mRNA_C-linearis_contig105.947.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: A0A6H5KW09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW09_9PHAE) HSP 1 Score: 266 bits (681), Expect = 3.570e-78 Identity = 140/258 (54.26%), Postives = 168/258 (65.12%), Query Frame = 1 Query: 1 VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGALAKGDD 774 VLDESHTIA AT V+ +V+NRRWCMTGTP +FSD NGQL F GA GAFR DLG+K PN +TQ E +AFLRRV+ RHSQGMKLG S+LGLP ITHKVEVL LP KE AY +FEK LQ +Y+ VRHRL +GSHTM VLTLL+KFR+ACSGGQLL+G A V G +G+GP S+DAFC +C+++ +SPV+T CGH+FCQ CI+ L K +D Sbjct: 836 VLDESHTIATAKHATNEVRDIVSNRRWCMTGTPYISRFSDANGQLSFVGAGGAFRGSDLGDKGPNRETQVETVAFLRRVLFRHSQGMKLGGKSILGLPSITHKVEVLALPTKERKAYVDFEKGLQNDYIMVRHRLRTQKGSHTMEVLTLLSKFRQACSGGQLLVGDSATV---GYDGEGPTPA------------------------------------SVDAFCPICNDIIESPVRTKCGHIFCQACISSVLTKKED 1054
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: D7G0T2_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T2_ECTSI) HSP 1 Score: 253 bits (647), Expect = 2.180e-74 Identity = 136/258 (52.71%), Postives = 164/258 (63.57%), Query Frame = 1 Query: 1 VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQ-VCIAGALAKGD 771 VLDESHTIA AT V+ +++NRRWCMTGTP +FSD NGQL F GA AFR DLG+K PN +TQ E +AFLRRV+LRHSQGMKLG S+LGLP ITHKVE L LP KE AY +FEK LQ +Y+ VRHRL +GSHTM VLTLL+KFR+ACSGGQLL+G A V GDG +G+ S+DAFC +C+++ +SPV+T CGH FCQ VC+ L + Sbjct: 775 VLDESHTIATAKHATNEVRDIISNRRWCMTGTPYISRFSDANGQLSFVGAGSAFRGSDLGDKGPNRETQVETVAFLRRVLLRHSQGMKLGGKSILGLPSITHKVEALALPTKERKAYVDFEKGLQNDYIKVRHRLRTQKGSHTMEVLTLLSKFRQACSGGQLLVGDSATV-----GGDG----------------------------------DGSTPASVDAFCPICNDIIESPVRTKCGHTFCQLVCVMVVLVSSE 993
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: D7G0S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S9_ECTSI) HSP 1 Score: 248 bits (633), Expect = 1.040e-71 Identity = 136/259 (52.51%), Postives = 165/259 (63.71%), Query Frame = 1 Query: 1 VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRD-RDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGALAKGDD 774 VLDESHTIA + TT VK LV+NRRWCMTGTP +FSD+NGQL F GA GAFR DLG+K P +TQ E +AFLRRV+LRHSQGMKLG +S+LGLP IT+KVEVL L KE AY +FE+ +Q +Y+ VRHRL +GSHTM VLTLL+KFR+ACSGGQL++G A G G PA +DAFCS+C+E+ ++PV+T CGH FCQ CI+ L K D Sbjct: 805 VLDESHTIASSNSTTTHVKTLVSNRRWCMTGTPYISRFSDVNGQLAFLGAEGAFRGGSDLGDKAPRRETQGETVAFLRRVLLRHSQGMKLGGHSILGLPTITNKVEVLTLSSKERKAYVDFEQGVQNDYIKVRHRLRTQKGSHTMEVLTLLSKFRQACSGGQLVVGASAA----GGGGSTPAT--------------------------------------LDAFCSMCNEILEAPVRTRCGHTFCQACISSVLTKSKD 1021
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: D7G0T8_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T8_ECTSI) HSP 1 Score: 185 bits (469), Expect = 6.790e-50 Identity = 93/126 (73.81%), Postives = 104/126 (82.54%), Query Frame = 1 Query: 1 VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQK 378 VLDESH++ GS ++ AV++LVANRRWCMTGTP KFSDLN QL F G AG+FRDRDLG+KRPN TQ EV AFLRRVVLRHSQGMKLGANSLLGLP ITHKVEVL P KEL+AY +FE +QK Sbjct: 750 VLDESHSLNHGSGSSNAVRELVANRRWCMTGTPFTSKFSDLNRQLSFVGVAGSFRDRDLGDKRPNTDTQVEVTAFLRRVVLRHSQGMKLGANSLLGLPTITHKVEVLTPPPKELEAYHDFENTIQK 875
