prot_C-linearis_contig11.1270.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1270.1
Unique Nameprot_C-linearis_contig11.1270.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length310
Homology
BLAST of mRNA_C-linearis_contig11.1270.1 vs. uniprot
Match: D8LU61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU61_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.550e-12
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 0
Query:   23 RRKNKCGRWTRQEHERFL---GGLEAVGERWCLVATYV-PSRTERQVRTHAQKYFRKVRQGLPFPDEPY 87
            RR+NK GRWT+ EHERFL   G L    E W L++ +V  +R+  QVRTHAQKYF+++ QG PFPDEPY
Sbjct:    2 RRRNK-GRWTKDEHERFLSVVGQLGKTTESWKLISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPY 69          
BLAST of mRNA_C-linearis_contig11.1270.1 vs. uniprot
Match: A0A6H5JC35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC35_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.350e-12
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 0
Query:   23 RRKNKCGRWTRQEHERFLGGLEAVGERWCLVATYVPSRTERQVRTHAQKYFRKVRQGLPFPDEPYQS 89
            RR    GRWT++EH+ FL GL   G+ W L+A  V +R+  QVRTH QKYF+KV +G  FP+EPY+S
Sbjct:    2 RRSFNNGRWTKEEHDAFLQGLVLHGKNWDLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEEPYES 68          
BLAST of mRNA_C-linearis_contig11.1270.1 vs. uniprot
Match: A0A7S1C6P3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6P3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.530e-11
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 0
Query:   29 GRWTRQEHERFLGGLEAVGERWCLVATYVPSRTERQVRTHAQKYFRKV--RQGL 80
            GRWTR EHERF+ GLE  G  W  VA+ +PSRT  Q+RTHAQKYF+K+   QGL
Sbjct:   21 GRWTRDEHERFVKGLELYGREWKKVASMIPSRTVVQIRTHAQKYFQKLAKEQGL 74          
BLAST of mRNA_C-linearis_contig11.1270.1 vs. uniprot
Match: A0A6H5JBL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL6_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.990e-11
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 0
Query:   25 KNKCGRWTRQEHERFL---GGLEAVGERWCLVA-TYVPSRTERQVRTHAQKYFRKVRQGLPFPDEPYQSSV 91
            +NK GRWT+ EHERFL   G L    E W  ++   V +R+  QVRTHAQKYFRK+ QGLPFPDE  +S V
Sbjct:   49 RNK-GRWTKDEHERFLCVAGQLGKNKESWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDEVRKSYV 118          
BLAST of mRNA_C-linearis_contig11.1270.1 vs. uniprot
Match: D8LU58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU58_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 5.960e-11
Identity = 43/95 (45.26%), Postives = 55/95 (57.89%), Query Frame = 0
Query:    3 RCWSVCFPQQMVVGSNSNGSRRKNKCGRWTRQEHERFLGGLEAVG---ERWCLVA-TYVPSRTERQVRTHAQKYFRKVRQGLPFPDEPYQSSVED 93
            R + V      V+ ++   SR K   GRWT+ EHERFL     +G   E W  ++   V +R+  QVRTHAQKYFRK+ QGLPFPDE  Q +  D
Sbjct:    6 RAYCVDIISLCVLAASRILSRNK---GRWTKDEHERFLSVAGQLGKNKESWRWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDEGGQDTSLD 97          
BLAST of mRNA_C-linearis_contig11.1270.1 vs. uniprot
Match: A0A1Z5JEK9_FISSO (MYB-related transcription factor LHY n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEK9_FISSO)

HSP 1 Score: 72.0 bits (175), Expect = 1.270e-10
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 0
Query:   16 GSNSNGSRRKNKCGRWTRQEHERFLGGLEAVGERWCLVATYVPSRTERQVRTHAQKYFRK-----VRQGLPFPDEPYQSSVE 92
            GS+S+    K K GRWT QEH+ FL GLE  G++W L+A  + +RT  QVRTHAQKYF++     V +G   P  P + S +
Sbjct:   66 GSSSSSLADKEKIGRWTEQEHQVFLEGLEKHGKQWKLIANMIGTRTVVQVRTHAQKYFQRMERHIVNKGNAAPSSPSKPSAK 147          
BLAST of mRNA_C-linearis_contig11.1270.1 vs. uniprot
Match: A0A418DEL0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DEL0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.770e-9
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0
Query:   13 MVVGSNSNGSRRKNKCGRWTRQEHERFLGGLEAVGERWCLVATYVPSRTERQVRTHAQKYFRKV 76
            + VG +     +    GRWT +EHERFL GL   G  W  VA+ + +RT  Q+R+HAQKYF K+
Sbjct:    8 VAVGGDRRSCSKSMNGGRWTDEEHERFLAGLTEHGREWKKVASKIKTRTSAQIRSHAQKYFAKL 71          
BLAST of mRNA_C-linearis_contig11.1270.1 vs. uniprot
Match: A0A7S3ZZK7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZK7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.520e-9
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 0
Query:   12 QMVVGSNSNGSRRKNKCGRWTRQEHERFLGGLEAVGER-WCLVATYVPSRTERQVRTHAQKYFRKVRQGLPFPDEPYQSSVED 93
            Q+ +  NS+    + + GRW+ QEH RF+ GLE  G R W  +A +V +RT  QVR+HAQKYF+K+R+    P     SS ++
Sbjct:   89 QLTLSRNSSTDEAQLESGRWSAQEHARFVDGLEKYGRRKWIRIAEHVGTRTVIQVRSHAQKYFKKLRRAAQPPPARKVSSDDE 171          
BLAST of mRNA_C-linearis_contig11.1270.1 vs. uniprot
Match: A0A397C3Y6_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C3Y6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 7.420e-9
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0
Query:   13 MVVGSNSNGSRRKNKCGRWTRQEHERFLGGLEAVGERWCLVATYVPSRTERQVRTHAQKYFRKV 76
            + VG +     +    GRWT +EHERFL GL   G  W  VA+ + +RT  Q+R+HAQKYF K+
Sbjct:    8 VAVGGDRRSCSKSMNGGRWTDEEHERFLAGLTEHGREWKKVASKIKTRTSAQIRSHAQKYFAKL 71          
BLAST of mRNA_C-linearis_contig11.1270.1 vs. uniprot
Match: A0A7S2DLF5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLF5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 8.250e-9
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 0
Query:   29 GRWTRQEHERFLGGLEAVGERWCLVATYVPSRTERQVRTHAQKYFRKVRQG 79
            GRW ++EHERFL GL   G++W  VA  V +RT  QVR+HAQKYF+KV++G
Sbjct:   13 GRWLQEEHERFLRGLNLFGKKWTKVAEVVGTRTTVQVRSHAQKYFQKVKEG 63          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1270.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU61_ECTSI1.550e-1257.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC35_9PHAE6.350e-1253.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1C6P3_9STRA1.530e-1162.96Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A6H5JBL6_9PHAE2.990e-1156.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU58_ECTSI5.960e-1145.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5JEK9_FISSO1.270e-1046.34MYB-related transcription factor LHY n=2 Tax=Fistu... [more]
A0A418DEL0_9STRA1.770e-945.31Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7S3ZZK7_9STRA3.520e-942.17Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A397C3Y6_9STRA7.420e-945.31Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A7S2DLF5_9STRA8.250e-958.82Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 27..75
e-value: 4.3E-10
score: 49.5
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 29..72
e-value: 1.7E-10
score: 40.9
NoneNo IPR availableGENE3D1.10.10.60coord: 30..77
e-value: 1.1E-14
score: 56.2
NoneNo IPR availablePANTHERPTHR12802SWI/SNF COMPLEX-RELATEDcoord: 25..303
NoneNo IPR availablePANTHERPTHR12802:SF20MPN DOMAIN-CONTAINING PROTEIN CG4751coord: 25..303
IPR006447Myb domain, plantsTIGRFAMTIGR01557TIGR01557coord: 30..75
e-value: 1.0E-8
score: 33.3
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 23..77
score: 13.96
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 25..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2092918..2094562 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1270.1mRNA_C-linearis_contig11.1270.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 2091145..2096575 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1270.1 ID=prot_C-linearis_contig11.1270.1|Name=mRNA_C-linearis_contig11.1270.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=310bp
MHRCWSVCFPQQMVVGSNSNGSRRKNKCGRWTRQEHERFLGGLEAVGERW
CLVATYVPSRTERQVRTHAQKYFRKVRQGLPFPDEPYQSSVEDDDDDEDD
AAAHVDGGVAAAANGEPGPPARPPPDAFHHGPSVAAPSFDGHEFSRNSDS
RNAVWDAGGGGHGGGAAPLFAPVDTAPPRVNPDAAALADNLHGAWLHSGP
EHGAPGFRGEQQQQQFLPFRGHGADMAGGRFSGGRFSPPEGEAAPFRDWP
VAGGDRHANLLVEYGIGDMNGLNSYHNYSNEYTYHNDDSDNGAAAGAAAA
AAAPAPRFR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR006447Myb_dom_plants
IPR017930Myb_dom
IPR009057Homeobox-like_sf