mRNA_C-linearis_contig10.586.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig10.586.1
Unique Name	mRNA_C-linearis_contig10.586.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig10.586.1 vs. uniprot
Match: D7G8P4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P4_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 5.700e-43
Identity = 111/186 (59.68%), Postives = 129/186 (69.35%), Query Frame = 1

Query: 1063 MGRSDKKAKAPLRRAVSESAAPSRGQRKRALKTASLIISKIGLT-KRARESPKD-DELPISLVWAKGDTAATQPRPRVKGSAFQRVVSNKGKKKLMSAEMGQVTAVLNATEFQEDPFAAIQAHLRQTARPSPPTAVDDDKVRRPG---VSAKKDRVGQHSTKRGGREDKKPPAKPYKGRNAKMRTK 1605
            MG+ D KAK   RR VSESA PSRGQRKRALK ASLI  KIGLT K  R+   D DE  +  V        ++P    KGSAFQRV SNKGK+ LM++EMGQ+ AVL+A  FQ+DPFAAIQAHLRQTA P+PP A  D K R+PG   VSAK   VGQH+ +  G  D+KP AKPYK RNAKMR++
Sbjct:   19 MGKIDTKAKH--RRPVSESAVPSRGQRKRALKKASLI-KKIGLTSKHVRQRRTDEDEKQVPSVATDEKGIPSRPSLAAKGSAFQRVSSNKGKRSLMTSEMGQINAVLSAPSFQQDPFAAIQAHLRQTALPTPPMA--DCKARKPGKGKVSAKS--VGQHAGETRG--DRKPKAKPYKARNAKMRSR 195

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig10.586.1 vs. uniprot

BLAST of mRNA_C-linearis_contig10.586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G8P4_ECTSI	5.700e-43	59.68	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig10	contig	C-linearis_contig10:2703182..2705426 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	1827
Cds size	549
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig10.586.1	prot_C-linearis_contig10.586.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig10 2704244..2705210 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927343.622223-UTR-C-linearis_contig10:2703181..2704243	1622927343.622223-UTR-C-linearis_contig10:2703181..2704243	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig10 2703182..2704243 +
1690879640.038223-UTR-C-linearis_contig10:2703181..2704243	1690879640.038223-UTR-C-linearis_contig10:2703181..2704243	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig10 2703182..2704243 +
1622927343.6491592-UTR-C-linearis_contig10:2705210..2705426	1622927343.6491592-UTR-C-linearis_contig10:2705210..2705426	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig10 2705211..2705426 +
1690879640.073681-UTR-C-linearis_contig10:2705210..2705426	1690879640.073681-UTR-C-linearis_contig10:2705210..2705426	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig10 2705211..2705426 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927343.6318846-CDS-C-linearis_contig10:2704243..2704399	1622927343.6318846-CDS-C-linearis_contig10:2704243..2704399	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig10 2704244..2704399 +
1690879640.0466862-CDS-C-linearis_contig10:2704243..2704399	1690879640.0466862-CDS-C-linearis_contig10:2704243..2704399	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig10 2704244..2704399 +
1622927343.6406827-CDS-C-linearis_contig10:2704817..2705210	1622927343.6406827-CDS-C-linearis_contig10:2704817..2705210	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig10 2704818..2705210 +
1690879640.0597801-CDS-C-linearis_contig10:2704817..2705210	1690879640.0597801-CDS-C-linearis_contig10:2704817..2705210	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig10 2704818..2705210 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig10:2703182..2705426+
coding sequence from alignment at C-linearis_contig10:2703182..2705426+

protein sequence of mRNA_C-linearis_contig10.586.1

>prot_C-linearis_contig10.586.1 ID=prot_C-linearis_contig10.586.1|Name=mRNA_C-linearis_contig10.586.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=183bp
MGRSDKKAKAPLRRAVSESAAPSRGQRKRALKTASLIISKIGLTKRARES
PKDDELPISLVWAKGDTAATQPRPRVKGSAFQRVVSNKGKKKLMSAEMGQ
VTAVLNATEFQEDPFAAIQAHLRQTARPSPPTAVDDDKVRRPGVSAKKDR
VGQHSTKRGGREDKKPPAKPYKGRNAKMRTKF*

mRNA from alignment at C-linearis_contig10:2703182..2705426+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig10.586.1 ID=mRNA_C-linearis_contig10.586.1|Name=mRNA_C-linearis_contig10.586.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2245bp|location=Sequence derived from alignment at C-linearis_contig10:2703182..2705426+ (Chordaria linearis ClinC8C monoicous)
TCTCTTCATAGCAGTGTATCGAGCCTGGTTGGGTTGCCTTTAAGGAGCGG
TCCTCGAAAAGGTTGGTTGCCTGACCTGGCTGCGAAATACGTAGAATGCG
GATATCAGATTGTGTGGGACCACTGATTCTCCACCCCATGCTTGCATGTG
ATGATCTCTCTGACAAACTACGTATCGTATTGGCTTCGTCCACATCGATT
AGTCTAGGGCAGTGCCGACAGTGTAATCTCAGAAACCGAGCAAGGGTAAT
TGTGTTTGCTGTTCACCACACGCACCAGGCACCAGGCGAAGCAGACGAGC
GCACGATGCGGCCGCACAAAATGGCTCCTGCTGTAGACTGTAGACAACTA
GACCCGCAGTTCAGGACATTGGGGTCTGTGGGGGTGCATACGCAGGAAGG
AAAAAAAATGGTTTGATCCAGTTTGCCTTGGCGAATCGCTTCTGAAACCT
CGGCACAGCCCCACCCCCGGAGCCGAGCATGTTGCTAGCACCGCGCGCCC
GACTGCCACAAGAGAGCGTCGTCTACTGATATGTATCTCCGTTCATGCCG
GGACTCTCCGCAATATGGAAGATGCTGTCGAGCATTCGCCATGTTTGCTG
TTTTGCCTTGACCTCACGAGTAGAGGGTGTGGAAAGTTTGTTTGTGTTTT
TTAGGTGTGTACCAAGCTCGTGTGTACTGCTGCCGCACTGCTGCTGTGAA
GCTTGCTCGGAGAAGCCCCAAACTGCTGCTCTGTGGTACGGCGGTATAGA
CTATACTTCGAAGCAGGATCGGGGTTGCAGCAACCCAATGTGCTACCGAC
TGGTTTCTGCGTCTTGTATTAACTCCTTGGGTGCTCTTTCGGTCTACCTG
TGACACATGAGTTTCAATCACAACCCAAACACAAACCAGAGTAGTGAAGT
CCGACAAGCAAAAGTGGCGAGGTGGTTTTGTTGATACTGCTGTATTGGAT
GATCTAGCCTAGACGACATGACACGAACTTGCAAGGCGGATCGTGTTTCC
CTCCAAGTACGTCCGGGTCGATTTTCCATCGGCCACCTTAATCTTGATGA
ACAGGGAGACTAATGGGTAGAAGCGACAAGAAGGCGAAGGCTCCATTACG
GAGAGCAGTATCAGAGTCTGCAGCCCCGAGTCGCGGACAGCGGAAGCGCG
CCCTGAAGACGGCGTCTCTCATAATAAGCAAGATCGGGCTCACAAAGCGT
GCCCGAGAAAGTCCCAAGGTTTGTTGGTGCTTTTTCGTCTTATGGATAGT
CTACAATATAGACTCGTAGAGTTATGTGTGATGCGCGCGGTGTCACTTGA
TGTGGGTCCACTCTGGTTTTGTTCGCGCTACTTTTGTCTTCGACTCTCAA
CGACAAAGATGTGCTCCTGAGTGAACGTTTGCCATAACGGGTGTGGCAGC
GATTCGGCGATTTTGATAGAGGAGTTGGATCTACCCTGTTTTGTTACAAT
GGCGTGTCCTTGTCTTGGTAGCAAGAACACTTCTATCTGCTGTGTGCCTT
TTGAACGGAGTTTTTGACTGATTTCACTATGGTATGTTCACGTCTCTACA
GCGTGAACCCTCAAGAGTTATCGGCACGATCTACACCATTCAGCGCCACT
GTCCCTTCGTCATCGATACATTTCGATTCTGATCAGGATGACGAACTGCC
CATTTCGCTAGTTTGGGCCAAAGGAGACACAGCTGCAACACAACCGCGCC
CCAGGGTAAAAGGGTCTGCGTTCCAACGGGTGGTCAGCAACAAGGGGAAG
AAGAAGCTCATGTCTGCCGAAATGGGGCAGGTGACAGCCGTCCTGAACGC
GACTGAATTTCAGGAAGACCCTTTCGCTGCGATACAAGCTCATCTTCGAC
AAACAGCTCGCCCTTCCCCTCCTACTGCTGTCGACGACGACAAGGTGCGA
AGGCCTGGCGTTTCTGCGAAAAAAGATCGGGTTGGGCAGCATTCTACGAA
GAGGGGAGGCCGGGAAGACAAGAAACCACCTGCTAAGCCTTACAAAGGAA
GGAATGCCAAGATGAGGACAAAATTTTGATGGGACGTGTAGGAAGCAAGA
GGAGGCAGACGGCGTGCAGGGATCTTGATAGTCGCCTCATGTGAGGGGGA
AAATATCTCGTCTTGACGAGTTCGAACTAAAAAATGCAGAGCAACACAGT
TGTTGCGTGCTTTCAGAAAACTGCTCGCATGGCAGCTGTTTGCAGAATTC
TTGCTCTTTCCACACGACACGAAGATTCGTCTTTCATGAAGCGAG

