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Homology
BLAST of mRNA_C-linearis_contig11.1267.1 vs. uniprot
Match: A0A6H5K8X9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8X9_9PHAE) HSP 1 Score: 220 bits (560), Expect = 3.500e-62 Identity = 199/456 (43.64%), Postives = 238/456 (52.19%), Query Frame = 3
Query: 144 MKRSRTCMNLVELDAPAAPKRTCSLP-NL------AWNSPPASSIIPRQNHRDTLLFFQQHAASTLSRDAAIAAPPTAAAEGSFVVESIVRSKGSLNEITIVEGQQFFGEESGETAAPAVPQCSAAGGS--------------PVALFGGAVHGSVFENCCDPIDYFCGVAASSDEVEEEGSTDAAAGAT---VSDGSDSGARFARQVSDADSSASASCARQISXASXXXXSNSGCCS-SGDXXXXXXGNIGYAFEGEAEADEADAVIATGSDAAY----AAPASLSRSLPTLAAQPWGSNTL--------PVVA--GPHAGGSWRPRMARGPRVKVRICSPRSGGGSGRRQRSMTXXXXWPPTVVPPLAVMNSWRDGP---ATTRIDNRXXXXXXXXXXRLRCLDVCDNDN----EDGSVVSAVSLGFGLSDDVKMLIGMDRLRLVD--PETASY 1367
MKRSRTC+NL ELD PAAPKRTCSLP NL + +S + S+ RQN ++ LLF QQHAASTL++ A A P A+G+FVVESIVRS+ SLNEITI EGQQF G+ES E AA AVPQ + P++LFGGAV GS+FE+ D DYFCGV SSDE +E+ + AA+ A +S DS X S S+S C S SG G YAFEG+ D++I +D AA A LS SLP P+VA GPHAGGSW+P A PRV VRI G+ R +RSMT WP T++P A+MN W GP A D R RC D +DGS+VSA GLSDD KMLIGM+RLRLVD PE AS+
Sbjct: 1 MKRSRTCLNLFELDTPAAPKRTCSLPSNLGSFSSSSISSSSSFSLSVRQN-QERLLFLQQHAASTLAQGTAAA--PATIADGAFVVESIVRSQRSLNEITIHEGQQFIGQESNE-AATAVPQQQSLAAXXXXXXXXXXXXXXXPLSLFGGAVIGSLFEDGGDSSDYFCGVD-SSDEADEDSTVIAASAAAECAISTTCDSXXXXXXXXXXXXXXXXXXXXXXXXXXS----SSSSCSSASGSGAIGGFGAERYAFEGDD-----DSIIGIAADPFVDLDTAAAAGLSFSLPAAHXXXXXXXXXXXXXXPPQPLVAATGPHAGGSWQPAAAGAPRVSVRISGGXXXXGTSR-ERSMTVPPPWPATMLPTSALMNGWSAGPIAGAGHSGDGGNSWRRQRQGGRRRCRGDSGRDGSGEEDDGSLVSAA---VGLSDDAKMLIGMNRLRLVDLAPENASF 438
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-00_007150.1 |
| Exons | 3 |
| Model size | 1657 |
| Cds size | 1227 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927449.1780937-UTR-C-linearis_contig11:1993863..1994006 | 1622927449.1780937-UTR-C-linearis_contig11:1993863..1994006 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig11 1993864..1994006 + |
| 1690879706.9369829-UTR-C-linearis_contig11:1993863..1994006 | 1690879706.9369829-UTR-C-linearis_contig11:1993863..1994006 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig11 1993864..1994006 + |