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: A0A835YWG4_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG4_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.590e-34 Identity = 88/269 (32.71%), Postives = 129/269 (47.96%), Query Frame = 1 Query: 1 VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRDRDLGEKRPNLK-----------TQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGALAKGDD 774 VLDESHTI ++ + AV +++NRRW ++GTP N DL GQL ++ D+G R L + + L FLR +++RH+Q L +LGLP I + ++ E AY EK LQ +Y +VR+ L +++GSH+M VLTL++++R+ACSGG + I A + G G + MDA C +C+EL D+P T C HVFC +CI + K D Sbjct: 1038 VLDESHTIKTTNRLSAAVATIISNRRWLVSGTPANSNLGDLTGQL---------KNLDIGNLRSALAPLRYADSSNEISVRQALPFLRSIMMRHTQAQTLNGRHILGLPPINKEAVLVKWAPHERTAYVKLEKELQSQYKSVRYLLRSAKGSHSMKVLTLMSQYRQACSGGAI-INSAALAEAAAAGGQGATV--------------------------------------MDALCPICNELLDTPAITTCNHVFCHLCITAHVTKKAD 1258
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: A0A7S2JRT6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JRT6_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 9.950e-15 Identity = 76/273 (27.84%), Postives = 110/273 (40.29%), Query Frame = 1 Query: 1 VLDESHTIAKG-SQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAAGAFRDRDL--------GEKRPN-LKTQAEVLAFLRRVVLRHSQGMK--LGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVR----HRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGALAKGD 771 + DESH + ++ T AVK+LVA +WC+TGTP N SDL Q+ F G R D G+ P + L +R +++RHS L+ LP T + + L K+E AY EK+ + Y +R R+ N + +A+L + R AC+GG PV T + A+ D D A CS+C FD T CGH++C+ CI G + D Sbjct: 233 ICDESHCLRSSQTKQTQAVKRLVAENKWCVTGTPMNTNLSDLRSQMEFIGIENLNRMFDCFKGLGKTGGKNMPRCFRALERFLLVMRSMMIRHSMNQTNISSGRELMELPKKTERTIKITLTKEERKAYNTIEKSAMEFYRRLRMQEDERVFNRK---YLAILQKMIPMRLACAGG--------PVSQNATQ--------------------------KCADIDKGDKDRFHAKPDEHTECSICLNDFDDARATACGHIYCKECIEGVITAMD 468
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: A0A368RZF4_SETIT (Uncharacterized protein n=4 Tax=Setaria TaxID=4554 RepID=A0A368RZF4_SETIT) HSP 1 Score: 67.4 bits (163), Expect = 4.440e-9 Identity = 68/263 (25.86%), Postives = 114/263 (43.35%), Query Frame = 1 Query: 1 VLDESHTIAK-GSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFS-----GAAGAFRDRDLGE-KRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAP-VDIPGTNGDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGALAK 765 VLDE+ TI +Q + A L+A RRWC++GTP K DL F +F+D+ E + ++ ++ A LR ++LR ++ + +L LP T ++ + ++E Y E+ ++++ A + + + +L LL + R+AC LL GQ + VD + Q +E D ++ L E A CS+C + + V T CGHVFC C+ +L Sbjct: 556 VLDEAQTIKNYRTQVSRACCGLMAERRWCLSGTPIQNKIDDLYSYFCFLKYEPYSKLSSFKDKIKYEITKDPVRGYKKLQAILRIILLRRTKETLIDGEPILKLPPKTIQLSKIDFTQEERAFYLTLEEGSRQKFKA--YDAAGTINENYANILVLLLRLRQACDHPLLLKGQESDLVDTKSIE-----MAKQLPKETVTDLLEKL--------------------ERGPAICSICSDPPEDAVVTTCGHVFCYQCVHESLTS 791
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: A0A7S1DCX5_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCX5_CYCTE) HSP 1 Score: 63.9 bits (154), Expect = 3.460e-8 Identity = 53/192 (27.60%), Postives = 86/192 (44.79%), Query Frame = 1 Query: 1 VLDESHTIAKGSQA-TTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGA---------------------------AGAFRDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMK-LGANS-LLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQL 486 + DESHT+ G+ + AV LVA+ +WC+TGTP N +DL QL F G AF+++ E R L F+R V++RHS + +G ++ L+ LP + + + ++ Y E A ++ YL ++ + N G + + + L R ACSGG + Sbjct: 113 ICDESHTMRTGATTQSAAVMGLVADHKWCVTGTPINTAITDLTSQLRFVGIENLSEYSTVFRKTIKVHLDSKRETSRRGNAFKNKVFEESR----RCGPFLFFMRNVMIRHSMKQQYIGTSTTLMSLPPMRERHIDVEFSAEDATEYAPLEVAARQFYLQIKEKGANFVGRNYLKLSQCLLPLRIACSGGHV 300
