Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR003368 | Polymorphic outer membrane protein repeat | TIGRFAM | TIGR01376 | TIGR01376 | coord: 133..155
e-value: 6.0E-4
score: 17.5 |
| IPR003368 | Polymorphic outer membrane protein repeat | PFAM | PF02415 | Chlam_PMP | coord: 136..152
e-value: 0.13
score: 12.8 |
| None | No IPR available | PANTHER | PTHR19862 | FAMILY NOT NAMED | coord: 189..270
coord: 15..192 |
| IPR011050 | Pectin lyase fold/virulence factor | SUPERFAMILY | 51126 | Pectin lyase-like | coord: 76..282 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_C-linearis_contig10.460.1 ID=prot_C-linearis_contig10.460.1|Name=mRNA_C-linearis_contig10.460.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=295bp
VFGRNVTSLHISGTSTLSENSASTAGGAFAAERSSLTMDTQRSEFANNTA
VSGDGGAISLDGRGDIVDDGTTALLIGGTTFFTGNAAKNSSGGALHVQSS
TLTVVGNTTFLFNVAGIDGGAVHTTQCREVGVRGDTLFESNTVPGSGGGF
YGGSCDKVSLEDATFRSNHATWGGAVALVSCGEDATVRGSAATTSACTFD
GNEASDGGGIYSASGFDQISDSTFVNNVAASSGGALAHSSVLLALTGSTF
RNNTAREEGYAVMSLGPLHSMDGLVFDANVQYCGVGTYGYERIEV back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003368 | POMP_repeat |
| IPR011050 | Pectin_lyase_fold/virulence |
|