| 1622927449.2237911-UTR-C-linearis_contig11:1998005..1998292 | 1622927449.2237911-UTR-C-linearis_contig11:1998005..1998292 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig11 1998006..1998292 + |
| 1690879706.9797657-UTR-C-linearis_contig11:1998005..1998292 | 1690879706.9797657-UTR-C-linearis_contig11:1998005..1998292 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig11 1998006..1998292 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927449.1948419-CDS-C-linearis_contig11:1994006..1994190 | 1622927449.1948419-CDS-C-linearis_contig11:1994006..1994190 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 1994007..1994190 + |
| 1690879706.94834-CDS-C-linearis_contig11:1994006..1994190 | 1690879706.94834-CDS-C-linearis_contig11:1994006..1994190 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 1994007..1994190 + |
| 1622927449.2038994-CDS-C-linearis_contig11:1994644..1994904 | 1622927449.2038994-CDS-C-linearis_contig11:1994644..1994904 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 1994645..1994904 + |
| 1690879706.958164-CDS-C-linearis_contig11:1994644..1994904 | 1690879706.958164-CDS-C-linearis_contig11:1994644..1994904 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 1994645..1994904 + |
| 1622927449.214881-CDS-C-linearis_contig11:1997222..1998005 | 1622927449.214881-CDS-C-linearis_contig11:1997222..1998005 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 1997223..1998005 + |
| 1690879706.9681833-CDS-C-linearis_contig11:1997222..1998005 | 1690879706.9681833-CDS-C-linearis_contig11:1997222..1998005 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig11 1997223..1998005 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1267.1 >prot_C-linearis_contig11.1267.1 ID=prot_C-linearis_contig11.1267.1|Name=mRNA_C-linearis_contig11.1267.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=409bp
MKRSRTCMNLVELDAPAAPKRTCSLPNLAWNSPPASSIIPRQNHRDTLLF
FQQHAASTLSRDAAIAAPPTAAAEGSFVVESIVRSKGSLNEITIVEGQQF
