prot_C-linearis_contig10.649.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.649.1
Unique Nameprot_C-linearis_contig10.649.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length123
Homology
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BLAST of mRNA_C-linearis_contig10.649.1 vs. uniprot
Match: D7FNC9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNC9_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 4.300e-15
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0 
Query:    1 MGQKIMRRRPRRESSPLLPKVMAVAKPILQWCIMPAVLLLGMREAARFPTRAEV 54
            MG+KIMRRRPRR+S+PLLPKV+AVAKPI++W IMPAVLL+GMR     PT  EV
Sbjct:    1 MGEKIMRRRPRRKSAPLLPKVLAVAKPIMRWGIMPAVLLMGMRSEPN-PTLLEV 53
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.649.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNC9_ECTSI4.300e-1572.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 46..122
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 29..40
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..45
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 41..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3281677..3285619 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.649.1mRNA_C-linearis_contig10.649.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 3281609..3286148 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.649.1 ID=prot_C-linearis_contig10.649.1|Name=mRNA_C-linearis_contig10.649.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=123bp
MGQKIMRRRPRRESSPLLPKVMAVAKPILQWCIMPAVLLLGMREAARFPT
RAEVRGLSSPRQGGGRAGESKQVGWMVLREPGTLGPPGLRCCIVTLMQQL
GSVHRHTCPSFLFLSIVVATGI*
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