMGNNPMGPSPNALKYQIIGLLHAAAYMRVPLIVLNTLVVFVKL 78
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BLAST of mRNA_C-linearis_contig11.1275.1 vs. uniprot
Match: E1ZJ94_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJ94_CHLVA)

HSP 1 Score: 57.8 bits (138), Expect = 3.200e-9
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:   28 LWKVFKSGLLATNAVTILHRQRFLRKY-----QLEAVDRSPSASAMKNQVVGLIAAAAYLRGPLIVLNTLTCIVAM 240
            LW + +  LL +N + IL+ +RFL KY     QL      PS +A+K Q++G++ A+A+LR PLIVLNTL   V +
Sbjct:    3 LWTLLQGVLLVSNGLAILNNERFLEKYGWGFSQLGNNPMGPSPNALKYQIIGMLHASAFLRVPLIVLNTLVVFVKL 78
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FPN5_ECTSI2.510e-3682.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YX81_9STRA1.320e-1756.16Yos1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
K8ZAA6_NANGC1.020e-1450.00Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A2P6UYX9_9CHLO5.600e-1042.86Immediate early response 3-interacting 1-like n=1 ... [more]
E1ZJ94_CHLVA3.200e-943.42Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2147299..2148108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue3e-08
Seed eggNOG ortholog112098.XP_008608353.1
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Yos1-like
EggNOG OGs2E2PC@1,2S9WB@2759
Ec32 ortholog descriptionYos1-like
Ec32 orthologEc-16_001310.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size249
Cds size249
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927450.6615753-CDS-C-linearis_contig11:2147298..21474411622927450.6615753-CDS-C-linearis_contig11:2147298..2147441Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2147299..2147441 -
1690879707.91786-CDS-C-linearis_contig11:2147298..21474411690879707.91786-CDS-C-linearis_contig11:2147298..2147441Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2147299..2147441 -
1622927450.67529-CDS-C-linearis_contig11:2148002..21481081622927450.67529-CDS-C-linearis_contig11:2148002..2148108Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2148003..2148108 -
1690879707.9297934-CDS-C-linearis_contig11:2148002..21481081690879707.9297934-CDS-C-linearis_contig11:2148002..2148108Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2148003..2148108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1275.1prot_C-linearis_contig11.1275.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2147299..2148108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1275.1

>prot_C-linearis_contig11.1275.1 ID=prot_C-linearis_contig11.1275.1|Name=mRNA_C-linearis_contig11.1275.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=83bp
MVAVNLFKALWKVFKSGLLATNAVTILHRQRFLRKYQLEAVDRSPSASAM
KNQVVGLIAAAAYLRGPLIVLNTLTCIVAMLP*
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mRNA from alignment at C-linearis_contig11:2147299..2148108-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1275.1 ID=mRNA_C-linearis_contig11.1275.1|Name=mRNA_C-linearis_contig11.1275.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=810bp|location=Sequence derived from alignment at C-linearis_contig11:2147299..2148108- (Chordaria linearis ClinC8C monoicous)
ATGGTTGCTGTGAATCTATTTAAAGCGCTGTGGAAGGTGTTCAAGTCTGG
TTTGTTGGCTACGAACGCCGTGACCATCCTTCACAGACAGCGCTTCTTGA
GAAAATGTGAGTGCTGTGCTCTGTGTGTGTCGCAGTCAACAGGTAACTCC
GCAAGCTGTGTTTCCCCCCCGCAGTGTGTACCTGGCAGGTGTTTGCCGCC
CCTCACAGAGGACGGAGTGCTCTAGTGGTGTCGATGATATTGCTCTTCTG
TTTCAGTGGTCACAGCGGTGGTCTAGTGGTATCTAATGGACATTGGAATT
GTCAAACTCCTTCCGCGTCGGAACTGCTGCAACACAGAGCGGTGTTTGAG
ACCGACCGCAGGCCAACAAGCTTTTGTACCAGCCAATGCTGGCATTAACC
TACTGCTGGTAACCCTCTCCGCATGCTTACCTAAACAGCCCTGTAAATTA
TTTGGCAACAGCGGACCACACACCCCCTTCTCGTGCCACAGCCGAAACGT
ACACCATGTAAGGCCTTCTCCGCGATCACCCCGCTCCATCGTCTCCTCCT
TCCAATGCGCTCGGTCGTTACATAGATTACTCCTGTACTTCGTTCGATTC
CCTCTTCGTAATGCCCACACGCCACACGGTTCCCTTGTTCCCCCCTTTCT
TTCAAATCGGTTGGAAGACCAACTAGAGGCGGTGGACCGCTCGCCGTCGG
CTTCCGCGATGAAGAACCAGGTGGTCGGCCTGATCGCGGCGGCGGCGTAT
CTCCGAGGCCCGCTGATCGTCCTCAACACCCTCACTTGTATCGTCGCCAT
GCTTCCATGA
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Coding sequence (CDS) from alignment at C-linearis_contig11:2147299..2148108-

>mRNA_C-linearis_contig11.1275.1 ID=mRNA_C-linearis_contig11.1275.1|Name=mRNA_C-linearis_contig11.1275.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at C-linearis_contig11:2147299..2148108- (Chordaria linearis ClinC8C monoicous)
ATGGTTGCTGTGAATCTATTTAAAGCGCTGTGGAAGGTGTTCAAGTCTGG
TTTGTTGGCTACGAACGCCGTGACCATCCTTCACAGACAGCGCTTCTTGA
GAAAATATGGTTGCTGTGAATCTATTTAAAGCGCTGTGGAAGGTGTTCAA
GTCTGGTTTGTTGGCTACGAACGCCGTGACCATCCTTCACAGACAGCGCT
TCTTGAGAAAATACCAACTAGAGGCGGTGGACCGCTCGCCGTCGGCTTCC
GCGATGAAGAACCAGGTGGTCGGCCTGATCGCGGCGGCGGCGTATCTCCG
AGGCCCGCTGATCGTCCTCAACACCCTCACTTGTATCGTCGCCATGCTTC
CATGAACCAACTAGAGGCGGTGGACCGCTCGCCGTCGGCTTCCGCGATGA
AGAACCAGGTGGTCGGCCTGATCGCGGCGGCGGCGTATCTCCGAGGCCCG
CTGATCGTCCTCAACACCCTCACTTGTATCGTCGCCATGCTTCCATGA
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