FGEESGETAAPAVPQCSAAGGSPVALFGGAVHGSVFENCCDPIDYFCGVA
ASSDEVEEEGSTDAAAGATVSDGSDSGARFARQVSDADSSASASCARQIS
DASSSSSSNSGCCSSGDASSGGGGNIGYAFEGEAEADEADAVIATGSDAA
YAAPASLSRSLPTLAAQPWGSNTLPVVAGPHAGGSWRPRMARGPRVKVRI
CSPRSGGGSGRRQRSMTVPPPWPPTVVPPLAVMNSWRDGPATTRIDNRQQ
QQQQQQRRRLRCLDVCDNDNEDGSVVSAVSLGFGLSDDVKMLIGMDRLRL
VDPETASY* back to topmRNA from alignment at C-linearis_contig11:1993864..1998292+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig11.1267.1 ID=mRNA_C-linearis_contig11.1267.1|Name=mRNA_C-linearis_contig11.1267.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4429bp|location=Sequence derived from alignment at C-linearis_contig11:1993864..1998292+ (Chordaria linearis ClinC8C monoicous)
TGATTTCGGGTCGTCGCGTCGCGTCGAGGTACACTGCTGAAGCGCGAAGT
TTAATGTTGAACCTGGCTCCATACACCATTTTTGCCTCATCAGCTTCCCC
CCCCTCGGCCGGGGGCAGATAGACACCTGAGGGCGAAGCAACCATGAAGA
GGAGTAGAACATGCATGAACCTGGTGGAGCTTGATGCGCCGGCGGCTCCG
AAGAGGACGTGCTCCCTCCCCAACCTTGCCTGGAACAGCCCTCCAGCCAG
CAGCATCATCCCTAGGCAGAACCACCGAGACACCTTGCTCTTCTTCCAGC
AACACGCGGCGTCCACGCTCTCCCGAGGTGCGTTGCGAGGAATATCTCGC
CCTGCCTTGTGTCTCTGTTGCACACAAACGCGACCGGCTCTGTGGTGATT
TTAGCTAGAGCTCTCTCTCCGTGTCTTTGTGTGATGTGTGGGTGTCAACA
GCACAACTATCTAGCCACAAGTTCACTCCTATTTTCTACGAATGTTGATT
TCAGATCCTTGTGTGCATTTTGGGGAAACTCGTTGCCTTTAGGCCTCGGC
CCCGCCGGCCTGGCGTGCACCGTAGGCGGGATAGAGATTACAGCGACACC
GGCTACGAACGATGTAGTGGTGTTGTGGTTGCTTCTCTGTTTTTGTCCGA
GGTGCTGTCACGTCCTTAGTCTAGTGTTGGTGGTTCGTGACCGGGGCTAC
TTTGCCGTTTTCAAACGGAGCGTTGCTGTCAACGATTACTACTGAACTTG
CTCCTTGTCAACACACATCTGGTTGCAGCAGACGCTGCTATCGCCGCTCC
ACCCACGGCCGCAGCGGAAGGGTCGTTCGTGGTGGAGTCTATCGTTCGCT
CCAAGGGTTCTCTAAACGAGATCACCATCGTGGAAGGGCAGCAGTTCTTT
GGGGAGGAGAGCGGGGAGACGGCAGCGCCAGCGGTGCCGCAATGTTCAGC
GGCAGGCGGGTCGCCCGTGGCGCTGTTTGGGGGCGCGGTTCATGGGAGCG
TGTTCGAGAATTGCTGTGATCCCATTGACTACTTCTGTGGGGTGAGTACG
CGGGGGAGGTGTGAAAGACTGGGGCTCTCGTTTTGCAAAACTTCAATGTG
TAGACAAAAGCTGGTGAACTGGAATCGTTTTTTTTTTGACAGCGTGTTTT
TGCCGATGAAAAAAACGTACCAGTACTTGTATTGGGTGTGTCTGTGTGTG
TGTGCTTCCTTTTTAGGGCCAAAAATCTCGCATCGAATGAAAGAGTCGTT
TCGCCCTGCCCTCGCGCCAACCTTGGGCATCTCTTGTATGCGCCCGCGAG
