mRNA_C-linearis_contig109.1137.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig109.1137.1
Unique NamemRNA_C-linearis_contig109.1137.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig109.1137.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 9.790e-11
Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:   72 SVGTRMDVVTALLGAEAQPDVNEVPLSPERPALYVAMVCGHEEVARRLVLARAGVTFEDPVDHCSVLH 275
            ++G    VV+ LL A AQ DVN V +S +R ALY A +CGHE+ ARRLV A A V FEDPV    VLH
Sbjct:   77 ALGGSEPVVSTLLRAGAQWDVNVVSVSSKRSALYTATMCGHEDAARRLVAAGADVDFEDPVHGNPVLH 144
[Close]
BLAST of mRNA_C-linearis_contig109.1137.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.790e-10
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:   72 SVGTRMDVVTALLGAEAQPDVNEVPLSPERPALYVAMVCGHEEVARRLVLARAGVTFEDP 251
            ++G    VV+ALL A AQPDVN V +S +R +LY A VCGH++ ARRL+ A A V FEDP
Sbjct:   77 ALGGSEPVVSALLRAGAQPDVNVVSVSSKRSSLYTATVCGHKDAARRLITAGADVNFEDP 136
[Close]
BLAST of mRNA_C-linearis_contig109.1137.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.200e-5
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 3 
Query:   72 SVGTRMDVVTALLGAEAQPDVNEVPLSPERPALYVAMVCGHEEVARRL 215
            ++G    VV+ALL A AQPDVN V +S +R ALY A VCGHE  AR L
Sbjct:   77 ALGGSEPVVSALLRAGAQPDVNTVSISSKRSALYTATVCGHEHAARGL 124
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LS36_ECTSI9.790e-1155.88Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LRZ8_ECTSI1.790e-1056.67Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LRS0_ECTSI1.200e-558.33Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:483816..484249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue8.8e-10
Seed eggNOG ortholog2880.D8LS36
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-11_004590.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size434
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1137.1prot_C-linearis_contig109.1137.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig109 483902..484132 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927423.203273-UTR-C-linearis_contig109:483815..4839011622927423.203273-UTR-C-linearis_contig109:483815..483901Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 483816..483901 +
1690879692.4287539-UTR-C-linearis_contig109:483815..4839011690879692.4287539-UTR-C-linearis_contig109:483815..483901Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 483816..483901 +
1622927423.226565-UTR-C-linearis_contig109:484132..4842491622927423.226565-UTR-C-linearis_contig109:484132..484249Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 484133..484249 +
1690879692.4545527-UTR-C-linearis_contig109:484132..4842491690879692.4545527-UTR-C-linearis_contig109:484132..484249Chordaria linearis ClinC8C monoicousUTRC-linearis_contig109 484133..484249 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927423.2160766-CDS-C-linearis_contig109:483901..4841321622927423.2160766-CDS-C-linearis_contig109:483901..484132Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 483902..484132 +
1690879692.44358-CDS-C-linearis_contig109:483901..4841321690879692.44358-CDS-C-linearis_contig109:483901..484132Chordaria linearis ClinC8C monoicousCDSC-linearis_contig109 483902..484132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig109.1137.1

>prot_C-linearis_contig109.1137.1 ID=prot_C-linearis_contig109.1137.1|Name=mRNA_C-linearis_contig109.1137.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=77bp
MDVVTALLGAEAQPDVNEVPLSPERPALYVAMVCGHEEVARRLVLARAGV
TFEDPVDHCSVLHEAACDGLGQLVID*
back to top

mRNA from alignment at C-linearis_contig109:483816..484249+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig109.1137.1 ID=mRNA_C-linearis_contig109.1137.1|Name=mRNA_C-linearis_contig109.1137.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=434bp|location=Sequence derived from alignment at C-linearis_contig109:483816..484249+ (Chordaria linearis ClinC8C monoicous)
ACAGTCTGGGGCCGACGGTCGCGCAGGGTGGAGGGGATGTCGAGGCCGCA
CCCTTCTTCACGCGGCTGCTGTCGGTGGGAACGCGGATGGATGTGGTGAC
GGCCTTGCTTGGAGCCGAAGCTCAGCCGGACGTGAACGAAGTGCCTCTGT
CCCCAGAGAGGCCGGCTCTGTACGTGGCAATGGTGTGCGGCCACGAAGAG
GTGGCGAGGCGTTTGGTCTTGGCCCGGGCGGGCGTGACTTTTGAGGACCC
CGTAGACCATTGCTCCGTGCTCCACGAGGCAGCTTGCGATGGTCTTGGAC
AGCTCGTGATTGATTGATCTGCTGACAGCCGGTGCAGACTCGAACTCTGT
TTTCGGCCCAAGTGACAGCACTACTCTCCATCAGGCTGCAGGCGCCGGGC
AGTGCGGCAACATCTCTGGGCTGTTGCTTCGAGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig109:483816..484249+

>mRNA_C-linearis_contig109.1137.1 ID=mRNA_C-linearis_contig109.1137.1|Name=mRNA_C-linearis_contig109.1137.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at C-linearis_contig109:483816..484249+ (Chordaria linearis ClinC8C monoicous)
ATGGATGTGGTGACGGCCTTGCTTGGAGCCGAAGCTCAGCCGGACGTGAA
CGAAGTGCCTCTGTCCCCAGAGAGGCCGGCTCTGTACGTGGCAATGGTGT
GCGGCCACGAAGAGGTGGCGAGGCGTTTGGTCTTGGCCCGGGCGGGCGTG
ACTTTTGAGGACCCCGTAGACCATTGCTCCGTGCTCCACGAGGCAGCTTG
CGATGGTCTTGGACAGCTCGTGATTGATTGAATGGATGTGGTGACGGCCT
TGCTTGGAGCCGAAGCTCAGCCGGACGTGAACGAAGTGCCTCTGTCCCCA
GAGAGGCCGGCTCTGTACGTGGCAATGGTGTGCGGCCACGAAGAGGTGGC
GAGGCGTTTGGTCTTGGCCCGGGCGGGCGTGACTTTTGAGGACCCCGTAG
ACCATTGCTCCGTGCTCCACGAGGCAGCTTGCGATGGTCTTGGACAGCTC
GTGATTGATTGA
back to top