mRNA_C-linearis_contig105.948.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig105.948.1 vs. uniprot
Match: D7G0T4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T4_ECTSI) HSP 1 Score: 254 bits (648), Expect = 5.670e-76 Identity = 212/289 (73.36%), Postives = 218/289 (75.43%), Query Frame = 3 Query: 15 MRTVAFACVAAACAGGADAFVGSMRPVSSSVRRAG--SSVRMAADVTVPDLLKQTEKLKLLSTASKLGLLSKLEAAGLTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSFAAGAALVTVLPDDSVTSIALETFVAFPLLFVLPAVCGVAGFALTSLKNGSLVNLITSS---KPAPASEAFSS--PVVVKASKSSGPVAAKXXXXXXXXXXAXXXXRPXXXXXXKXXXXXXXKKXXXXXXXXPVKAAGNIANLPKAL 860 M+TVAFAC AACAGGADAFVGSMRP SSS+RRAG SSVRMAADVTVPDLLKQTEKLKLL TLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAP XXXXXXXXXXXXXXXXXXXXXXXXXXX GAALVTVLPDDSV+SIA+ETFVAFPLLFVLPAVCGVAGFALTSLKNGSLV+ ITS+ KPA AS SS PV VKASK S P AA A XX XXXX XXXX KK XXXX K AGNIANLPKAL Sbjct: 1 MKTVAFACAVAACAGGADAFVGSMRPASSSMRRAGPSSSVRMAADVTVPDLLKQTEKLKLLXXXXXXXXXXXXXXXXXTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALVTVLPDDSVSSIAIETFVAFPLLFVLPAVCGVAGFALTSLKNGSLVDFITSTASPKPAAASPVASSXAPVAVKASKPSAPAAAPKSSGGRPAVGARSXXX---XXXXXXXXXAAPKKAAPKXXXXXXKPAGNIANLPKAL 286
BLAST of mRNA_C-linearis_contig105.948.1 vs. uniprot
Match: A0A835Z532_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z532_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 2.220e-18 Identity = 88/195 (45.13%), Postives = 115/195 (58.97%), Query Frame = 3 Query: 15 MRTVAFACVAAACAGGADAFV--GSMRPVSSSVRRAGSSVRMAADVTVPDLLKQTEKLKLLSTASKLGLLSKLEAAGLTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSFAAGAALVTVLPDDSVTSIALETFVAFPLLFVLPAVCGVAGFALTSLKNGSLV 593 ++ +A A AACA ADAF GS+RP V R G ++ ++ +V +LL +TE+LKLLSTAS LTL+D+E LP +D+ D I L K + PDLL +AP XXXXXXXXXXXXXXXXX S AG A + +PDDS+ +IAL+ F+A PLL + P V LT +G+LV Sbjct: 2 VKAIAAAAAIAACATSADAFAVPGSVRPA---VARRGMTMAVSKG-SVQELLIKTEELKLLSTASXXXXXXXXXXXXLTLRDLEAALPFLDDIDAIALGKELSPDLLAIAPKALEAXXXXXXXXXXXXXXXXXALLTGAALSVVAGLAAIAAIPDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTKANDGTLV 192
BLAST of mRNA_C-linearis_contig105.948.1 vs. uniprot
Match: A0A6U1PC24_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PC24_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.770e-10 Identity = 59/186 (31.72%), Postives = 85/186 (45.70%), Query Frame = 3 Query: 39 VAAACAGGADAFVGSMRPVSSSVRRAGSSVRMAA------DVTVPDLLKQTEKLKLLSTASKLGLLSKLEAAGLTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSFAAGAALVTVLPDDSVTSIALETFVAFPLLFVLPAVCGVAGFALTSLK 578 V AA A AF P SS +A SS R+A + + + L + E LKLL+ SKLGLLSK E G++L +E L L DE+ ++ + + P S AAGA + +PDDS+T++AL++F+A PL+ V+P V L+ LK Sbjct: 11 VLAAVAPAVMAFQPMAAPALSSSTKAFSSPRVAPLQGTVEEEAIAETLIKAENLKLLTRVSKLGLLSKAEKFGISLSKLEPFLKLADESGVLLELEKSSAKTFPLLPKAVDQAPALLSLAESALALNPSVLLAGAAASAAAGAYAIYAIPDDSITNMALQSFIAIPLIAVIPGAAVVGSTVLSKLK 196
BLAST of mRNA_C-linearis_contig105.948.1 vs. uniprot