CGGAAGCCTTTTACAACGTGTTCCACGTCAGCTCACGGCTCGAACTTGCG
TTACATGCGTACGCTAGTCGATTGTGACCCCGACGTTCCGGCGTGGATAC
TGGTGAACTTTGGAATCTTATTTTACATTTTACCCTCTTTCTGCGATGTG
GGAGCGACAGTAGACCTGATTTTGACGTTAAACCGTTCGGCACATTCAAT
GCTAAGGGATATGAGACGCACGTTGGCGGCGGCGCACTAGATTTCGCGCT
CCGATTTGTGTACGTGCCCTAGGCATCTCCTCGCGGAGTACCGGTGTTGC
GTTAGAGCCACACCACACACGTGCGTGATGGTGGTGGTCCGTAGCCCGTA
GCCCGTAGCTCGAAGTTTACATCAGTTTGGGGACAAAAAAATCCAGCTCT
CGAAGAATTCGTTGATGTCTCTCTCTCAAAAAGTGACGGGTCAGACGCGC
AGGCGTGACGTCAAACATGCGCACCTCCTCGCTTTTTCCAGCTCGATCGT
GCATGCGAGCGCATTTTTTCATCGTAGTATACACTGCCGCAGCAGACAAA
ACACACAGATGTGGCAGCGTAAATTAGGTGTAAAGCTCGCTATCTTGTAG
GCACGAGGGCCGAAAATATTGCCGCTCTCTCTCTCTCTCCCTGCTGTCAC
TCTCCTCATAACGACCAGAGAGTTTTGCCGCACCCCGTAGTCTGCGTTGG
CCACGTGCGCAGACTGACACACAGAACATAAATAAATAGACATAAACGTA
TATAGATGGGCATGTTGTGTCGGGGAACTCTTCACAGAATGAGCCATTAG
GCGGCCCTTTTTGAGCAGCAGAAGAAGTTGGGGCCTTCGAAACTGCTTCA
AGACAATTGAACGGGAGGAGGGGGTTTGGAATAGATTCCCGCGGTTTGAA
ATTTTGGTAAGTTTAAGTTTGTCGATGCCACCTAACAACGAAGACCGCCA
GGTAAATTCCTAGATGTGCCAGTAGGCGAAGAAAATACATGATCCCAGCC
ATGACGGTTGTTGCAACTCCAAGCCCTATTTAGCGTCACCATGCATGCTG
CTGTCTGTTTTCCGGCGAGCGAGTGTGCTCCCGAGACTCTCTCGCTGTTG
GTACCTAGGTTGTCACTATGTTTTAGCGACGACTACAAATACATTCCCCG
TTGATCAGCATCGGTTAATTGATGGCTTCCTGCCTCGCGCCAAAAAAGGG
CTTCATCTTCACGTGTTCATCTTCTCTTTTTTTCTGTTCACCAATTCAAG
CACAGGTATATACAATGGATGCATTGTTGTCTGTAGACCTAGCTAAGCTT
AGCTCTTCCGCAAGGTTGAAGGTGCTGCTGTTGGAGTTTCGTGTGCAACT
GCAGGTGCGAGAAGCCCCTCACTATCGAAATTGTTCATTTTCGGCAGTTC
TGCATGTTCCCCACAGTGCTAGTTGAAGTACGGTAATATCCCCACCTTCG
CGCGGGACCCTAAAGCGCTCCCTCCTTACTTGATCTCCTTTCCCCTGTGT
AGCTTGCCTTCCTACGCATGTCGCGATTTCGGTATTGGAATCCGGCGTTT
TTTTTTTTTTTCGTTTTCACATTTATTTCTTATTTCCATAGTTCGCAGGG
CCTTGCCACGCGGGGCATCTTGCCAGAACATCTGAACCGTGGTCACACAG
AAGGCTCCTCTCCCTGAGGCCCCCACCCACTTGCTGCGGTGCTTGCCTGG
TAATGTTTAACGCGAGAGAGTCTCTGCCGTCTCTCCCTCAGAGGTGCAGC
ACAGAAAAAAAATGCGGGTGTGCGCTTGGAACGGCAGTTAGAGTGGTCCA
ACGCATTCCGTGTTCCACTGCTGTCTGTGTTTTTCATCAGCTTCGAGCAT
GGACATATCATAGCCGCCCCGCGCTCGCCGCGCACTTTTGAAGTCACACG
CGTCCTCGTTTGTTTGCACGCCTTGCCGCCGTGATGAACATCACGTCAAG
ATTTCTTGGTGGTAAATACATACAGAGGCGCGTTTCTGACTCAATCCTTT
