mRNA_C-linearis_contig99.17197.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: D7G411_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G411_ECTSI) HSP 1 Score: 408 bits (1048), Expect = 1.620e-118 Identity = 205/249 (82.33%), Postives = 225/249 (90.36%), Query Frame = 2 Query: 134 IDGGGGAVARLLGMPMGFRNTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFSKAWL-GAKEPGADEVISDYSAPARPPPPLATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLGAGWQWEGALRVRDRAGDPWESRYVLLLGHRLAWWGSAKELDDGRKARGQLLLQGHAGITHLSPLEAREVIDPRKVVCVFGRSPDGLPH 877
+ GGGGAVARLLGMPMGFRNTIR+VQ TIGTVLDTVEAVKNLLNWTHPPKTL+VYA+VAL W+VLLVVPGRYIVLTLGLLEFSKAW+ G +EP E+++D A P LA KL NLL+SLPVDSELAACYAWEAREHS+K KA LKLREQRARLKLLGAG QWEG +RVRDRAGDPWE RY+++LGHRLAWWGS+KELDDG+KARGQLLLQGHAG+THLSPLEARE+ DPRKVVCVFGRSPDGLPH
Sbjct: 1738 VAGGGGAVARLLGMPMGFRNTIRDVQDTIGTVLDTVEAVKNLLNWTHPPKTLLVYAIVALAWLVLLVVPGRYIVLTLGLLEFSKAWMTGGQEP---ELVADGGGGA--PSHLAIKLRNLLLSLPVDSELAACYAWEAREHSRKEKAGLKLREQRARLKLLGAGRQWEGEMRVRDRAGDPWEPRYLVVLGHRLAWWGSSKELDDGKKARGQLLLQGHAGVTHLSPLEARELTDPRKVVCVFGRSPDGLPH 1981
BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: A0A6H5L011_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L011_9PHAE) HSP 1 Score: 402 bits (1033), Expect = 2.130e-116 Identity = 202/243 (83.13%), Postives = 220/243 (90.53%), Query Frame = 2 Query: 152 AVARLLGMPMGFRNTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFSKAWL-GAKEPGADEVISDYSAPARPPPPLATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLGAGWQWEGALRVRDRAGDPWESRYVLLLGHRLAWWGSAKELDDGRKARGQLLLQGHAGITHLSPLEAREVIDPRKVVCVFGRSPDGLPH 877
AVARLLGMPMGFRNTIR+VQ TIGTVLDTVEAVKNLLNWTHPPKTL+VY +VAL W+VLLVVPGRYIVLTLGLLEFSKAW+ G +EP E+++D P PLA KL NLL+SLPVDSELAACYAWEAREHS+K KA LKLREQRARLKLLGAG QWEG +RVRDRAGDPWESRYV++LGHRLAWWGS+KELDDG+KARGQLLLQGHAG+THLSPLEARE+ DPRKVVCVFGRSPDGLPH
Sbjct: 1881 AVARLLGMPMGFRNTIRDVQDTIGTVLDTVEAVKNLLNWTHPPKTLLVYTVVALAWLVLLVVPGRYIVLTLGLLEFSKAWMTGGQEP---ELVADDGGGT--PSPLAIKLRNLLLSLPVDSELAACYAWEAREHSRKEKAGLKLREQRARLKLLGAGRQWEGGMRVRDRAGDPWESRYVVVLGHRLAWWGSSKELDDGKKARGQLLLQGHAGVTHLSPLEARELNDPRKVVCVFGRSPDGLPH 2118
BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: A0A7S3H4K2_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4K2_9STRA) HSP 1 Score: 135 bits (340), Expect = 7.180e-31 Identity = 79/238 (33.19%), Postives = 128/238 (53.78%), Query Frame = 2 Query: 191 NTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFSKAWLGAKEPGADEVISDYSAPARPPPPLATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLGAGWQWEGALRVRDRA---------GDPWESRYVLLLGHRLAWWGSAKELDDGRKARGQLLLQGHAGITHLSPLEAREVIDPRKVVCVFGRSPDGLPH 877
+ ++ VQ + +LD +E++KNLLNWT P KT +Y + VW+V ++VPGR IVL +GL EF ++ E G + +I + NL+ S+P D +LA Y E + ++ +A K E+ +L+L+ W G + ++ + G+ W ++LL G RL WW S + LD G+ A GQLLL GH+G+ +SP++ R+ +++ VFG+ G P
