prot_C-linearis_contig11.1267.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1267.1
Unique Nameprot_C-linearis_contig11.1267.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length409
Homology
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BLAST of mRNA_C-linearis_contig11.1267.1 vs. uniprot
Match: A0A6H5K8X9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8X9_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 3.420e-63
Identity = 199/456 (43.64%), Postives = 238/456 (52.19%), Query Frame = 0 
Query:    1 MKRSRTCMNLVELDAPAAPKRTCSLP-NL------AWNSPPASSIIPRQNHRDTLLFFQQHAASTLSRDAAIAAPPTAAAEGSFVVESIVRSKGSLNEITIVEGQQFFGEESGETAAPAVPQCSAAGGS--------------PVALFGGAVHGSVFENCCDPIDYFCGVAASSDEVEEEGSTDAAAGAT---VSDGSDSGARFARQVSDADSSASASCARQISXASXXXXSNSGCCS-SGDXXXXXXGNIGYAFEGEAEADEADAVIATGSDAAY----AAPASLSRSLPTLAAQPWGSNTL--------PVVA--GPHAGGSWRPRMARGPRVKVRICSPRSGGGSGRRQRSMTXXXXWPPTVVPPLAVMNSWRDGP---ATTRIDNRXXXXXXXXXXRLRCLDVCDNDN----EDGSVVSAVSLGFGLSDDVKMLIGMDRLRLVD--PETASY 408
            MKRSRTC+NL ELD PAAPKRTCSLP NL      + +S  + S+  RQN ++ LLF QQHAASTL++  A A  P   A+G+FVVESIVRS+ SLNEITI EGQQF G+ES E AA AVPQ  +                  P++LFGGAV GS+FE+  D  DYFCGV  SSDE +E+ +  AA+ A    +S   DS                        X S    S+S C S SG       G   YAFEG+      D++I   +D       AA A LS SLP                    P+VA  GPHAGGSW+P  A  PRV VRI       G+ R +RSMT    WP T++P  A+MN W  GP   A    D            R RC      D     +DGS+VSA     GLSDD KMLIGM+RLRLVD  PE AS+
Sbjct:    1 MKRSRTCLNLFELDTPAAPKRTCSLPSNLGSFSSSSISSSSSFSLSVRQN-QERLLFLQQHAASTLAQGTAAA--PATIADGAFVVESIVRSQRSLNEITIHEGQQFIGQESNE-AATAVPQQQSLAAXXXXXXXXXXXXXXXPLSLFGGAVIGSLFEDGGDSSDYFCGVD-SSDEADEDSTVIAASAAAECAISTTCDSXXXXXXXXXXXXXXXXXXXXXXXXXXS----SSSSCSSASGSGAIGGFGAERYAFEGDD-----DSIIGIAADPFVDLDTAAAAGLSFSLPAAHXXXXXXXXXXXXXXPPQPLVAATGPHAGGSWQPAAAGAPRVSVRISGGXXXXGTSR-ERSMTVPPPWPATMLPTSALMNGWSAGPIAGAGHSGDGGNSWRRQRQGGRRRCRGDSGRDGSGEEDDGSLVSAA---VGLSDDAKMLIGMNRLRLVDLAPENASF 438
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1267.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8X9_9PHAE3.420e-6343.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:1994007..1998005 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1267.1mRNA_C-linearis_contig11.1267.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 1993864..1998292 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1267.1 ID=prot_C-linearis_contig11.1267.1|Name=mRNA_C-linearis_contig11.1267.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=409bp
MKRSRTCMNLVELDAPAAPKRTCSLPNLAWNSPPASSIIPRQNHRDTLLF
FQQHAASTLSRDAAIAAPPTAAAEGSFVVESIVRSKGSLNEITIVEGQQF
FGEESGETAAPAVPQCSAAGGSPVALFGGAVHGSVFENCCDPIDYFCGVA
ASSDEVEEEGSTDAAAGATVSDGSDSGARFARQVSDADSSASASCARQIS
DASSSSSSNSGCCSSGDASSGGGGNIGYAFEGEAEADEADAVIATGSDAA
YAAPASLSRSLPTLAAQPWGSNTLPVVAGPHAGGSWRPRMARGPRVKVRI
CSPRSGGGSGRRQRSMTVPPPWPPTVVPPLAVMNSWRDGPATTRIDNRQQ
QQQQQQRRRLRCLDVCDNDNEDGSVVSAVSLGFGLSDDVKMLIGMDRLRL
VDPETASY*
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