prot_C-linearis_contig10.538.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.538.1
Unique Nameprot_C-linearis_contig10.538.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length448
Homology
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BLAST of mRNA_C-linearis_contig10.538.1 vs. uniprot
Match: A0A6H5LB40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB40_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 8.430e-20
Identity = 68/159 (42.77%), Postives = 92/159 (57.86%), Query Frame = 0 
Query:   82 TTKALTLAALSGFIQSGGASTFQQVSLTLSDACRALAPWSL---RVGAAGDGTGQPRLPPQLADHLWPGSSQSARQRPAVTSFAGGSGRXXXXXXXXXXXXGSSRLKSRRFITRIEINGNNXXXXXXXXXXXXMMSVSWPASMKRLEFGARFNSPVEGV 237
            TTKALT  ALSGF+  GGA+  Q++SL LS+ACRALA WSL   RV A  +      +P +LA+H+WPGSS  A ++        G G+            G+ RL+ RR ITR+++  +             + + SWP++M+ LEFG RFNSPVEGV
Sbjct:  265 TTKALTCVALSGFVPGGGAAVVQELSLDLSNACRALASWSLTVARVMAEEEEHSGELMPARLANHIWPGSSALALRKRGER----GGGKDGGQVGCGTQAAGA-RLEPRRRITRVKVESD-----------IAVTAASWPSTMRCLEFGDRFNSPVEGV 407
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BLAST of mRNA_C-linearis_contig10.538.1 vs. uniprot
Match: D7FZV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV7_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 9.520e-8
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 0 
Query:  136 LPPQLADHLWPGSSQSA-RQRPAVTSFAGGSGRXXXXXXXXXXXXGSSRLKSRRFITRIEINGNNXXXXXXXXXXXXMMSVSWPASMKRLEFGARFNSPVEGV 237
            +P +LADH+WPGSS  A RQR        G G+            G+ RL+ RR ITR+++  +             + + SWP++M+RLEFG RFNSPVEGV
Sbjct:  118 MPARLADHIWPGSSALALRQRGER-----GGGKDGGQGGGGTQAAGA-RLEPRRRITRVKVKSD-----------VGVTAASWPSTMRRLEFGGRFNSPVEGV 203
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.538.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LB40_9PHAE8.430e-2042.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZV7_ECTSI9.520e-840.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008615FNIPPFAMPF05725FNIPcoord: 274..315
e-value: 1.3E-4
score: 22.1
coord: 230..273
e-value: 1.1E-4
score: 22.3
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 218..402
NoneNo IPR availablePANTHERPTHR32134:SF86coord: 218..402

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2036578..2038493 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.538.1mRNA_C-linearis_contig10.538.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 2034376..2038805 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.538.1 ID=prot_C-linearis_contig10.538.1|Name=mRNA_C-linearis_contig10.538.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=448bp
MEKKEENRRDDDDEESCRPSGPPPALPPPRPSSPPPPSSAAEAVTPGPPA
SATQPQQRQQPVSRTRLINFDNGTLDDSRDHTTKALTLAALSGFIQSGGA
STFQQVSLTLSDACRALAPWSLRVGAAGDGTGQPRLPPQLADHLWPGSSQ
SARQRPAVTSFAGGSGRGGGGGGGGSRGAGSSRLKSRRFITRIEINGNNG
SGGHGGGGGGGMMSVSWPASMKRLEFGARFNSPVEGVSLPDGVEVVKFGA
GFNQPVSRIRWPPCLRELAFGNDFNQPVSGIGLPAGLRRLDFGGRFNFPI
SAVDLPKGLREIRFGHGFNREIASVRWPPRLSNLEFCGELQQRVEELALP
ETLTHLTLLGDFDQPIHAVEWPPGLTTVRFGDRFRQTVTAAAWPPSLRTL
VVGPGYDMRLLRAGCGRGCSGGDGAAGSLSSTGAVASEARAPVAGDC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008615FNIP