Match: A0A7S4EDC9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDC9_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 5.190e-10 Identity = 52/139 (37.41%), Postives = 70/139 (50.36%), Query Frame = 3 Query: 162 LKQTEKLKLLSTASKLGLLSKLEAAGLTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSFAAGAALVTVLPDDSVTSIALETFVAFPLLFVLPAVCGVAGFALTSLK 578 L+ E+ +LL+ +K GLLSK E AG+ L D+E LL +EN L+GL + DLL + P + SF GA +VT LPDDSVT +AL+T +A PL + P + G G L S K Sbjct: 39 LEVVEETQLLTKLAKTGLLSKAERAGVKLADLEPLLLFAEENGLVGLLGDLNDDLLPLLPLLVRLAPLGLPVVSLALGLGPLNFLLA-IASFG-GAFVVTGLPDDSVTDVALQTLIAVPLATLFPVLFG--GLGLVSSK 173
BLAST of mRNA_C-linearis_contig105.948.1 vs. uniprot
Match: A0A8J2X3T7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3T7_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 6.810e-10 Identity = 52/139 (37.41%), Postives = 70/139 (50.36%), Query Frame = 3 Query: 162 LKQTEKLKLLSTASKLGLLSKLEAAGLTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSFAAGAALVTVLPDDSVTSIALETFVAFPLLFVLPAVCGVAGFALTSLK 578 L+ E+ +LL+ +K GLLSK E AG+ L D+E LL +EN L+GL + DLL + P + SF GA +VT LPDDSVT +AL+T +A PL + P + G G L S K Sbjct: 52 LEVVEETQLLTKLAKTGLLSKAERAGVKLADLEPLLLFAEENGLVGLLGDLNDDLLPLLPLLVRLAPLGLPVVSLALGLGPLNFLLA-IASFG-GAFVVTGLPDDSVTDVALQTLIAVPLATLFPVLFG--GLGLVSSK 186
BLAST of mRNA_C-linearis_contig105.948.1 vs. uniprot
Match: A0A0G4F6S3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F6S3_VITBC) HSP 1 Score: 68.6 bits (166), Expect = 1.590e-9 Identity = 62/173 (35.84%), Postives = 86/173 (49.71%), Query Frame = 3 Query: 69 AFVGSMRPVSSSVRRAGSSVRMAADVTVPDLLKQTEKLKLLSTASKLGLLSKLEAAGLTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSFAAGAALVTVLPDDSVTSIALETFVAFPLLFVLPAVCGVAGFALTSLKNGS 587 A + S R V+S R + DV VP +LK+TE+L+LLS ++ LTL +E LL +VDE + + V P ++ PA XXXXXXX + SFA G + LPDDSVTS+AL+TF+ PL +LP V V F +++ S Sbjct: 29 ALLHSRRSVASPATRRQVAADEYEDV-VPRVLKRTEELQLLSKLAEAXXXXXXXXXXLTLSQIEPLLKVVDEQYALYGLEEVAPKIVPALPALLEXXXXXXXVASAVLSTPWFVFVLLSIASFAGGVGQLLYLPDDSVTSVALQTFLFVPLAVILPGVALVTAFITARVQSKS 200 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.948.1 >prot_C-linearis_contig105.948.1 ID=prot_C-linearis_contig105.948.1|Name=mRNA_C-linearis_contig105.948.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=283bp MRTVAFACVAAACAGGADAFVGSMRPVSSSVRRAGSSVRMAADVTVPDLLback to top mRNA from alignment at C-linearis_contig105:203750..211156+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.948.1 ID=mRNA_C-linearis_contig105.948.1|Name=mRNA_C-linearis_contig105.948.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7407bp|location=Sequence derived from alignment at C-linearis_contig105:203750..211156+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:203750..211156+ >mRNA_C-linearis_contig105.948.1 ID=mRNA_C-linearis_contig105.948.1|Name=mRNA_C-linearis_contig105.948.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at C-linearis_contig105:203750..211156+ (Chordaria linearis ClinC8C monoicous)back to top |