CCTCCTGTGTCGACTACTCTTTTTGCTGCAATGGCCGATGAATGATAAAA
TTGCCGCAGGTCGCAGCATCGTCTGACGAAGTGGAAGAAGAGGGCAGCAC
CGACGCTGCCGCCGGGGCTACTGTGAGCGACGGCAGCGACAGCGGCGCCC
GCTTCGCCCGCCAGGTCTCGGATGCGGACAGCAGCGCCAGCGCCTCCTGT
GCAAGGCAGATCTCCGACGCCAGCAGCAGCAGCAGCAGCAACAGCGGCTG
CTGCAGCAGCGGCGACGCCAGCAGTGGCGGCGGCGGCAACATCGGCTACG
CCTTCGAAGGCGAAGCGGAAGCCGACGAGGCCGATGCTGTCATCGCCACC
GGCTCGGACGCAGCTTACGCGGCGCCCGCCTCGCTGTCGCGGTCGCTCCC
GACCCTGGCGGCTCAGCCATGGGGCAGCAACACGTTGCCGGTGGTGGCGG
GCCCGCACGCCGGCGGGTCGTGGCGACCCCGCATGGCCCGTGGTCCCCGG
GTTAAGGTCAGGATATGTTCCCCCCGCTCCGGCGGCGGCAGCGGCAGGAG
GCAGCGGAGCATGACCGTCCCGCCCCCGTGGCCGCCCACCGTCGTTCCCC
CGTTGGCTGTGATGAACAGCTGGAGAGACGGACCCGCGACCACTAGGATC
GACAACCGGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGTCGCCTTCGGTG
CCTGGACGTGTGCGACAACGACAACGAGGACGGGTCGGTCGTGTCCGCCG
TCAGCCTGGGGTTCGGCCTGAGCGACGACGTCAAGATGCTGATCGGCATG
GACCGCCTTCGGCTGGTGGACCCCGAAACCGCCAGTTATTGATCTCCGTC
GGTCGATGGATCGATCGATTGACGGTGTCGGTTGTTGTCGCTTTAGTTGG
GGGGCCGATAGGGTTGTTGGTGGTATTGATCTCAGGTCCGGGGTGCTATA
TCTAGGTCCGGGGTGCTTGGGCGTGAGATGAGTCCAGAGGAGAGGAGAGG
GAGGAAGGGCAGTGTAAAGAGTCCTTTGGTTGATAAATTGGCTTGGTAAA
GTTGGCTTGGCCTTGGTGTTTGACTTTCCATCTTGTTGGATGACGAGATG
GGAGGGAGCCACCGGGCAGGGTAAGGTAG back to topCoding sequence (CDS) from alignment at C-linearis_contig11:1993864..1998292+ >mRNA_C-linearis_contig11.1267.1 ID=mRNA_C-linearis_contig11.1267.1|Name=mRNA_C-linearis_contig11.1267.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2454bp|location=Sequence derived from alignment at C-linearis_contig11:1993864..1998292+ (Chordaria linearis ClinC8C monoicous)
ATGAAGAGGAGTAGAACATGCATGAACCTGGTGGAGCTTGATGCGCCGGC
GGCTCCGAAGAGGACGTGCTCCCTCCCCAACCTTGCCTGGAACAGCCCTC
CAGCCAGCAGCATCATCCCTAGGCAGAACCACCGAGACACCTTGCTCTTC
TTCCAGCAACACGCGGCGTCCACGCTCTCCCGAGATGAAGAGGAGTAGAA
CATGCATGAACCTGGTGGAGCTTGATGCGCCGGCGGCTCCGAAGAGGACG
TGCTCCCTCCCCAACCTTGCCTGGAACAGCCCTCCAGCCAGCAGCATCAT
CCCTAGGCAGAACCACCGAGACACCTTGCTCTTCTTCCAGCAACACGCGG
CGTCCACGCTCTCCCGAGACGCTGCTATCGCCGCTCCACCCACGGCCGCA
GCGGAAGGGTCGTTCGTGGTGGAGTCTATCGTTCGCTCCAAGGGTTCTCT
AAACGAGATCACCATCGTGGAAGGGCAGCAGTTCTTTGGGGAGGAGAGCG
