prot_C-linearis_contig10.543.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.543.1
Unique Nameprot_C-linearis_contig10.543.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length274
Homology
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BLAST of mRNA_C-linearis_contig10.543.1 vs. uniprot
Match: A0A6H5JQM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM1_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 3.900e-40
Identity = 194/280 (69.29%), Postives = 221/280 (78.93%), Query Frame = 0 
Query:    1 MARVGSQSKDREALLALYWSSGGPRWKRNQGWADNDDDLSSWHGVTLDEQGRVSRLDLNRNQLDGTIPAALGYLGSLMYLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKLTDLDLAENRIGEGRLQGKDLNAWKDKARQQLAAAQSGK---RRGGSG--------------TRDSSGTGGGAVDVREYLENIMAKDREIAELKGENKQLKRRSESGS 263
            M R GS+ +DREALLALYWSSGGPRW RNQGWA ND DL +WHGV   + GRV RLDL+RN L GTIPAALG L  ++Y  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP+LTDLDL ENR+  GRL+GK L  WK+ ARQ+L  +QSG    + G +G               RD++     + +V+EYL+N+MAKDREIAEL+ EN++L+R S + S
Sbjct:    1 MDRAGSEQQDREALLALYWSSGGPRWSRNQGWASNDADLGNWHGVMC-KDGRVVRLDLDRNGLVGTIPAALGGLTKVVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQLTDLDLTENRVEAGRLKGKGLMEWKEAARQRLIDSQSGTVSWQHGAAGPSPRATXXXXXXXXARDAAAHRP-SFNVQEYLDNMMAKDREIAELRAENERLRRGSRNTS 278
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BLAST of mRNA_C-linearis_contig10.543.1 vs. uniprot
Match: D7FQH2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQH2_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 6.300e-29
Identity = 57/79 (72.15%), Postives = 64/79 (81.01%), Query Frame = 0 
Query:    1 MARVGSQSKDREALLALYWSSGGPRWKRNQGWADNDDDLSSWHGVTLDEQGRVSRLDLNRNQLDGTIPAALGYLGSLMY 79
            M R GS+ +DREALLALYWSSGGPRW RNQGWA ND D+ SWHGVT  + GRV RLDLNRN L GTIPAALG L +++Y
Sbjct:    1 MDRAGSEQQDREALLALYWSSGGPRWTRNQGWASNDADMGSWHGVTC-KNGRVVRLDLNRNGLVGTIPAALGGLANVVY 78
[Close]
BLAST of mRNA_C-linearis_contig10.543.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.420e-14
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 0 
Query:   10 DREALLALYWSSGGPRWKRNQGWADNDDDLSSWHGVTLDEQGRVSRLDLNRNQLDGTIPAALGYLGSL 77
            DR+AL+ALY ++GG  W+ +Q W D D DL +WHGV +++QGRV +L L  N L+G IPA LG L +L
Sbjct:    5 DRDALVALYRATGGENWRESQNW-DTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGQLANL 71
[Close]
BLAST of mRNA_C-linearis_contig10.543.1 vs. uniprot
Match: A0A2A2G600_9BACT (Two component regulator three Y domain protein (Fragment) n=1 Tax=Aliifodinibius sp. WN023 TaxID=2032627 RepID=A0A2A2G600_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 4.170e-14
Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 0 
Query:    5 GSQSKDREALLALYWSSGGPRWKRNQGWADNDDDLSSWHGVTLDEQGRVSRLDLNRNQLDGTIPAALGYLGSLMYL 80
            GS S DR+AL+ LY ++GG  W  N GW   D    SWHGV +D  GRV RLDL +N L G +P+ +G L  L YL
Sbjct:   26 GSVSGDRQALMDLYSATGGDSWANNSGWGSGDPS-GSWHGVEVDANGRVVRLDLWKNGLQGQLPSTIGNLTKLTYL 100
[Close]
BLAST of mRNA_C-linearis_contig10.543.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.790e-13
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = 0 
Query:    8 SKDREALLALYWSSGGPRWKRNQGWADNDDDLSSWHGVTLDEQGRVSRLDLNRNQLDGTIPAALGYLGSLMYL 80
            S+DR AL+AL+WS+GG RW  N  WA  D +LS WHGV +++ GRV  LDLN N L GT+P  L  L  LM L
Sbjct:   74 SEDRAALVALFWSTGGTRWIFNANWA-TDANLSKWHGVEVNDHGRVVELDLNNNNLRGTVPETLRGLKELMVL 145
[Close]
BLAST of mRNA_C-linearis_contig10.543.1 vs. uniprot
Match: A0A6B0WES6_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6B0WES6_9CHLR)

HSP 1 Score: 80.5 bits (197), Expect = 2.360e-13
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 0 
Query:    5 GSQSKDREALLALYWSSGGPRWKRNQGWADNDDDLSSWHGVTLDEQGRVSRLDLNRNQLDGTIPAALGYLGSLMYLR 81
            G    DREAL+ALY ++GGP W+ +  W  +D+ L  W+GVT D  GRV RL+L+ N L G +PA LG L  L +LR
Sbjct:  360 GDAGTDREALVALYHATGGPNWRNDANWL-SDEPLRRWYGVTTDSGGRVVRLELSSNDLSGELPAELGQLSELQWLR 435
[Close]
BLAST of mRNA_C-linearis_contig10.543.1 vs. uniprot
Match: A0A6L7WC15_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7WC15_9CHLR)

