prot_C-linearis_contig104.875.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig104.875.1
Unique Name	prot_C-linearis_contig104.875.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	703

Homology

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BLAST of mRNA_C-linearis_contig104.875.1 vs. uniprot
Match: A0A6H5JH51_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH51_9PHAE)

HSP 1 Score: 881 bits (2277), Expect = 5.560e-315
Identity = 483/707 (68.32%), Postives = 552/707 (78.08%), Query Frame = 0

Query:    1 MSERRKVAVHQ--YDGYIDLGEKLWLAVCRPLGMPHLEDADLKLLDEAISILNPPEAHVRVVEVDTFMESESSIVKGGVPIGHGDYSLRQMTVIFKRASSTAPSGAEEAALTPQKD-ESKAKEEGGGDGPGPDVTEEAPVDEAEMTEAQTAAATRVAEREAMEAEEAGRRAYARLPEIILFWARSMRRGGNLVVCPNEQSMNRLIRAYLVCEVVQDSQLFDKSMTSFRERLTKERKGALMGVELGEASPAEQDALENLISEYSFHDASIGIVSLALSIYYFAVLGRNHVNVLTLLAVAVVAGLNQEATWPWVFKHILLCARMKDPIVRVTQCRQVRHHQGQLSGQGFLAIGLAVFGVYLEVWPADDGFTPLLFRILLNGFQAAMLAVLVINMVQAVEPMSLQPRSPKDRLYPWARTYLDDNVFDTEWHLTLMVGALWAGIIAVVV-TQLPYD-SNLDWSISITCFVVLGLSLASVNPGVALMSVWGILWLIPVGLAFVWRSAFDTALMLINKVTLTWRRMANEVVAHVRRRAFGKFSLRDTLILLLQVLPLAPLFLVSLPIPLLYIFVWFIHLSMRVFLRVADAMIFPVSSFRLHPILSDYGSVTWKMERLTMDVENRTMRALLLNRIEKLLGETG---GERFKAENLPFKPYWHLSKCPRTRLGCISFEKSTQXXXXXXXXXXXXXVSKTLLVSPVYVPKKHITGA 699
            MS+ +   V Q  Y+G+IDLGE LW  + RP+GMPHLE+ DLKLLDEAIS+LNPPEAHVRVVEVDTF ESE SIVKG   IGHGD+SLRQMT IFKRAS   PSG   A LT   D ESKA+E           ++ AP D   +T    AAA RV+ER+    EE   +   +LPEIILFW R+MRRGGNL+VCP E SM+RLI+AYLVCEVVQDS+LFDKS+TSFRER+T ERKG LMGVELGE S AEQDALENLIS+YSFHDASIGI+SL  SIYYF VL RNHVNVLTLLAVAVVAGLNQEATWPWVFKHILLCARMKDPIVRV+QCR VRHHQGQLSGQGFLAIGLA FGVYLEV+P  DG TPLLFRILLNGFQAAM+AVLV+NMVQAVEPM +   SPKDRL PWAR YLDDNVFDT+W+LTL+VG LW+G + V +   + ++   L ++I + C +VLGLS+A+VNPG+AL+  WG +WL+PVGLAFV RSAFDTALMLINKV+LTWRRMANEVV+H R  A G+FS+RD L  LLQVLPL PLFLVSLPIPLLY FVWFIHLSMRV LRVADA+  P   FRLHPILSDYGSVTWKM+RL+MDVENR+MR LL+ RI+KL+  T    GER ++  +P +PYWHLSK    RLGCI+ +  T               SKTLLVSP Y+P K +  A
Sbjct:    1 MSQHKHFTVEQIVYEGHIDLGENLWEKLGRPVGMPHLEERDLKLLDEAISLLNPPEAHVRVVEVDTFTESERSIVKGSARIGHGDFSLRQMTAIFKRAS---PSGLGIAELTATNDDESKAEE-----------SDVAPED---LTPEAAAAALRVSERDK---EEEAMKKPPKLPEIILFWGRNMRRGGNLIVCPGESSMDRLIQAYLVCEVVQDSKLFDKSVTSFRERVTTERKGGLMGVELGETSTAEQDALENLISDYSFHDASIGIISLVASIYYFFVLARNHVNVLTLLAVAVVAGLNQEATWPWVFKHILLCARMKDPIVRVSQCRLVRHHQGQLSGQGFLAIGLAAFGVYLEVFPTTDGDTPLLFRILLNGFQAAMVAVLVVNMVQAVEPMDMSRVSPKDRLRPWARKYLDDNVFDTKWYLTLLVGVLWSGGVTVTIFVGVSHEFEGLGYTIPVICLIVLGLSIAAVNPGMALLGAWGFIWLVPVGLAFVCRSAFDTALMLINKVSLTWRRMANEVVSHARDSARGEFSVRDILKFLLQVLPLTPLFLVSLPIPLLYFFVWFIHLSMRVLLRVADALSAPALDFRLHPILSDYGSVTWKMDRLSMDVENRSMRTLLMARIDKLMESTSATLGERSRSGVIPSRPYWHLSKTSANRLGCIAVKIGTGEEEN----------SKTLLVSPDYIPDKPLAHA 677

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig104.875.1 vs. uniprot

BLAST of mRNA_C-linearis_contig104.875.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5JH51_9PHAE	5.560e-315	68.32	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 339..356
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 444..449
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 575..702
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 552..556
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 450..468
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 557..574
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 424..443
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 474..494
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 495..530
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 531..551
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..338
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 368..390
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 357..367
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 391..423
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 469..473
None	No IPR available	TMHMM	TMhelix		coord: 368..390
None	No IPR available	TMHMM	TMhelix		coord: 424..446
None	No IPR available	TMHMM	TMhelix		coord: 259..281
None	No IPR available	TMHMM	TMhelix		coord: 479..498
None	No IPR available	TMHMM	TMhelix		coord: 453..475
None	No IPR available	TMHMM	TMhelix		coord: 543..565
None	No IPR available	TMHMM	TMhelix		coord: 339..361
None	No IPR available	TMHMM	TMhelix		coord: 288..310

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig104	contig	C-linearis_contig104:131178..135789 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig104.875.1	mRNA_C-linearis_contig104.875.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig104 131097..137308 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig104.875.1 ID=prot_C-linearis_contig104.875.1|Name=mRNA_C-linearis_contig104.875.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=703bp
MSERRKVAVHQYDGYIDLGEKLWLAVCRPLGMPHLEDADLKLLDEAISIL
NPPEAHVRVVEVDTFMESESSIVKGGVPIGHGDYSLRQMTVIFKRASSTA
PSGAEEAALTPQKDESKAKEEGGGDGPGPDVTEEAPVDEAEMTEAQTAAA
TRVAEREAMEAEEAGRRAYARLPEIILFWARSMRRGGNLVVCPNEQSMNR
LIRAYLVCEVVQDSQLFDKSMTSFRERLTKERKGALMGVELGEASPAEQD
ALENLISEYSFHDASIGIVSLALSIYYFAVLGRNHVNVLTLLAVAVVAGL
NQEATWPWVFKHILLCARMKDPIVRVTQCRQVRHHQGQLSGQGFLAIGLA
VFGVYLEVWPADDGFTPLLFRILLNGFQAAMLAVLVINMVQAVEPMSLQP
RSPKDRLYPWARTYLDDNVFDTEWHLTLMVGALWAGIIAVVVTQLPYDSN
LDWSISITCFVVLGLSLASVNPGVALMSVWGILWLIPVGLAFVWRSAFDT
ALMLINKVTLTWRRMANEVVAHVRRRAFGKFSLRDTLILLLQVLPLAPLF
LVSLPIPLLYIFVWFIHLSMRVFLRVADAMIFPVSSFRLHPILSDYGSVT
WKMERLTMDVENRTMRALLLNRIEKLLGETGGERFKAENLPFKPYWHLSK
CPRTRLGCISFEKSTQKSTEEGKEKEKEKVSKTLLVSPVYVPKKHITGAA
NV*