prot_C-linearis_contig10.586.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.586.1
Unique Nameprot_C-linearis_contig10.586.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length183
Homology
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BLAST of mRNA_C-linearis_contig10.586.1 vs. uniprot
Match: D7G8P4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P4_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 2.250e-46
Identity = 111/186 (59.68%), Postives = 129/186 (69.35%), Query Frame = 0 
Query:    1 MGRSDKKAKAPLRRAVSESAAPSRGQRKRALKTASLIISKIGLT-KRARESPKD-DELPISLVWAKGDTAATQPRPRVKGSAFQRVVSNKGKKKLMSAEMGQVTAVLNATEFQEDPFAAIQAHLRQTARPSPPTAVDDDKVRRPG---VSAKKDRVGQHSTKRGGREDKKPPAKPYKGRNAKMRTK 181
            MG+ D KAK   RR VSESA PSRGQRKRALK ASLI  KIGLT K  R+   D DE  +  V        ++P    KGSAFQRV SNKGK+ LM++EMGQ+ AVL+A  FQ+DPFAAIQAHLRQTA P+PP A  D K R+PG   VSAK   VGQH+ +  G  D+KP AKPYK RNAKMR++
Sbjct:   19 MGKIDTKAK--HRRPVSESAVPSRGQRKRALKKASLI-KKIGLTSKHVRQRRTDEDEKQVPSVATDEKGIPSRPSLAAKGSAFQRVSSNKGKRSLMTSEMGQINAVLSAPSFQQDPFAAIQAHLRQTALPTPPMA--DCKARKPGKGKVSAKS--VGQHAGETRG--DRKPKAKPYKARNAKMRSR 195
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.586.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8P4_ECTSI2.250e-4659.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028160Ribosome biogenesis protein Slx9-likePFAMPF15341SLX9coord: 73..125
e-value: 3.8E-9
score: 37.0
NoneNo IPR availablePANTHERPTHR31109FAMILY NOT NAMEDcoord: 77..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2704244..2705210 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.586.1mRNA_C-linearis_contig10.586.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 2703182..2705426 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.586.1 ID=prot_C-linearis_contig10.586.1|Name=mRNA_C-linearis_contig10.586.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=183bp
MGRSDKKAKAPLRRAVSESAAPSRGQRKRALKTASLIISKIGLTKRARES
PKDDELPISLVWAKGDTAATQPRPRVKGSAFQRVVSNKGKKKLMSAEMGQ
VTAVLNATEFQEDPFAAIQAHLRQTARPSPPTAVDDDKVRRPGVSAKKDR
VGQHSTKRGGREDKKPPAKPYKGRNAKMRTKF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028160Slx9-like