prot_C-linearis_contig105.948.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig105.948.1
Unique Nameprot_C-linearis_contig105.948.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length283
Homology
BLAST of mRNA_C-linearis_contig105.948.1 vs. uniprot
Match: D7G0T4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T4_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 3.430e-80
Identity = 211/289 (73.01%), Postives = 217/289 (75.09%), Query Frame = 0
Query:    1 MRTVAFACVAAACAGGADAFVGSMRPVSSSVRRAG--SSVRMAADVTVPDLLKQTEKLKLLSTASKLGLLSKLEAAGLTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSFAAGAALVTVLPDDSVTSIALETFVAFPLLFVLPAVCGVAGFALTSLKNGSLVNLITSS---KPAPASEAFSS--PVVVKASKSSGPVAAKXXXXXXXXXXAXXXXRPXXXXXVKXXXXXXXKKXXXXXXXXPVKAAGNIANLPKAL 282
            M+TVAFAC  AACAGGADAFVGSMRP SSS+RRAG  SSVRMAADVTVPDLLKQTEKLKLL                 TLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAP XXXXXXXXXXXXXXXXXXXXXXXXXXX      GAALVTVLPDDSV+SIA+ETFVAFPLLFVLPAVCGVAGFALTSLKNGSLV+ ITS+   KPA AS   SS  PV VKASK S P AA           A  XX    XXX  XXXX   KK    XXXX  K AGNIANLPKAL
Sbjct:    1 MKTVAFACAVAACAGGADAFVGSMRPASSSMRRAGPSSSVRMAADVTVPDLLKQTEKLKLLXXXXXXXXXXXXXXXXXTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALVTVLPDDSVSSIAIETFVAFPLLFVLPAVCGVAGFALTSLKNGSLVDFITSTASPKPAAASPVASSXAPVAVKASKPSAPAAAPKSSGGRPAVGARSXXX---XXXXXXXXXAAPKKAAPKXXXXXXKPAGNIANLPKAL 286          
BLAST of mRNA_C-linearis_contig105.948.1 vs. uniprot
Match: A0A835Z532_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z532_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.030e-19
Identity = 88/195 (45.13%), Postives = 115/195 (58.97%), Query Frame = 0
Query:    1 MRTVAFACVAAACAGGADAFV--GSMRPVSSSVRRAGSSVRMAADVTVPDLLKQTEKLKLLSTASKLGLLSKLEAAGLTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSFAAGAALVTVLPDDSVTSIALETFVAFPLLFVLPAVCGVAGFALTSLKNGSLV 193
            ++ +A A   AACA  ADAF   GS+RP    V R G ++ ++   +V +LL +TE+LKLLSTAS            LTL+D+E  LP +D+ D I L K + PDLL +AP     XXXXXXXXXXXXXXXXX        S  AG A +  +PDDS+ +IAL+ F+A PLL + P    V    LT   +G+LV
Sbjct:    2 VKAIAAAAAIAACATSADAFAVPGSVRPA---VARRGMTMAVSKG-SVQELLIKTEELKLLSTASXXXXXXXXXXXXLTLRDLEAALPFLDDIDAIALGKELSPDLLAIAPKALEAXXXXXXXXXXXXXXXXXALLTGAALSVVAGLAAIAAIPDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTKANDGTLV 192          
BLAST of mRNA_C-linearis_contig105.948.1 vs. uniprot
Match: A0A6U1PC24_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PC24_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.170e-11
Identity = 59/186 (31.72%), Postives = 85/186 (45.70%), Query Frame = 0
Query:    9 VAAACAGGADAFVGSMRPVSSSVRRAGSSVRMAA------DVTVPDLLKQTEKLKLLSTASKLGLLSKLEAAGLTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSFAAGAALVTVLPDDSVTSIALETFVAFPLLFVLPAVCGVAGFALTSLK 188
            V AA A    AF     P  SS  +A SS R+A       +  + + L + E LKLL+  SKLGLLSK E  G++L  +E  L L DE+ ++   +        + P                              S AAGA  +  +PDDS+T++AL++F+A PL+ V+P    V    L+ LK
Sbjct:   11 VLAAVAPAVMAFQPMAAPALSSSTKAFSSPRVAPLQGTVEEEAIAETLIKAENLKLLTRVSKLGLLSKAEKFGISLSKLEPFLKLADESGVLLELEKSSAKTFPLLPKAVDQAPALLSLAESALALNPSVLLAGAAASAAAGAYAIYAIPDDSITNMALQSFIAIPLIAVIPGAAVVGSTVLSKLK 196          
BLAST of mRNA_C-linearis_contig105.948.1 vs. uniprot
Match: A0A7S4EDC9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDC9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.040e-10
Identity = 52/139 (37.41%), Postives = 70/139 (50.36%), Query Frame = 0
Query:   50 LKQTEKLKLLSTASKLGLLSKLEAAGLTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSFAAGAALVTVLPDDSVTSIALETFVAFPLLFVLPAVCGVAGFALTSLK 188
            L+  E+ +LL+  +K GLLSK E AG+ L D+E LL   +EN L+GL   +  DLL + P                            + SF  GA +VT LPDDSVT +AL+T +A PL  + P + G  G  L S K
