prot_C-linearis_contig104.909.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig104.909.1
Unique Name	prot_C-linearis_contig104.909.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	206

Homology

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BLAST of mRNA_C-linearis_contig104.909.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.360e-9
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0

Query:  176 GRQDEEGLLLAANCFDNTLRVFHRRFLNSQP 206
            GRQDEEGLLLAANCFDNTLRVFHRRFLNS+P
Sbjct:  358 GRQDEEGLLLAANCFDNTLRVFHRRFLNSRP 388

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig104.909.1 vs. uniprot

BLAST of mRNA_C-linearis_contig104.909.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1

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POSITION

0


Match Name	E-value	Identity	Description
A0A6H5KNQ7_9PHAE	1.360e-9	96.77	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

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POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 99..109
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 110..131
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..74
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 132..206
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 75..98
None	No IPR available	TMHMM	TMhelix		coord: 72..94
None	No IPR available	TMHMM	TMhelix		coord: 109..131

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig104	contig	C-linearis_contig104:453818..454435 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig104.909.1	mRNA_C-linearis_contig104.909.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig104 452761..454435 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig104.909.1 ID=prot_C-linearis_contig104.909.1|Name=mRNA_C-linearis_contig104.909.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=206bp
MLPCHAQRDLATLRCKQPRGTQSVVLCLMRGADGTLGTLPSCGSCSTLLK
AKSLEILGTLQNKQNQGSRCTLSPFLALALTLTLTHLTTFCLWCFLSSPL
PPLPSPFYAMLWYAMVCYAMLLPVVFPFGGVPGPVVRPRRSVLCFFLSLL
LHEHEPTTTTTTTTTTTKKASPPDAGRQDEEGLLLAANCFDNTLRVFHRR
FLNSQP