prot_C-linearis_contig107.1028.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig107.1028.1
Unique Nameprot_C-linearis_contig107.1028.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length412
Homology
BLAST of mRNA_C-linearis_contig107.1028.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 6.310e-9
Identity = 48/152 (31.58%), Postives = 77/152 (50.66%), Query Frame = 0
Query:   24 PRFGGFYDQDGYNGKGPSRKVLRAAWDVVFHQ------------RQPYYRRSSQLVDGEILSIDETHKVMKGVRI----DGNKV--FNGLFTILNEHNQVVAQCSKRSVTVGSLE-EARSLFEGVSKRYLLLGLPKIKVVYSDNCCSDRKLV 156
            P+F    D  G++   PS   L   W   F++            R+ Y +R +QLVDG  L+ D + K  K +R+    DG +    +G+FTI+NE++QVV   +  + +V  L+ + + +F    KR+L  G     + YSD CC DR+L+
Sbjct:  203 PKFSSIGDPSGFHSSPPSAHYLGDIWHKGFYETPVVQADGCSWTREEYLQRRAQLVDGCSLAGDASFKYAKVIRLSAGADGTRARPVHGIFTIMNEYDQVVFSKAMTTASVHDLKNDLKMMFV---KRFLGHGFKLPVIFYSDECCDDRQLL 351          
BLAST of mRNA_C-linearis_contig107.1028.1 vs. uniprot
Match: A0A8H7QF80_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7QF80_9FUNG)

HSP 1 Score: 68.9 bits (167), Expect = 7.810e-9
Identity = 48/165 (29.09%), Postives = 77/165 (46.67%), Query Frame = 0
Query:    2 ARKRKQGQGSLFAADTATLRNPPRFGGFYDQDGYNGKGPSRKVLRAAWDVVFHQRQPYYRRSSQLVDGEILSIDETHKVMKGVR-IDGNKVFNGLFTILNEHNQVVAQCSKRSVTVGSLEEARSLFEGVSKRYLLLGLPKIKVVYSDNCCSDRKLVQETWPQRSV 165
            A K K G  S+    T      P F  F +Q GY G  P++  +R  +  +  + +PY  +   L+ G++L  D + K++K +  +DG  +FN L+TI NE  ++        V   SLE  +  F+ + + Y   G     V Y+DN   DRK ++   P   V
Sbjct:  262 AMKAKYGDRSITRFFTMPTVIEP-FSPFDNQKGYAGYTPTQTYIRTIYTAIISKLRPYMDKQMMLLGGKVLKGDHSFKIIKHMASVDGTNMFNALYTICNEFEEIRMMLL---VPSKSLEHLKWSFQKMMQAYEGYGHDSPVVFYTDNVRGDRKFLENVIPSLKV 422          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1028.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIV2_ECTSI6.310e-931.583'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A8H7QF80_9FUNG7.810e-929.093'-5' exonuclease domain-containing protein n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..168
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 190..412
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 169..189
NoneNo IPR availableTMHMMTMhelixcoord: 167..189

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:170396..179368 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1028.1mRNA_C-linearis_contig107.1028.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig107 170396..179591 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig107.1028.1 ID=prot_C-linearis_contig107.1028.1|Name=mRNA_C-linearis_contig107.1028.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=412bp
MARKRKQGQGSLFAADTATLRNPPRFGGFYDQDGYNGKGPSRKVLRAAWD
VVFHQRQPYYRRSSQLVDGEILSIDETHKVMKGVRIDGNKVFNGLFTILN
EHNQVVAQCSKRSVTVGSLEEARSLFEGVSKRYLLLGLPKIKVVYSDNCC
SDRKLVQETWPQRSVSVSIFFFLFFFFFVFDFEVVLAMVKMASAAPASAL
APTVPTDPASIRPSTKDDISFAWQRPVFLPTRVDQLTYNLGGTVATDIVT
SIIYRAPDSEITTALHKAARLRVISPASVSEWLGQNVSRQGRIRAVAEEV
IDLEDFSEGLFLDIQSRCNKEEEVVMVAGKKGAACDLSSFVDAGKACEII
EGLLSQQDDILSLQKENQIFRKYKKVQGGWREHRIKSMQLEQRRTEYLRL
KHAREDVSQTKP
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