GGGAGACGGCAGCGCCAGCGGTGCCGCAATGTTCAGCGGCAGGCGGGTCG
CCCGTGGCGCTGTTTGGGGGCGCGGTTCATGGGAGCGTGTTCGAGAATTG
CTGTGATCCCATTGACTACTTCTGTGGGACGCTGCTATCGCCGCTCCACC
CACGGCCGCAGCGGAAGGGTCGTTCGTGGTGGAGTCTATCGTTCGCTCCA
AGGGTTCTCTAAACGAGATCACCATCGTGGAAGGGCAGCAGTTCTTTGGG
GAGGAGAGCGGGGAGACGGCAGCGCCAGCGGTGCCGCAATGTTCAGCGGC
AGGCGGGTCGCCCGTGGCGCTGTTTGGGGGCGCGGTTCATGGGAGCGTGT
TCGAGAATTGCTGTGATCCCATTGACTACTTCTGTGGGGTCGCAGCATCG
TCTGACGAAGTGGAAGAAGAGGGCAGCACCGACGCTGCCGCCGGGGCTAC
TGTGAGCGACGGCAGCGACAGCGGCGCCCGCTTCGCCCGCCAGGTCTCGG
ATGCGGACAGCAGCGCCAGCGCCTCCTGTGCAAGGCAGATCTCCGACGCC
AGCAGCAGCAGCAGCAGCAACAGCGGCTGCTGCAGCAGCGGCGACGCCAG
CAGTGGCGGCGGCGGCAACATCGGCTACGCCTTCGAAGGCGAAGCGGAAG
CCGACGAGGCCGATGCTGTCATCGCCACCGGCTCGGACGCAGCTTACGCG
GCGCCCGCCTCGCTGTCGCGGTCGCTCCCGACCCTGGCGGCTCAGCCATG
GGGCAGCAACACGTTGCCGGTGGTGGCGGGCCCGCACGCCGGCGGGTCGT
GGCGACCCCGCATGGCCCGTGGTCCCCGGGTTAAGGTCAGGATATGTTCC
CCCCGCTCCGGCGGCGGCAGCGGCAGGAGGCAGCGGAGCATGACCGTCCC
GCCCCCGTGGCCGCCCACCGTCGTTCCCCCGTTGGCTGTGATGAACAGCT
GGAGAGACGGACCCGCGACCACTAGGATCGACAACCGGCAGCAGCAGCAG
CAGCAGCAGCAGCGGCGTCGCCTTCGGTGCCTGGACGTGTGCGACAACGA
CAACGAGGACGGGTCGGTCGTGTCCGCCGTCAGCCTGGGGTTCGGCCTGA
GCGACGACGTCAAGATGCTGATCGGCATGGACCGCCTTCGGCTGGTGGAC
CCCGAAACCGCCAGTTATTGAGTCGCAGCATCGTCTGACGAAGTGGAAGA
AGAGGGCAGCACCGACGCTGCCGCCGGGGCTACTGTGAGCGACGGCAGCG
ACAGCGGCGCCCGCTTCGCCCGCCAGGTCTCGGATGCGGACAGCAGCGCC
AGCGCCTCCTGTGCAAGGCAGATCTCCGACGCCAGCAGCAGCAGCAGCAG
CAACAGCGGCTGCTGCAGCAGCGGCGACGCCAGCAGTGGCGGCGGCGGCA
ACATCGGCTACGCCTTCGAAGGCGAAGCGGAAGCCGACGAGGCCGATGCT
GTCATCGCCACCGGCTCGGACGCAGCTTACGCGGCGCCCGCCTCGCTGTC
GCGGTCGCTCCCGACCCTGGCGGCTCAGCCATGGGGCAGCAACACGTTGC
CGGTGGTGGCGGGCCCGCACGCCGGCGGGTCGTGGCGACCCCGCATGGCC
CGTGGTCCCCGGGTTAAGGTCAGGATATGTTCCCCCCGCTCCGGCGGCGG
CAGCGGCAGGAGGCAGCGGAGCATGACCGTCCCGCCCCCGTGGCCGCCCA
CCGTCGTTCCCCCGTTGGCTGTGATGAACAGCTGGAGAGACGGACCCGCG
ACCACTAGGATCGACAACCGGCAGCAGCAGCAGCAGCAGCAGCAGCGGCG
TCGCCTTCGGTGCCTGGACGTGTGCGACAACGACAACGAGGACGGGTCGG
TCGTGTCCGCCGTCAGCCTGGGGTTCGGCCTGAGCGACGACGTCAAGATG
CTGATCGGCATGGACCGCCTTCGGCTGGTGGACCCCGAAACCGCCAGTTA
TTGA back to top
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