mRNA_C-linearis_contig106.989.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig106.989.1
Unique NamemRNA_C-linearis_contig106.989.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig106.989.1 vs. uniprot
Match: D7FSR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR7_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.010e-18
Identity = 106/245 (43.27%), Postives = 119/245 (48.57%), Query Frame = 1 
Query:   43 GPSLVEWSPVYSNYFAYSSGKDGSGIDLYRVIRSAPG-DAELLGPRGSITDRRPPGQQLDPNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPYRTGTTTFHESINSPPESSGGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXVDA-----------------ARARRVASEGGSREGRMPFSGGSGAGAGALLFPPVGLSGGSGDGYDN--SPENPFAGAGPEYHHH-PDGVPLVAAAGG 714
            GPSLV+WSPVYSNYFAYSSG++ +GIDLYRV  S PG DAEL GPRGS+ DRRP G                               XXXX   G YR  + TF++   + PE SGGS +        XXXXXXXXXXXXXXXXXXX                    AR RR+AS  G                             S D + N   PENPFAGAGPEYHHH    +P   A GG
Sbjct:   38 GPSLVQWSPVYSNYFAYSSGRERNGIDLYRVSWSVPGGDAELPGPRGSVNDRRPSGGDXX---------------------------XXXXMQQGTYRAASMTFYDP--NAPEGSGGSTIAGLSLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVRRLASGSGXXXXXXXXXX---XXXXXXXXXXXXXXXXSADVFGNVSGPENPFAGAGPEYHHHLQQQLPAEGAVGG 250
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSR7_ECTSI2.010e-1843.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:315318..316657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size718
Cds size717
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927397.9121196-CDS-C-linearis_contig106:315318..3157111622927397.9121196-CDS-C-linearis_contig106:315318..315711Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 315319..315711 -
1690879676.8019178-CDS-C-linearis_contig106:315318..3157111690879676.8019178-CDS-C-linearis_contig106:315318..315711Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 315319..315711 -
1622927397.925278-CDS-C-linearis_contig106:316333..3166571622927397.925278-CDS-C-linearis_contig106:316333..316657Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 316334..316657 -
1690879676.8142781-CDS-C-linearis_contig106:316333..3166571690879676.8142781-CDS-C-linearis_contig106:316333..316657Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 316334..316657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.989.1prot_C-linearis_contig106.989.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig106 315319..316657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig106.989.1

>prot_C-linearis_contig106.989.1 ID=prot_C-linearis_contig106.989.1|Name=mRNA_C-linearis_contig106.989.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=239bp
GGGALERAGGGKAGGPSLVEWSPVYSNYFAYSSGKDGSGIDLYRVIRSAP
GDAELLGPRGSITDRRPPGQQLDPNQQQQQQQQQQQQHQQQQQQQQQQQQ
QQQQQQQGPYRTGTTTFHESINSPPESSGGSGVAGALGAAVAAAAAAAAA
AAAAAAPAGPVDAARARRVASEGGSREGRMPFSGGSGAGAGALLFPPVGL
SGGSGDGYDNSPENPFAGAGPEYHHHPDGVPLVAAAGGG
back to top

mRNA from alignment at C-linearis_contig106:315318..316657-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig106.989.1 ID=mRNA_C-linearis_contig106.989.1|Name=mRNA_C-linearis_contig106.989.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1340bp|location=Sequence derived from alignment at C-linearis_contig106:315318..316657- (Chordaria linearis ClinC8C monoicous)
GGGGGCGGCGCGCTGGAACGGGCCGGCGGCGGCAAGGCCGGCGGGCCGTC
GCTAGTGGAGTGGTCCCCCGTGTACTCGAACTACTTCGCCTACTCCAGCG
GCAAGGATGGCAGCGGCATCGACCTCTACCGGGTCATACGGTCGGCCCCC
GGTGATGCCGAGCTGTTGGGGCCGAGGGGATCCATCACCGACAGACGGCC
GCCAGGCCAGCAGCTTGACCCCAACCAACAGCAGCAGCAGCAGCAGCAAC
AACAACAACAACACCAACAACAACAACAACAACAACAACAACAACAACAG
CAGCAGCAGCAGCAGCAGCAGGGGGTTAGTAGGGCTGAGGGTTTTGTGTC
CAGGTCGAATTGTAGGACAAGGCAAAATGGAGGCTTAACTTAGATCGAGA
CGGGTGTCCGCGATGCATTTGTACTTTGTAGTACCTTCCCAAACGCATGG
AGAGTTTGTTGCAAGCATGCCCGTAAGAGTTGCCGCCGGCGCCGCCCTGC
TTTCGCCCGCCCAGGCGGAAGGCGGCGATCGGGGTCGACCAATGTACACC
AACTACTGCCGTATAGGCAACTGAGGTTAGCGCTTGTATTGCTGTGGGCG
GGGGGCAGCCAACTGATCTTAGCGCTGGCAGTGCTGTAGGTGGGGGAGAG
CTACACTACACAGAGTAGTTGGGTTTTTATTTGCCCTTTTCCTGCAAGCA
AGCCTCGTGGTATTTCGCGCTCAGCGTGCCTCGATTACTACACCTTTCCT
GTTGGTTAATCTTGTTCGCGTCTCCGTGCCTAAAAATCTCCTGACTCCTC
ACCCCCCGCCCCCTGTCGTCTGCACCCCCCTTCTCTTTCCCCGTGCCTGT
TGTATTTCACCATGTCACTGGATATTCTTCTTGTTGTGCCGTCTCTGTGT
GTCTATGGTTGTGTCATTCGTATTTACTCGAAAAACGAAACAACAGCCGT
ACCGCACGGGCACGACGACGTTCCACGAGTCCATCAACAGTCCGCCAGAG
AGCAGCGGCGGGAGCGGCGTCGCCGGCGCTCTGGGAGCCGCCGTGGCAGC
GGCAGCGGCGGCGGCGGCGGCTGCGGCGGCGGCCGCAGCACCCGCGGGCC
CTGTAGACGCCGCCAGGGCTCGCCGAGTAGCCAGTGAGGGCGGCAGTCGG
GAAGGACGAATGCCGTTCTCGGGCGGCAGCGGGGCCGGGGCCGGGGCGTT
GCTCTTCCCCCCGGTGGGGTTAAGCGGCGGCAGCGGCGACGGGTACGACA
ACAGCCCCGAGAATCCGTTCGCGGGCGCGGGGCCCGAGTACCACCACCAC
CCCGACGGGGTCCCGCTAGTCGCGGCAGCCGGCGGCGGCG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig106:315318..316657-