Sbjct:   39 LEVVEETQLLTKLAKTGLLSKAERAGVKLADLEPLLLFAEENGLVGLLGDLNDDLLPLLPLLVRLAPLGLPVVSLALGLGPLNFLLA-IASFG-GAFVVTGLPDDSVTDVALQTLIAVPLATLFPVLFG--GLGLVSSK 173          
BLAST of mRNA_C-linearis_contig105.948.1 vs. uniprot
Match: A0A8J2X3T7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3T7_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.340e-10
Identity = 52/139 (37.41%), Postives = 70/139 (50.36%), Query Frame = 0
Query:   50 LKQTEKLKLLSTASKLGLLSKLEAAGLTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSFAAGAALVTVLPDDSVTSIALETFVAFPLLFVLPAVCGVAGFALTSLK 188
            L+  E+ +LL+  +K GLLSK E AG+ L D+E LL   +EN L+GL   +  DLL + P                            + SF  GA +VT LPDDSVT +AL+T +A PL  + P + G  G  L S K
Sbjct:   52 LEVVEETQLLTKLAKTGLLSKAERAGVKLADLEPLLLFAEENGLVGLLGDLNDDLLPLLPLLVRLAPLGLPVVSLALGLGPLNFLLA-IASFG-GAFVVTGLPDDSVTDVALQTLIAVPLATLFPVLFG--GLGLVSSK 186          
BLAST of mRNA_C-linearis_contig105.948.1 vs. uniprot
Match: A0A0G4F6S3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F6S3_VITBC)

HSP 1 Score: 68.6 bits (166), Expect = 3.130e-10
Identity = 62/173 (35.84%), Postives = 86/173 (49.71%), Query Frame = 0
Query:   19 AFVGSMRPVSSSVRRAGSSVRMAADVTVPDLLKQTEKLKLLSTASKLGLLSKLEAAGLTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSFAAGAALVTVLPDDSVTSIALETFVAFPLLFVLPAVCGVAGFALTSLKNGS 191
            A + S R V+S   R   +     DV VP +LK+TE+L+LLS  ++           LTL  +E LL +VDE   +   + V P ++   PA   XXXXXXX                 + SFA G   +  LPDDSVTS+AL+TF+  PL  +LP V  V  F    +++ S
Sbjct:   29 ALLHSRRSVASPATRRQVAADEYEDV-VPRVLKRTEELQLLSKLAEAXXXXXXXXXXLTLSQIEPLLKVVDEQYALYGLEEVAPKIVPALPALLEXXXXXXXVASAVLSTPWFVFVLLSIASFAGGVGQLLYLPDDSVTSVALQTFLFVPLAVILPGVALVTAFITARVQSKS 200          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.948.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G0T4_ECTSI3.430e-8073.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z532_9STRA1.030e-1945.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1PC24_9STRA3.170e-1131.72Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4EDC9_9STRA1.040e-1037.41Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2X3T7_9STRA1.340e-1037.41Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A0G4F6S3_VITBC3.130e-1035.84Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009500Protein of unknown function DUF1118PFAMPF06549DUF1118coord: 53..123
e-value: 4.3E-7
score: 30.3
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 133..152
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 185..282
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 164..184
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 107..126
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..106
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 153..163
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 127..132
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.536
NoneNo IPR availableTMHMMTMhelixcoord: 132..151
NoneNo IPR availableTMHMMTMhelixcoord: 164..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:203764..210047 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.948.1mRNA_C-linearis_contig105.948.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig105 203750..211156 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig105.948.1 ID=prot_C-linearis_contig105.948.1|Name=mRNA_C-linearis_contig105.948.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=283bp
MRTVAFACVAAACAGGADAFVGSMRPVSSSVRRAGSSVRMAADVTVPDLL
KQTEKLKLLSTASKLGLLSKLEAAGLTLKDVEKLLPLVDENDLIGLAKGV
GPDLLKVAPAALAAAPAALPLLAGALGVPGEALYLAGLGSFAAGAALVTV
LPDDSVTSIALETFVAFPLLFVLPAVCGVAGFALTSLKNGSLVNLITSSK
PAPASEAFSSPVVVKASKSSGPVAAKRSSGGRPAAAAAAAARPSAAPKVK
AAPKPAPKKAAPKPAPKPVKAAGNIANLPKAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009500DUF1118