prot_C-linearis_contig106.989.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig106.989.1
Unique Nameprot_C-linearis_contig106.989.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length239
Homology
[Close]
BLAST of mRNA_C-linearis_contig106.989.1 vs. uniprot
Match: D7FSR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR7_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.010e-18
Identity = 106/245 (43.27%), Postives = 119/245 (48.57%), Query Frame = 0 
Query:   15 GPSLVEWSPVYSNYFAYSSGKDGSGIDLYRVIRSAPG-DAELLGPRGSITDRRPPGQQLDPNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPYRTGTTTFHESINSPPESSGGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXVDA-----------------ARARRVASEGGSREGRMPFSGGSGAGAGALLFPPVGLSGGSGDGYDN--SPENPFAGAGPEYHHH-PDGVPLVAAAGG 238
            GPSLV+WSPVYSNYFAYSSG++ +GIDLYRV  S PG DAEL GPRGS+ DRRP G                               XXXX   G YR  + TF++   + PE SGGS +        XXXXXXXXXXXXXXXXXXX                    AR RR+AS  G                             S D + N   PENPFAGAGPEYHHH    +P   A GG
Sbjct:   38 GPSLVQWSPVYSNYFAYSSGRERNGIDLYRVSWSVPGGDAELPGPRGSVNDRRPSGGDXX---------------------------XXXXMQQGTYRAASMTFYDP--NAPEGSGGSTIAGLSLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVRRLASGSGXXXXXXXXXX---XXXXXXXXXXXXXXXXSADVFGNVSGPENPFAGAGPEYHHHLQQQLPAEGAVGG 250
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.989.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSR7_ECTSI2.010e-1843.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 75..105
NoneNo IPR availablePANTHERPTHR12320:SF1PROTEIN PHOSPHATASE PTC7 HOMOLOGcoord: 66..191
NoneNo IPR availableSUPERFAMILY81995beta-sandwich domain of Sec23/24coord: 66..125
IPR039123Protein phosphatase 2CPANTHERPTHR12320PROTEIN PHOSPHATASE 2Ccoord: 66..191

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:315319..316657 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.989.1mRNA_C-linearis_contig106.989.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig106 315318..316657 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig106.989.1 ID=prot_C-linearis_contig106.989.1|Name=mRNA_C-linearis_contig106.989.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=239bp
GGGALERAGGGKAGGPSLVEWSPVYSNYFAYSSGKDGSGIDLYRVIRSAP
GDAELLGPRGSITDRRPPGQQLDPNQQQQQQQQQQQQHQQQQQQQQQQQQ
QQQQQQQGPYRTGTTTFHESINSPPESSGGSGVAGALGAAVAAAAAAAAA
AAAAAAPAGPVDAARARRVASEGGSREGRMPFSGGSGAGAGALLFPPVGL
SGGSGDGYDNSPENPFAGAGPEYHHHPDGVPLVAAAGGG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039123PPTC7