Sbjct: 116 DNVKYVQNMMSGLLDQIESLKNLLNWTSPSKTFPLYVALVAVWLVTILVPGRLIVLAIGLYEFFFVFMPIPE-GRNTMI---------------RFGNLVQSIPNDDDLAQIYGTEKKAYAASKQAEWKHTEKSRKLQLV-LDSPWHGLVSIKGSSSSSGHLAGSGEEWVEVFLLLQGRRLVWWVSEEALDQGKMAAGQLLLCGHSGLAQVSPMDIRKFGGDSRLIAVFGQDYVGRPQ 336
BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: A0A4D9CW43_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW43_9STRA) HSP 1 Score: 137 bits (344), Expect = 2.960e-29 Identity = 84/232 (36.21%), Postives = 127/232 (54.74%), Query Frame = 2 Query: 185 FRNTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFSKAWLGAKEPGADEVISDYSAPARPPPPLATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLGAGWQ--WEGALRVRDRAGD-PWESRYVLLLGHRLAWWGSAKELDDG--RKARGQLLLQGHAGITHLSPLEAREVIDPRK--VVCVFGRS 859
R+T++ Q + L E+ KNLLNWTHP KTL +YA + +W++ L++P RY++L GL EF+ +E +Y P + ENLL S+P D +L Y E + +K + +++ Q+AR L W WEG ++ R + PW Y + G+R+ WW + K+LD G R GQ++L+GHAG+T SPLE RE+ R +VC+FGR+
Sbjct: 713 LRSTVKHFQNLLDGYLSYAESWKNLLNWTHPQKTLAIYAALWALWLICLLLPTRYLILVAGLYEFTFRLFPEQE--------EY--------PNVIRAENLLASIPNDDDLRRVYYQENQNFLRKKRE--RVQNQKARRAHLSGVWGFLWEGNVQTRAAGSNQPWRQAYAAVQGNRILWWKTEKDLDRGGIRVPEGQIILRGHAGLTSPSPLEVRELGPARASLLVCMFGRN 926
BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: A0A7S2KPX7_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KPX7_9STRA) HSP 1 Score: 134 bits (338), Expect = 1.730e-28 Identity = 87/255 (34.12%), Postives = 138/255 (54.12%), Query Frame = 2 Query: 164 LLGMPMGFRNTIREV-------QGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEF------SKAWLGAKEPGADE----VISDYSAPARPPPPLATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLG-AGWQWEGALRVR-DRAGDPWESR--YVLLLGHRLAWWGSAKELDDGRKARGQLLLQGHAGITHLSPLEAREVIDPR--KVVCVFGRS 859
++G + NT+R + Q T+G +LD VE+ +NL W P K+++V++ +++VW+VL ++P R+I+L+ GL EF + + + E G + + S +P P+ T NL+ ++P D +L Y WEAR + L ++ +RLK L A W E L+V + AG WE R + +L GHRL WW S+ + D G K GQ+L GHAG+ LSPL+ R++ + + VFGR
Sbjct: 752 MIGSSINTINTVRGMGGNAQWLQNTLGNLLDFVESFRNLFTWACPQKSMLVFSALSMVWIVLCIIPTRFIILSAGLYEFVGKHIMTAFSVDSSEDGNESDXXXXXXENSIDNQPSIPILTHFYNLVAAVPNDEDLRRAYFWEARRMGGVERDDLAQSKRISRLKSLWRARWYGELYLKVSANAAGTGWEWRNIFTILQGHRLVWWVSSHDFDRGNKPLGQILFAGHAGLAGLSPLDLRQMQKNEFSRAISVFGRG 1006
BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: W7TX45_9STRA (Protein c kinase isoform a n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TX45_9STRA) HSP 1 Score: 134 bits (336), Expect = 4.100e-28 Identity = 80/226 (35.40%), Postives = 122/226 (53.98%), Query Frame = 2 Query: 185 FRNTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFSKAWLGAKEPGADEVISDYSAPARPPPPLATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLGAGWQ--WEGALRVRDRAGD-PWESRYVLLLGHRLAWWGSAKELDDG--RKARGQLLLQGHAGITHLSPLEAREVIDPRKVVCV 847