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: F7VQG7_SORMK (WGS project CABT00000000 data, contig 2.4 n=1 Tax=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) TaxID=771870 RepID=F7VQG7_SORMK) HSP 1 Score: 60.8 bits (146), Expect = 7.020e-7 Identity = 46/170 (27.06%), Postives = 77/170 (45.29%), Query Frame = 1 Query: 1 VLDESHTIAKG-SQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGF------------SGAAGAFRDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMKLGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEYLAVRHRLLNSRGSHTMAVLTLLTKFRRAC 471 +LDE+ + + ++ AV+Q+ AN RWC+TGTP S+L+ L F A G+ R G K ++ A L+ ++LR + + +L LP +E + + E + Y N + Q Y R+ N+ G + +L LL + R+AC Sbjct: 696 ILDEAQCVKNAKTMSSKAVRQVQANHRWCLTGTPMMNSVSELSALLRFLQIKPFCEERKFKEAFGSLDHRHKGRDFEKSKAMKQLQALLKAIMLRRMKTTVIDGKPILNLPPKVEHIEHVEFSEGEKEFYTNLQDKSQVIY--GRYVRNNTVGKNYSNILVLLLRLRQAC 863
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Match: V4UE68_CITCL (Uncharacterized protein n=4 Tax=Citrus TaxID=2706 RepID=V4UE68_CITCL) HSP 1 Score: 55.8 bits (133), Expect = 3.130e-5 Identity = 70/274 (25.55%), Postives = 116/274 (42.34%), Query Frame = 1 Query: 1 VLDESHTIAKG-SQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAA--GAF--------RDRDLGEKRPNLKTQAEVLAFLRRVVLRHSQGMK-LGANSLLGLPGITHKVEVLPLPKKELDAYRNFEKALQKEY--LAVRHRLLNSRGSHTMAVLTLLTKFRRACSGGQLLIGQPAPVDIPGTN--------GDGPALGGQQEEEEKEDWMDGLDGSAEVAEEGDSDADEGAAAESMDAFCSVCHELFDSPVKTPCGHVFCQVCIAGA 756 VLDE+HTI SQ + A LVA+ RWC+TGTP D+ L F G + + + G++R LK V + L+ ++LR ++ +L LP +V L + E D Y K + ++ + R+L++ S +L LL + R+ C L++ + D N G AL G+ ++ ++ + + E+G+ C +C E F+ V TPC H C+ C+ G+ Sbjct: 559 VLDEAHTIKSSKSQVSIAAAALVADYRWCLTGTPIQNNLEDIYSLLRFLRVEPWGNWAWWNKLIQKPYEEGDER-GLKL---VQSILKPIMLRRTKSSTDREGRPILVLPPADIQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYAS----ILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGE---------------CPICLEAFEDAVLTPCAHRLCRECLLGS 809 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.947.1 >prot_C-linearis_contig105.947.1 ID=prot_C-linearis_contig105.947.1|Name=mRNA_C-linearis_contig105.947.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=258bp VLDESHTIAKGSQATTAVKQLVANRRWCMTGTPCNMKFSDLNGQLGFSGAback to top mRNA from alignment at C-linearis_contig105:185612..190148- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.947.1 ID=mRNA_C-linearis_contig105.947.1|Name=mRNA_C-linearis_contig105.947.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4537bp|location=Sequence derived from alignment at C-linearis_contig105:185612..190148- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:185612..190148- >mRNA_C-linearis_contig105.947.1 ID=mRNA_C-linearis_contig105.947.1|Name=mRNA_C-linearis_contig105.947.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1548bp|location=Sequence derived from alignment at C-linearis_contig105:185612..190148- (Chordaria linearis ClinC8C monoicous)back to top |