Coding sequence (CDS) from alignment at C-linearis_contig10:2703182..2705426+

>mRNA_C-linearis_contig10.586.1 ID=mRNA_C-linearis_contig10.586.1|Name=mRNA_C-linearis_contig10.586.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at C-linearis_contig10:2703182..2705426+ (Chordaria linearis ClinC8C monoicous)
ATGGGTAGAAGCGACAAGAAGGCGAAGGCTCCATTACGGAGAGCAGTATC
AGAGTCTGCAGCCCCGAGTCGCGGACAGCGGAAGCGCGCCCTGAAGACGG
CGTCTCTCATAATAAGCAAGATCGGGCTCACAAAGCGTGCCCGAGAAAGT
CCCAAGATGGGTAGAAGCGACAAGAAGGCGAAGGCTCCATTACGGAGAGC
AGTATCAGAGTCTGCAGCCCCGAGTCGCGGACAGCGGAAGCGCGCCCTGA
AGACGGCGTCTCTCATAATAAGCAAGATCGGGCTCACAAAGCGTGCCCGA
GAAAGTCCCAAGGATGACGAACTGCCCATTTCGCTAGTTTGGGCCAAAGG
AGACACAGCTGCAACACAACCGCGCCCCAGGGTAAAAGGGTCTGCGTTCC
AACGGGTGGTCAGCAACAAGGGGAAGAAGAAGCTCATGTCTGCCGAAATG
GGGCAGGTGACAGCCGTCCTGAACGCGACTGAATTTCAGGAAGACCCTTT
CGCTGCGATACAAGCTCATCTTCGACAAACAGCTCGCCCTTCCCCTCCTA
CTGCTGTCGACGACGACAAGGTGCGAAGGCCTGGCGTTTCTGCGAAAAAA
GATCGGGTTGGGCAGCATTCTACGAAGAGGGGAGGCCGGGAAGACAAGAA
ACCACCTGCTAAGCCTTACAAAGGAAGGAATGCCAAGATGAGGACAAAAT
TTTGAGATGACGAACTGCCCATTTCGCTAGTTTGGGCCAAAGGAGACACA
GCTGCAACACAACCGCGCCCCAGGGTAAAAGGGTCTGCGTTCCAACGGGT
GGTCAGCAACAAGGGGAAGAAGAAGCTCATGTCTGCCGAAATGGGGCAGG
TGACAGCCGTCCTGAACGCGACTGAATTTCAGGAAGACCCTTTCGCTGCG
ATACAAGCTCATCTTCGACAAACAGCTCGCCCTTCCCCTCCTACTGCTGT
CGACGACGACAAGGTGCGAAGGCCTGGCGTTTCTGCGAAAAAAGATCGGG
TTGGGCAGCATTCTACGAAGAGGGGAGGCCGGGAAGACAAGAAACCACCT
GCTAAGCCTTACAAAGGAAGGAATGCCAAGATGAGGACAAAATTTTGA