prot_C-linearis_contig109.1137.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig109.1137.1
Unique Nameprot_C-linearis_contig109.1137.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length77
Homology
[Close]
BLAST of mRNA_C-linearis_contig109.1137.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.760e-11
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 0 
Query:    3 VVTALLGAEAQPDVNEVPLSPERPALYVAMVCGHEEVARRLVLARAGVTFEDPVDHCSVLH 63
            VV+ LL A AQ DVN V +S +R ALY A +CGHE+ ARRLV A A V FEDPV    VLH
Sbjct:   84 VVSTLLRAGAQWDVNVVSVSSKRSALYTATMCGHEDAARRLVAAGADVDFEDPVHGNPVLH 144
[Close]
BLAST of mRNA_C-linearis_contig109.1137.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 3.260e-11
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 0 
Query:    3 VVTALLGAEAQPDVNEVPLSPERPALYVAMVCGHEEVARRLVLARAGVTFEDP 55
            VV+ALL A AQPDVN V +S +R +LY A VCGH++ ARRL+ A A V FEDP
Sbjct:   84 VVSALLRAGAQPDVNVVSVSSKRSSLYTATVCGHKDAARRLITAGADVNFEDP 136
[Close]
BLAST of mRNA_C-linearis_contig109.1137.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 2.520e-6
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 0 
Query:    3 VVTALLGAEAQPDVNEVPLSPERPALYVAMVCGHEEVARRL 43
            VV+ALL A AQPDVN V +S +R ALY A VCGHE  AR L
Sbjct:   84 VVSALLRAGAQPDVNTVSISSKRSALYTATVCGHEHAARGL 124
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1137.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LS36_ECTSI1.760e-1160.66Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LRZ8_ECTSI3.260e-1162.26Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LRS0_ECTSI2.520e-665.85Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 1..75
e-value: 1.2E-7
score: 33.7
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 2..72
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..8
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 13..76
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 9..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..12
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 1..76
score: 9.675

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:483902..484132 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1137.1mRNA_C-linearis_contig109.1137.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig109 483816..484249 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig109.1137.1 ID=prot_C-linearis_contig109.1137.1|Name=mRNA_C-linearis_contig109.1137.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=77bp
MDVVTALLGAEAQPDVNEVPLSPERPALYVAMVCGHEEVARRLVLARAGV
TFEDPVDHCSVLHEAACDGLGQLVID*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom