prot_C-linearis_contig10.534.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.534.1
Unique Nameprot_C-linearis_contig10.534.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length154
Homology
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BLAST of mRNA_C-linearis_contig10.534.1 vs. uniprot
Match: D7FZW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW0_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 6.950e-46
Identity = 88/111 (79.28%), Postives = 95/111 (85.59%), Query Frame = 0 
Query:    4 GGSAKKRGRGGWKKDYTVIASVESKAGEAAA--AAAGWFVNGDARYACYEELPADMRPHVGDVLAFKTLSLNEETWTPELSSYRTAEVSAFDTASGMVRLFPVFLEDSDRE 112
            GGSAKKRGRGGWKKDY VIASVESKAGEAAA  AAAG   NGDARY  YEELP DMRP V DVLAFKTLSLNEETWTPELS YRTAEV+AFDT+SG+VRL P  +ED +++
Sbjct:  131 GGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENGDARYVVYEELPTDMRPQVCDVLAFKTLSLNEETWTPELSPYRTAEVTAFDTSSGLVRLLPASIEDDNKD 241
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BLAST of mRNA_C-linearis_contig10.534.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 9.500e-42
Identity = 86/114 (75.44%), Postives = 91/114 (79.82%), Query Frame = 0 
Query:    4 GGSAKKRGRGGWKKDYTVIASVESKAGEAAA--AAAGWFVNGDARYACYEELPADMRPHVGDVLAFKTLSLNEETWTPELSSYRTAEVSAFDTASGMVRLFPVFLEDSDREANG 115
            GGSAKKRGRGGWKKDY VIASVESKAGEAAA  AAAG   N DARY  YEELP DMRP V DVLAFKTLSLNEETWTPELS YR AEV AFD +SG+VRL P   ED +++  G
Sbjct:  592 GGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRMAEVIAFDASSGLVRLRPASTEDDNKDGGG 705
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.534.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZW0_ECTSI6.950e-4679.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4H0_9PHAE9.500e-4275.44Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR15197:SF0COILINcoord: 49..106
IPR024822CoilinPANTHERPTHR15197COILIN P80coord: 49..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2023141..2024932 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.534.1mRNA_C-linearis_contig10.534.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 2023139..2024932 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.534.1 ID=prot_C-linearis_contig10.534.1|Name=mRNA_C-linearis_contig10.534.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=154bp
GDGGGSAKKRGRGGWKKDYTVIASVESKAGEAAAAAAGWFVNGDARYACY
EELPADMRPHVGDVLAFKTLSLNEETWTPELSSYRTAEVSAFDTASGMVR
LFPVFLEDSDREANGGGGGDGAAAAGPGHQQQDRHQQEEGGFTSAAPSAH
AGEG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024822Coilin