prot_C-linearis_contig11.1167.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1167.1
Unique Nameprot_C-linearis_contig11.1167.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length296
Homology
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BLAST of mRNA_C-linearis_contig11.1167.1 vs. uniprot
Match: D8LKL9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL9_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 4.800e-20
Identity = 51/67 (76.12%), Postives = 58/67 (86.57%), Query Frame = 0 
Query:  113 VVNTSFEPDLCRSLAQLRSRLGSCWLSSAQAATVASLVPRVIGGRHYGVDAVVFLFSRVVDLKNFRQ 179
            VVNTS EP+L +SLAQLR RLG  WLSSAQAATVA++VPRV+GG HY VD  VFLFSRVVDL+N+RQ
Sbjct: 1316 VVNTSPEPNLSQSLAQLRVRLGGSWLSSAQAATVAAVVPRVLGGVHYRVDVAVFLFSRVVDLENYRQ 1382
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BLAST of mRNA_C-linearis_contig11.1167.1 vs. uniprot
Match: A0A6H5K9H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.190e-16
Identity = 59/132 (44.70%), Postives = 75/132 (56.82%), Query Frame = 0 
Query:   26 SVTPRTLGTLNMTEDKDWRKTFVPTELLACDALG--GSLPLRLLVTFVEVSSQFLPDECVGVDVSEFMVLDHQQSETVYEWVPSDQGPEVVNTSFEPDLCRSLAQLRSRLGSCWLSSAQAATVASLVPRVIG 155
            + TPRTLGTL+MT DK WR+ FVP EL A  A+   G L L LLVTFVEVS+QFLP +C     SEF  +DHQ + T +EWVP ++                              + +AATVA++VPRV+G
Sbjct: 1292 AATPRTLGTLDMTTDKGWRELFVPLELSASTAVSEAGPLQLTLLVTFVEVSAQFLPSDCFVS--SEFTTVDHQGTVT-FEWVPLEE------------------------------TTEAATVAAVVPRVLG 1390
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1167.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKL9_ECTSI4.800e-2076.12Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K9H7_9PHAE1.190e-1644.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:429299..433211 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1167.1mRNA_C-linearis_contig11.1167.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 428648..433612 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1167.1 ID=prot_C-linearis_contig11.1167.1|Name=mRNA_C-linearis_contig11.1167.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=296bp
MGHRSNILPSMLAVNPCPPMLFGTSSVTPRTLGTLNMTEDKDWRKTFVPT
ELLACDALGGSLPLRLLVTFVEVSSQFLPDECVGVDVSEFMVLDHQQSET
VYEWVPSDQGPEVVNTSFEPDLCRSLAQLRSRLGSCWLSSAQAATVASLV
PRVIGGRHYGVDAVVFLFSRVVDLKNFRQSWPQRVCPVVTSTQADSRSNL
LLLENKWGSSPASKYNTKNRGLYTQGLYGAFWGWWRIRRNARECTAPTAD
TNTLIVRSLVEKNMNSFLSSFIRDNRSNLHHQWIGFGLAGTKPGG*
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