prot_C-linearis_contig109.1098.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig109.1098.1
Unique Name	prot_C-linearis_contig109.1098.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	106

Homology

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BLAST of mRNA_C-linearis_contig109.1098.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 9.620e-30
Identity = 66/89 (74.16%), Postives = 71/89 (79.78%), Query Frame = 0

Query:    1 RLSLEAKGSHGLMDASPLKRAMDRHSDRFAGNLQQDAHEFLSDLINVLHDETQPRLDKAAACVEKNPAAISVV--GGDNAGESAVVAGA 87
            RLSLEA+GSHGLMDASPLKRAMDRHSDRFAGNLQQDAHEFL DL+NVLH+ETQPRLD AA  V K  AA + V  GGD   +  V  GA
Sbjct:  364 RLSLEARGSHGLMDASPLKRAMDRHSDRFAGNLQQDAHEFLGDLVNVLHEETQPRLDIAAGYVGKPLAAAAAVSGGGDKGKKVEVAVGA 452

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BLAST of mRNA_C-linearis_contig109.1098.1 vs. uniprot
Match: A0A6H5KUE2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE2_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.010e-27
Identity = 58/69 (84.06%), Postives = 61/69 (88.41%), Query Frame = 0

Query:    1 RLSLEAKGSHGLMDASPLKRAMDRHSDRFAGNLQQDAHEFLSDLINVLHDETQPRLDKAAACVEKNPAA 69
            RLSLEA+GSHGLMDASPLKRAMDRHSDRFAGNLQQDAHEFL DL+N LH+ETQPRLD AA  V K  AA
Sbjct:  469 RLSLEARGSHGLMDASPLKRAMDRHSDRFAGNLQQDAHEFLGDLVNALHEETQPRLDIAAGYVGKPLAA 537

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BLAST of mRNA_C-linearis_contig109.1098.1 vs. uniprot
Match: A0A835YKZ9_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.130e-11
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 0

Query:    1 RLSLEAKGS-HGLMDASPLKRAMDRHSDRFAGNLQQDAHEFLSDLINVLHDETQP 54
            +L+L A G  HG++    LK AMD HSDRFAGNLQQDAHEF  DLIN L +E +P
Sbjct:  443 QLALVAHGGRHGVLTPHRLKAAMDAHSDRFAGNLQQDAHEFFGDLINALQEEMEP 497

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BLAST of mRNA_C-linearis_contig109.1098.1 vs. uniprot
Match: K0T238_THAOC (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T238_THAOC)

HSP 1 Score: 50.4 bits (119), Expect = 6.590e-5
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 0

Query:   14 DASPLKRAMDRHSDRFAGNLQQDAHEFLSDLINVLHDETQ 53
            D   LKR MD  +D+FAG LQ+DAHEF +DLI+ LHDE +
Sbjct:  372 DPVALKRQMDVITDKFAGYLQRDAHEFFADLIDFLHDELE 411

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BLAST of mRNA_C-linearis_contig109.1098.1 vs. uniprot
Match: A0A7S3Q7Y5_9STRA (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q7Y5_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 9.130e-5
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 0

Query:   18 LKRAMDRHSDRFAGNLQQDAHEFLSDLINVLHDETQPRLD 57
            LK+AMD  +D+FAG  Q+DAHEFLSDLI+++H+E    +D
Sbjct:  567 LKKAMDGLTDKFAGYEQRDAHEFLSDLIDLMHEELSRTVD 606

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig109.1098.1 vs. uniprot

BLAST of mRNA_C-linearis_contig109.1098.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
D7G2P5_ECTSI	9.620e-30	74.16	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KUE2_9PHAE	1.010e-27	84.06	USP domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A835YKZ9_9STRA	4.130e-11	61.82	USP domain-containing protein n=1 Tax=Tribonema mi...	[more]
K0T238_THAOC	6.590e-5	60.00	Ubiquitin carboxyl-terminal hydrolase (Fragment) n...	[more]
A0A7S3Q7Y5_9STRA	9.130e-5	57.50	Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Chae...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	PFAM	PF00443	UCH	coord: 15..59 e-value: 6.1E-6 score: 25.9
None	No IPR available	GENE3D	3.90.70.10		coord: 2..101 e-value: 7.9E-9 score: 37.1
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 7..55

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig109	contig	C-linearis_contig109:153335..154065 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig109.1098.1	mRNA_C-linearis_contig109.1098.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig109 153333..154065 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig109.1098.1 ID=prot_C-linearis_contig109.1098.1|Name=mRNA_C-linearis_contig109.1098.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=106bp
RLSLEAKGSHGLMDASPLKRAMDRHSDRFAGNLQQDAHEFLSDLINVLHD
ETQPRLDKAAACVEKNPAAISVVGGDNAGESAVVAGAAAARQGHGRKRVA
SGEAKK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001394	Peptidase_C19_UCH
IPR038765	Papain-like_cys_pep_sf