R+T++ Q + L E+ KNLLNWTHP KTL +YA + +W++ L++P RY++L GL EF+ +E +Y P + ENLL S+P D +L Y E + +K + +++ Q+AR L W WEG ++ R + PW Y + G+R+ WW + K+LD G R GQ++L+GHAG+T SPLE RE + V+C+
Sbjct: 1262 LRSTVKHFQNLLDGYLSYAESWKNLLNWTHPQKTLAIYAALWALWLICLLLPTRYLILVAGLYEFTFRLFPEQE--------EY--------PNVIRAENLLASIPNDDDLRRVYYQENQNFLRKKRE--RVQNQKARRAHLSGVWGFLWEGNVQTRAAGSNQPWRQAYAAVQGNRILWWKTEKDLDRGGIRVPEGQIILRGHAGLTSPSPLEVREAVREDWVICI 1469
BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: A0A448Z8C7_9STRA (Phorbol-ester/DAG-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z8C7_9STRA) HSP 1 Score: 130 bits (327), Expect = 4.840e-27 Identity = 83/277 (29.96%), Postives = 144/277 (51.99%), Query Frame = 2 Query: 134 IDGGGGAVARLLGMPMGFRNTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFSKAW----------LGAKEPGADEVISDYSAPARPPP------PLATKLENLLMSLPVDSELAACYAWEARE--HSKKAKASLKLREQRARLKLLGAGWQWEGALRVRDRAGD-------PWESRYVLLLGHRLAWWGSAKELDDGRKARGQLLLQGHAGITHLSPLEAREVIDPRKV---VCVFGRSPDGLPHI 880
+D G+V++ G+ TI+ VQ T+G+++D VE V NLLN+T P K+ ++ LVWVV ++P RY++L+ GL+++ ++ +G K P + ++ + P A K+ N + S+P + +L Y WE+R+ +K K +++ RE R + KL A W + V+D D W+S + ++ GHR WW S + DDG G++++ GHAG+ SP+E R++ +++ + +FGR G I
Sbjct: 1181 VDSSIGSVSKAFGIG----GTIQVVQNTLGSIIDLVEGVMNLLNFTDPYKSSTIFVGSFLVWVVFCIIPTRYLILSAGLVQYGVSFVDRYGKALGIIGGKTPVESTLQIEHDKSSNEEDKNGKGSPFAIKVANAIRSIPTNEDLRKAYFWESRQLGTAKAKKYTVEKRESRLK-KLWKAKWHSTMKILVQDNEMDNNQQPVFQWDSGFAVVQGHRFIWWKSVNDFDDGELPSGKVIMSGHAGLGGPSPIEMRKLDKEKELPLCLTIFGRGSGGQERI 1452
BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: A0A7S4AIS0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AIS0_9STRA) HSP 1 Score: 129 bits (323), Expect = 1.440e-26 Identity = 85/278 (30.58%), Postives = 145/278 (52.16%), Query Frame = 2 Query: 134 IDGGGGAVARLLGMPMGFRNTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFS--------KAWLG--AKEPGADEVIS-------DYSAPARPPPPLATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLGAGWQWEGALRV------RDRAGDP---WESRYVLLLGHRLAWWGSAKELDDGRKARGQLLLQGHAGITHLSPLEAREV-IDPRKVVC--VFGRSPDGLPHI 880
+D G+V++ G+ TI+ VQ T+ +++D +EAV N+LN+T P K+ MV+ LVWV+ ++P RY++L GL ++ K LG +K+ A+ I + R P K+ N + S+P + +L Y WE+R+ + + ++ +RLK L +W ++++ RD++ P WES + ++ GHR WW SA E DDG G+++L GHAG+ SP+E +++ ++ +C VFG+ G I
Sbjct: 1164 VDSSIGSVSKAFGIG----GTIQVVQNTLASIIDRIEAVINILNFTDPYKSSMVFVGSFLVWVLFCIIPTRYLILFAGLAQYGITFVDKYVKKLLGIKSKKKSAESAIEIDQNGGLELDDKERKASPFGIKITNAVRSIPTNEDLRKTYFWESRQLGTEKAKKYAVEKRESRLKKLWKA-KWHSSMKILVQDSERDQSQQPMFHWESGFAVVQGHRFIWWTSADEFDDGELPNGKVILSGHAGLGGPSPIEMKKLDMEKELPLCLTVFGKGFAGQERI 1436
BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: A0A7R9ZTF2_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZTF2_9STRA) HSP 1 Score: 120 bits (301), Expect = 1.600e-24 Identity = 79/261 (30.27%), Postives = 131/261 (50.19%), Query Frame = 2 Query: 179 MGFRNTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFSKAWLGA--------KEPGADEVISDYSAPA------RPPPP-LATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLGAGWQ--WEGALRVRDR--------------AGD-PWESRYVLLLGHRLAWWGSAKELDDGRKARGQLLLQGHAGITHLSPLEAREVI--DPRKVVCVFGRS 859
M +T++ +Q + +L+ ++ ++NL N+T P K+ +V+A L+WV+L+ VP RY++L +G+ +F + K+ GA + S +P PP + L N + +LP + +L Y W++R S + ++ +RL+ L WQ W G R+R+ A D W +V+L GHRL WW A+ D G G L L GH+G+T+ SPLE R + D ++VC+FG+
Sbjct: 316 MSVGDTLQTIQNVLCAILNAIDVLRNLFNFTDPFKSSIVFASTFLIWVLLICVPSRYLILAIGMSQFVAGFFARRQGSKKRRKKSGAKNKANKASGTMHRHVGDKPRPPFIVVWLRNFIRTLPTNEDLRKTYFWQSRLASARFMEEHAFAKRTSRLQKL---WQATWYGQARLRENSLANAAMKTGAVSPASDMAWLDVFVVLQGHRLLWWSDARSFDVGDTPVGSLFLAGHSGLTNPSPLELRRIPKEDLDRIVCIFGKG 573
BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: F0Y808_AURAN (Phorbol-ester/DAG-type domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y808_AURAN) HSP 1 Score: 118 bits (295), Expect = 2.780e-23 Identity = 75/226 (33.19%), Postives = 120/226 (53.10%), Query Frame = 2 Query: 209 QGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFSKAWLGAKEPGADEVISDYSAPARPPPPLATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLGAGWQ--WEGALRVRDRAGDPWESRYVLLLGHRLAWWGSAKELDDGRKARGQLLLQGHAGITHLSPLEAREVIDPRK--VVCVFGRSPDGLP 874
Q +G LD +E++KNL+NWTHP KT +++ V + V+ + R++ L GL EF+ L P + ++ + N L ++P D +L ACY A H+ + S + R +RARL + W WEG + +R A ++ R ++L G RL W S +++D GR QLLLQGH+G+T +P + + D R+ ++ VFG++ DG P
Sbjct: 971 QNALGRYLDVMESMKNLVNWTHPEKTGLIFVGVLVGAVLFCRIKTRWLTLAFGLYEFTYRLL----PSSASTVT-------------CRFLNALKAVPNDRDLRACYGHRAALHAGRLVDSERRRRRRARLHAI---WDCGWEGGVELRPDASSAFDRRRLVLHGRRLLAWRSERDVDAGRPPAAQLLLQGHSGLTAPAPTDGAGLPDDRRAHMLAVFGQASDGAP 1176 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17197.1 >prot_C-linearis_contig99.17197.1 ID=prot_C-linearis_contig99.17197.1|Name=mRNA_C-linearis_contig99.17197.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=268bp MPMGFRNTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVback to top mRNA from alignment at C-linearis_contig99:612827..617910+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17197.1 ID=mRNA_C-linearis_contig99.17197.1|Name=mRNA_C-linearis_contig99.17197.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5084bp|location=Sequence derived from alignment at C-linearis_contig99:612827..617910+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:612827..617910+ >mRNA_C-linearis_contig99.17197.1 ID=mRNA_C-linearis_contig99.17197.1|Name=mRNA_C-linearis_contig99.17197.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1608bp|location=Sequence derived from alignment at C-linearis_contig99:612827..617910+ (Chordaria linearis ClinC8C monoicous)back to top |