>mRNA_C-linearis_contig106.989.1 ID=mRNA_C-linearis_contig106.989.1|Name=mRNA_C-linearis_contig106.989.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1434bp|location=Sequence derived from alignment at C-linearis_contig106:315318..316657- (Chordaria linearis ClinC8C monoicous)
GGGGGCGGCGCGCTGGAACGGGCCGGCGGCGGCAAGGCCGGCGGGCCGTC
GCTAGTGGAGTGGTCCCCCGTGTACTCGAACTACTTCGCCTACTCCAGCG
GCAAGGATGGCAGCGGCATCGACCTCTACCGGGTCATACGGTCGGCCCCC
GGTGATGCCGAGCTGTTGGGGCCGAGGGGATCCATCACCGACAGACGGCC
GCCAGGCCAGCAGCTTGACCCCAACCAACAGCAGCAGCAGCAGCAGCAAC
AACAACAACAACACCAACAACAACAACAACAACAACAACAACAACAACAG
CAGCAGCAGCAGCAGCAGCAGGGGGGGGGCGGCGCGCTGGAACGGGCCGG
CGGCGGCAAGGCCGGCGGGCCGTCGCTAGTGGAGTGGTCCCCCGTGTACT
CGAACTACTTCGCCTACTCCAGCGGCAAGGATGGCAGCGGCATCGACCTC
TACCGGGTCATACGGTCGGCCCCCGGTGATGCCGAGCTGTTGGGGCCGAG
GGGATCCATCACCGACAGACGGCCGCCAGGCCAGCAGCTTGACCCCAACC
AACAGCAGCAGCAGCAGCAGCAACAACAACAACAACACCAACAACAACAA
CAACAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGGGGCC
GTACCGCACGGGCACGACGACGTTCCACGAGTCCATCAACAGTCCGCCAG
AGAGCAGCGGCGGGAGCGGCGTCGCCGGCGCTCTGGGAGCCGCCGTGGCA
GCGGCAGCGGCGGCGGCGGCGGCTGCGGCGGCGGCCGCAGCACCCGCGGG
CCCTGTAGACGCCGCCAGGGCTCGCCGAGTAGCCAGTGAGGGCGGCAGTC
GGGAAGGACGAATGCCGTTCTCGGGCGGCAGCGGGGCCGGGGCCGGGGCG
TTGCTCTTCCCCCCGGTGGGGTTAAGCGGCGGCAGCGGCGACGGGTACGA
CAACAGCCCCGAGAATCCGTTCGCGGGCGCGGGGCCCGAGTACCACCACC
ACCCCGACGGGGTCCCGCTAGTCGCGGCAGCCGGCGGCGGCCCGTACCGC
ACGGGCACGACGACGTTCCACGAGTCCATCAACAGTCCGCCAGAGAGCAG
CGGCGGGAGCGGCGTCGCCGGCGCTCTGGGAGCCGCCGTGGCAGCGGCAG
CGGCGGCGGCGGCGGCTGCGGCGGCGGCCGCAGCACCCGCGGGCCCTGTA
GACGCCGCCAGGGCTCGCCGAGTAGCCAGTGAGGGCGGCAGTCGGGAAGG
ACGAATGCCGTTCTCGGGCGGCAGCGGGGCCGGGGCCGGGGCGTTGCTCT
TCCCCCCGGTGGGGTTAAGCGGCGGCAGCGGCGACGGGTACGACAACAGC
CCCGAGAATCCGTTCGCGGGCGCGGGGCCCGAGTACCACCACCACCCCGA
CGGGGTCCCGCTAGTCGCGGCAGCCGGCGGCGGC
back to top