prot_C-linearis_contig106.970.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig106.970.1
Unique Nameprot_C-linearis_contig106.970.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length502
Homology
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BLAST of mRNA_C-linearis_contig106.970.1 vs. uniprot
Match: D8LCJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ7_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.810e-19
Identity = 65/125 (52.00%), Postives = 74/125 (59.20%), Query Frame = 0 
Query:   25 RKVRCWQFHLCGISNGDKKEAHAAALASFRYAYTAAKRLTVSP-TP----GCRD--GCRDEVKHKRSCTGNIPSPDSTTSQRYCCVVVEVQFSGPQSAERPALLLNRLFQAERVAVHPVALRRGR 142
            RK RCWQFH+ G+S  D K    AALA+F   YTA   LTV P TP    G R   G  DE   K +  G+  S  S T      VVVEV+FSGPQ A+RPALLL  L + E VA HPV+LRRGR
Sbjct:   22 RKQRCWQFHVSGVSISDTKAQQEAALATFTDTYTATTWLTVRPATPRGPVGRRKKYGTLDETDRKTTEKGDSESSSSGTRS----VVVEVRFSGPQPADRPALLLRSLLKGESVAAHPVSLRRGR 142
[Close]
BLAST of mRNA_C-linearis_contig106.970.1 vs. uniprot
Match: A0A6H5JPU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU4_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.310e-11
Identity = 52/102 (50.98%), Postives = 60/102 (58.82%), Query Frame = 0 
Query:   48 AALASFRYAYTAAKRLTVSPTP-----GCRD--GCRDEVKHKRSCTGNIPSPDSTTSQRYCCVVVEVQFSGPQSAERPALLLNRLFQAERVAVHPVALRRGR 142
            AALA+F   YTA  RLTV P       G R+  G  DE   K +  G+  S  S T      VVVEV+FSGPQ A+RPALLL  L + E V VHPV+LRRGR
Sbjct:    6 AALATFTDTYTATTRLTVRPASPRGPVGRRNKSGLIDETDSKTTTKGDSESNSSDTRS----VVVEVRFSGPQPADRPALLLRSLLKGESVVVHPVSLRRGR 103
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.970.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCJ7_ECTSI2.810e-1952.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPU4_9PHAE1.310e-1150.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:90974..96595 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.970.1mRNA_C-linearis_contig106.970.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig106 90423..96595 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig106.970.1 ID=prot_C-linearis_contig106.970.1|Name=mRNA_C-linearis_contig106.970.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=502bp
MSLPTSRRMDVTVCCRGCCVDPSKRKVRCWQFHLCGISNGDKKEAHAAAL
ASFRYAYTAAKRLTVSPTPGCRDGCRDEVKHKRSCTGNIPSPDSTTSQRY
CCVVVEVQFSGPQSAERPALLLNRLFQAERVAVHPVALRRGRKRSPEQAK
NKEVLGGRNEESRASGRIPKSSQQARNPAINVSNTSNNDNTNPNTMKNWT
RATKRSASGANLPSNLTDLSTKQQEDEGYLGGGGRGRGGAEISDSYRIHD
DDLDDDLDDEEDDFWNSFEEEGEDPTTIAAYTSALGRNLLCGAFTRCVDP
LTWVAEDEEIDAAVYDRGALLSGPRRRRRSHDRANNANADDNDSQSASPS
ASAATKTAAAELEIAAVGYWTDIDLDASVSGNEDVGDDDVYVLSPLTVAS
SPFLRIAPDTDVLKCTAVTALTGSLRVSPLTVRPPGSAPSRTRPARSFFL
EDSDRSRHKTDASLLHHGGDGGGGAPAALRASWNAGGVACVLEGNDTGGA
AG
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