prot_C-linearis_contig11.1153.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig11.1153.1
Unique Nameprot_C-linearis_contig11.1153.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length121
Homology
BLAST of mRNA_C-linearis_contig11.1153.1 vs. uniprot
Match: D8LSV9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV9_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 4.530e-39
Identity = 77/120 (64.17%), Postives = 88/120 (73.33%), Query Frame = 0
Query:    3 RTTC-GFSAGSVAQQQAATGHGGVASAVGGLCPHATAALEHIAMGTAMPAKEVKGDGWDVAAAKEAVEEKRREGHLSVVQYNAIVAMMEEAAARGVWPVYETETDCFVVRDGRTRTTEHD 121
            RT C G  AG VAQQQ A  HGGVASA+GGLC HA AALEH+   T   A+EVKGDGWD  AAKE V   + +GHLSVV++ AI+ M+E A   GVWPVYETE + FVVRD RTRT+EHD
Sbjct:  139 RTQCQGLRAGLVAQQQTAGSHGGVASAIGGLCKHAKAALEHMRKKTVKDAREVKGDGWDWDAAKEHVATAKSDGHLSVVEHTAIMTMVERAEGSGVWPVYETEPNHFVVRDDRTRTSEHD 258          
BLAST of mRNA_C-linearis_contig11.1153.1 vs. uniprot
Match: D7FR12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR12_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.480e-38
Identity = 76/120 (63.33%), Postives = 87/120 (72.50%), Query Frame = 0
Query:    3 RTTC-GFSAGSVAQQQAATGHGGVASAVGGLCPHATAALEHIAMGTAMPAKEVKGDGWDVAAAKEAVEEKRREGHLSVVQYNAIVAMMEEAAARGVWPVYETETDCFVVRDGRTRTTEHD 121
            RT C G  AG VAQQQ A  HGGVASA+GGLC HA AALEH+   T   A+EVKGDGWD  AAKE V   + +GHLSVV++  I+ M+E A   GVWPVYETE + FVVRD RTRT+EHD
Sbjct:  103 RTQCQGLRAGLVAQQQTAGSHGGVASAIGGLCKHAKAALEHMRKKTVKDAREVKGDGWDWDAAKEHVATAKSDGHLSVVEHTVIMTMVERAEGSGVWPVYETEPNHFVVRDDRTRTSEHD 222          
BLAST of mRNA_C-linearis_contig11.1153.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.060e-18
Identity = 59/122 (48.36%), Postives = 74/122 (60.66%), Query Frame = 0
Query:    3 RTTC-GFSAGSVAQQQAATGHGGVASAVGGLCPHATAALEHIAMGTAMPAKEVKGD--GWDVAAAKEAVEEKRREGHLSVVQYNAIVAMMEEAAARGVWPVYETETDCFVVRDGRTRTTEHD 121
            RT C G +AG V+QQ+    HGGVASAVGGLC HA  ALEH+A  T   A  V G     D AAAKE V   +   HL+  + N +++++E A   GVWPV E E   ++V D R+RTTE D
Sbjct:   88 RTECQGATAGFVSQQRTVGSHGGVASAVGGLCQHAALALEHMAAKTMKRATSVLGGVASTDYAAAKELVTAAKLGSHLTAEECNDVMSIVEGAERSGVWPVVEVERHQYMVLDMRSRTTELD 209          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1153.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSV9_ECTSI4.530e-3964.17Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FR12_ECTSI1.480e-3863.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPP3_9PHAE1.060e-1848.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:123009..123702 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1153.1mRNA_C-linearis_contig11.1153.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig11 123009..123952 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig11.1153.1 ID=prot_C-linearis_contig11.1153.1|Name=mRNA_C-linearis_contig11.1153.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=121bp
MPRTTCGFSAGSVAQQQAATGHGGVASAVGGLCPHATAALEHIAMGTAMP
AKEVKGDGWDVAAAKEAVEEKRREGHLSVVQYNAIVAMMEEAAARGVWPV
YETETDCFVVRDGRTRTTEHD
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