prot_C-linearis_contig107.1030.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig107.1030.1
Unique Nameprot_C-linearis_contig107.1030.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length325
Homology
BLAST of mRNA_C-linearis_contig107.1030.1 vs. uniprot
Match: D8LPN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN8_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 8.360e-75
Identity = 123/190 (64.74%), Postives = 142/190 (74.74%), Query Frame = 0
Query:   40 VMYAP-GAKYTVVDVAGGDRCCGLLPPIALNLFAAGIPVEDIVSAVKDNITDDMKKLMQTLRGKVVEMSRGRFTFLDDMPEYEQTLDGEELADFADVVGNPNYVILTRGMWERVMLFLTGMFDGKAVMLMGEVLHLDGLRIVKHENGILAPCDSGGPLPREHCPMILHDR-GHFVALVPFREASDSDASG 227
            VM  P G KY VVDVAG DRCC +L PIALN+F   IP+EDIVS+V  N+TDDM K + TLRGKVVEMSR  F+F D          GEELADF DVV NP +VI+ RGMWE+VML   G FDG+A +LMG+VL LDG+RIVKH+NGILAPCD G PLP  HCPM+LHD  GHF AL+ FRE S+S+ASG
Sbjct:    4 VMSTPEGVKYRVVDVAGRDRCCEILAPIALNMFRENIPLEDIVSSVSGNLTDDMMKYVPTLRGKVVEMSRVFFSFAD----------GEELADFDDVVDNPMWVIMARGMWEKVMLCFRGQFDGRAFLLMGKVLPLDGIRIVKHDNGILAPCDVGVPLPSGHCPMVLHDGYGHFKALLHFRETSESEASG 183          
BLAST of mRNA_C-linearis_contig107.1030.1 vs. uniprot
Match: D8LK60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK60_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 4.090e-41
Identity = 94/192 (48.96%), Postives = 119/192 (61.98%), Query Frame = 0
Query:   32 PAP---RENFDVMYAP-GAKYTVVDVAGGDRCCGLLPPIALNLFAAGIPVEDIVSAVKDNITDDMKKLMQTLRGKVVEMSRGRFTFLDDMPEYEQTLDGEELADFADVVGNPNYVILTRGMWERVMLFLTGMFDGKAVMLMGEVLHLDGLRIVKHENGILAPCDSGGPLPREHCPMILHDR-GHFVALVPFR 218
            PAP   R+N  V +   GA+Y  +DV GG  C  LL  IA+ + AAG P E+I +AV   +TDDMK+ +Q+LR   V     +F F D          GEELA F D+V +P +VI+TR MWE V L  TG  DG+AV L+ + L L G RIVKHE+G L PCD+GGP+  E CPM+LHD  GHF AL+P R
Sbjct:   18 PAPPKLRDNSRVYFTTEGAQYMALDVGGGGLCA-LLGVIAVAMDAAGTPCEEIFAAVSGKLTDDMKEYVQSLRA--VSTCGDQFAFKD----------GEELASFDDIVHDPMWVIVTRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMMLHDGYGHFKALIPLR 196          
BLAST of mRNA_C-linearis_contig107.1030.1 vs. uniprot
Match: D8LH64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH64_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.240e-34
Identity = 74/148 (50.00%), Postives = 93/148 (62.84%), Query Frame = 0
Query:   72 AAGIPVEDIVSAVKDNITDDMKKLMQTLRGKVVEMSRGRFTFLDDMPEYEQTLDGEELADFADVVGNPNYVILTRGMWERVMLFLTGMFDGKAVMLMGEVLHLDGLRIVKHENGILAPCDSGGPLPREHCPMILHDR-GHFVALVPFR 218
            AAG P E+I   V   +TDDMK+ +Q+LR  +V      F F D          GEELA F D+V +P +VI+TR MWE V L  TG  DG+AV L+ + L L G RIVKHE+G L PCD+GGP+  + CPM+LHD  GHF AL+P R
Sbjct:    3 AAGTPCEEIFVGVSGELTDDMKEYVQSLRANIVSTCGDHFAFKD----------GEELASFDDIVHDPMWVIVTRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSQECPMMLHDGYGHFKALIPLR 140          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1030.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LPN8_ECTSI8.360e-7564.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LK60_ECTSI4.090e-4148.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LH64_ECTSI1.240e-3450.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:175653..176627 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1030.1mRNA_C-linearis_contig107.1030.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig107 175640..176897 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig107.1030.1 ID=prot_C-linearis_contig107.1030.1|Name=mRNA_C-linearis_contig107.1030.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=325bp
MGRGRSNARRNNNKNKKNVTPTTPDTPDTPEPAPRENFDVMYAPGAKYTV
VDVAGGDRCCGLLPPIALNLFAAGIPVEDIVSAVKDNITDDMKKLMQTLR
GKVVEMSRGRFTFLDDMPEYEQTLDGEELADFADVVGNPNYVILTRGMWE
RVMLFLTGMFDGKAVMLMGEVLHLDGLRIVKHENGILAPCDSGGPLPREH
CPMILHDRGHFVALVPFREASDSDASGSTDVESEASDDTDGESGASGGTD
GDSGASDGESEASGGTDGDESSDTPMQGRRWDVDEFFGDDKTYLAETSVL
WDGGQSSTRNSRGHGLSQDQPRLR*
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