prot_C-linearis_contig109.1110.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig109.1110.1
Unique Nameprot_C-linearis_contig109.1110.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length388
Homology
BLAST of mRNA_C-linearis_contig109.1110.1 vs. uniprot
Match: A0A6H5LJ65_9PHAE (DUF202 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ65_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 8.900e-73
Identity = 176/394 (44.67%), Postives = 201/394 (51.02%), Query Frame = 0
Query:    1 MARRSVTIVASDGKREGISWYDGATEGAVLRCALVALGLPPSSTGTAHLIWKSGDMVDFGKPITDGVTLHLDVVAHAAPASHHXXXXXXXXXXXXXXPGAVPSGYSIDGAGYGAGGGSAVAQRRVGSASTATGEGSGAVVSPRGGVHQGPDRRRQRRAEPSELSLAKRRALLSLRRLFGVSGGSSSXXXRGGFLSSFLEKAMSASDSEGEQERRPLLGLTRASSSTSLLSPSSPSPSMSGGGERGADEVEGGGYNP----------DHQRNSILKFKRINAHLANERTLLAWVRCVGKMFTVGVLSLSLAGAAGPPAFVLCFSAIGTVYVAMGPYVVFVGANRFHQATDVMQGSVHDAYSYFSGGQLRSLSFLMMALAAITMGLMAMQLLASVE 384
            MARRSVTIVASDG+REGISWYDGATE AVLRCAL+ALGLP  S   AHL+ +SGD+VD G PITDG TLHLD V   A  S                  A    Y+  G  +G                      S                          L+  +    +S+     VSGG      R    S+FLE+     DS+ E ERRPLL   R  SSTSL                                      + QR +ILK KRINAHLANERTLLAWVR VGKMFT GVL LSLAG    P + +CF   G VY AMGPYVVFVGA RFHQA  VM GSV+D YS+FSG  LR L++LMM LA +T+ LMA QL A + 
Sbjct:    1 MARRSVTIVASDGRREGISWYDGATEAAVLRCALLALGLPLKSA--AHLLRQSGDIVDLGTPITDGATLHLDTVRELALPSQE----------------AAGDVYASGGHDHGE---------------------SSXXXXXXXXXXXXXXXXXXXXXXXXXLATTRCGGSVSVT----VSGGGGDCRQR---PSTFLERG----DSDEELERRPLLRTGRVPSSTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQQRLAILKLKRINAHLANERTLLAWVRAVGKMFTAGVLCLSLAGDGYSPTYTVCFVGTGIVYFAMGPYVVFVGAKRFHQAAQVMNGSVYDTYSFFSGSHLRGLTYLMMTLAVVTVALMATQLSADLS 344          
BLAST of mRNA_C-linearis_contig109.1110.1 vs. uniprot
Match: D8LKT6_ECTSI (DUF202 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT6_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 1.130e-54
Identity = 114/196 (58.16%), Postives = 128/196 (65.31%), Query Frame = 0
Query:  194 LSSFLEKAMSASDSEGEQERRPLLGLTRASSSTSLLSPSSPSPSMSGGGERGADEVEGGGYN----------PDHQRNSILKFKRINAHLANERTLLAWVRCVGKMFTVGVLSLSLAGAAGPPAFVLCFSAIGTVYVAMGPYVVFVGANRFHQATDVMQGSVHDAYSYFSGGQLRSLSFLMMALAAITMGLMAMQL 379
            LS FLE+     DSE E ERRPLL   R  SSTSLLS +S S S+S    RG      G             P+ QR +ILK KRINAHLANERTLLAWVR VGKMFT GVL LSLA     P + +CF  +G VY AMGPYVVFVGA RFHQA  VM+GSVHD YS+FSG   R L++LMM LA +T+ LMA QL
Sbjct:    2 LSRFLERG----DSEEELERRPLLRTGRVPSSTSLLSTASSSSSVSSLFPRGTPRENDGXXXXXXXXXXXXXPEQQRLAILKLKRINAHLANERTLLAWVRAVGKMFTAGVLCLSLADDGYSPTYRVCFVGMGMVYFAMGPYVVFVGAKRFHQAAQVMKGSVHDTYSFFSGSHQRGLTYLMMTLAVVTVALMATQL 193          
BLAST of mRNA_C-linearis_contig109.1110.1 vs. uniprot
Match: D8LKT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT5_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.410e-29
Identity = 60/78 (76.92%), Postives = 65/78 (83.33%), Query Frame = 0
Query:    1 MARRSVTIVASDGKREGISWYDGATEGAVLRCALVALGLPPSSTGTAHLIWKSGDMVDFGKPITDGVTLHLDVVAHAA 78
            MARRSVTIVASDG+REGISWYDGATE AVLRCAL+ALGLP  S   AHL+W+SGD+VD G PITDG TLHLD V   A
Sbjct:    1 MARRSVTIVASDGRREGISWYDGATEAAVLRCALLALGLPLKSA--AHLLWQSGDIVDLGTPITDGATLHLDTVRELA 76          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig109.1110.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LJ65_9PHAE8.900e-7344.67DUF202 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LKT6_ECTSI1.130e-5458.16DUF202 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LKT5_ECTSI1.410e-2976.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003807Domain of unknown function DUF202PFAMPF02656DUF202coord: 272..336
e-value: 4.2E-8
score: 33.5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 382..387
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 332..359
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 279..301
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 307..331
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 360..381
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..278
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 302..306
NoneNo IPR availableTMHMMTMhelixcoord: 307..329
NoneNo IPR availableTMHMMTMhelixcoord: 359..381
NoneNo IPR availableTMHMMTMhelixcoord: 280..302

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig109contigC-linearis_contig109:223382..226249 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig109.1110.1mRNA_C-linearis_contig109.1110.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig109 222603..226473 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig109.1110.1 ID=prot_C-linearis_contig109.1110.1|Name=mRNA_C-linearis_contig109.1110.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=388bp
MARRSVTIVASDGKREGISWYDGATEGAVLRCALVALGLPPSSTGTAHLI
WKSGDMVDFGKPITDGVTLHLDVVAHAAPASHHDGSGGGGFYSGGGGPGA
VPSGYSIDGAGYGAGGGSAVAQRRVGSASTATGEGSGAVVSPRGGVHQGP
DRRRQRRAEPSELSLAKRRALLSLRRLFGVSGGSSSGGGRGGFLSSFLEK
AMSASDSEGEQERRPLLGLTRASSSTSLLSPSSPSPSMSGGGERGADEVE
GGGYNPDHQRNSILKFKRINAHLANERTLLAWVRCVGKMFTVGVLSLSLA
GAAGPPAFVLCFSAIGTVYVAMGPYVVFVGANRFHQATDVMQGSVHDAYS
YFSGGQLRSLSFLMMALAAITMGLMAMQLLASVEFAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003807DUF202