HSP 1 Score: 80.5 bits (197), Expect = 2.510e-13
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 0 
Query:    5 GSQSKDREALLALYWSSGGPRWKRNQGWADNDDDLSSWHGVTLDEQGRVSRLDLNRNQLDGTIPAALGYLGSLMYLR 81
            G    DREAL+ALY ++GGP W+ +  W  +D+ L  W+GVT D  GRV RL+L+ N L G +PA LG L  L +LR
Sbjct:  360 GDAGTDREALVALYHATGGPNWRNDANWL-SDEPLRRWYGVTTDSGGRVVRLELSSNDLSGELPAELGQLSELQWLR 435
[Close]
BLAST of mRNA_C-linearis_contig10.543.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 3.230e-13
Identity = 42/79 (53.16%), Postives = 50/79 (63.29%), Query Frame = 0 
Query:    2 ARVGSQSKDREALLALYWSSGGPRWKRNQGWADNDDDLSSWHGVTLDEQGRVSRLDLNRNQLDGTIPAALGYLGSLMYL 80
            A+    S+DR AL+AL+ S+GG RW  N  WA  D DLS WHGV +++ GRV  LDLN N L GTIP  L  L  LM L
Sbjct:   30 AKFAMSSEDRAALVALFRSTGGTRWILNANWA-TDADLSKWHGVEVNQHGRVVELDLNNNNLRGTIPETLRGLKELMVL 107
[Close]
BLAST of mRNA_C-linearis_contig10.543.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 4.060e-13
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 0 
Query:    8 SKDREALLALYWSSGGPRWKRNQGWADNDDDLSSWHGVTLDEQGRVSRLDLNRNQLDGTIPAALGYLGSLMYLR 81
            S+DR AL+AL+ S+GG RW RN+ W D   DLS W+GV +   GRV  L L+ N L+GTIP ALG L  L YLR
Sbjct:    3 SEDRAALVALFRSAGGTRWHRNKNW-DTGADLSQWYGVHVKHDGRVVELWLSSNNLEGTIPEALGVLTELKYLR 75
[Close]
BLAST of mRNA_C-linearis_contig10.543.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 4.110e-13
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 0 
Query:   10 DREALLALYWSSGGPRWKRNQGWADNDDDLSSWHGVTLDEQGRVSRLDLNRNQLDGTIPAALGYLGSLMYL 80
            DR+AL+ LY ++GG  W+  Q W D D DL +WHGV +++QGRV +L L  N L+G IPA LG LG+L  L
Sbjct:    5 DRDALVVLYRATGGENWRERQNW-DTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGNLQQL 74
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.543.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQM1_9PHAE3.900e-4069.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQH2_ECTSI6.300e-2972.15Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JK91_9PHAE3.420e-1452.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2A2G600_9BACT4.170e-1450.00Two component regulator three Y domain protein (Fr... [more]
A0A6H5KZF6_9PHAE1.790e-1354.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6B0WES6_9CHLR2.360e-1349.35Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A6L7WC15_9CHLR2.510e-1349.35Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
D7FH89_ECTSI3.230e-1353.16Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FHA3_ECTSI4.060e-1355.41Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LBY3_ECTSI4.110e-1352.11Hypothetical leucine rich repeat protein n=1 Tax=E... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 231..258
NoneNo IPR availablePANTHERPTHR27008:SF281coord: 29..126
coord: 56..187
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 29..126
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 56..187
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 29..185
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 9..121
e-value: 3.4E-28
score: 99.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 122..196
e-value: 1.0E-12
score: 49.9
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 53..111
e-value: 2.4E-8
score: 33.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2105936..2132780 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.543.1mRNA_C-linearis_contig10.543.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 2103569..2133821 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.543.1 ID=prot_C-linearis_contig10.543.1|Name=mRNA_C-linearis_contig10.543.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=274bp
MARVGSQSKDREALLALYWSSGGPRWKRNQGWADNDDDLSSWHGVTLDEQ
GRVSRLDLNRNQLDGTIPAALGYLGSLMYLRMSFNSLTGPIPCTFGNLSR
LNYLDIRSNQLTGNLPADLGRLTEVSKVDFSCNLIGGHIPPEIGNMAGLL
LCWLEKNHIQGPIPAELANIPKLTDLDLAENRIGEGRLQGKDLNAWKDKA
RQQLAAAQSGKRRGGSGTRDSSGTGGGAVDVREYLENIMAKDREIAELKG
ENKQLKRRSESGSSGGERGVPNG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt