Homology
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match:
A0A6H5KU27_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KU27_9PHAE)
HSP 1 Score: 509 bits (1310), Expect = 2.140e-169
Identity = 330/521 (63.34%), Postives = 348/521 (66.79%), Query Frame = 1
Query: 124 MTMTDRTEEFRGAVNVFRPTVTVVKDSSEAAATRAQSDLGYRKTSEFLQLASSVAVGFEGTSKLIGRLKKLVGRKGFSNNPAAEINEVMKLFEEDMAGLQRDISSLQRHADGKTRGSPPINSQRQMHCAFIVTTLRKSAQEHTKAFRDALLLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGNGGASGPRRRGRPXXXXXXXXXXXXXXXPLDGDDEDNKGHKTSGRVAGMGLATSTAAAVVSSLPFPSGRPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCWPQKTG-PPPWP------GXXXXXXXXXXXSGYSNGAAGA------PPGVLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG--------APPGVPLHPPEPPRASSGATGLRKRPGREDGCDGDEEARRAAWQVQVQEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFLGLMR 1623
MTMTDRT+EF GAV+ FRPTVT V +S EAA RAQ+DLGYRKTSEFLQLA+SVAVGFEGTS+LIGRLKKLVGRKGFSNNPAAEI++VMKLFE DMAGLQ+DISSLQR+ADG TRGSPP NSQRQMHCAFIVTTLR+SAQEHTKAFRDAL+LRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFG+ SG XXXXX XXXX DNKGHK R G S LPFPSG G S WPQK+ P PW G GY A GA P XXXX GG APPG P E R ATGLRKRPGREDG D +EE+RRAAWQVQVQEDSK RVDESHKVEKMIG+LG MFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQI SGNRGIIIKVFIMLI+ IWVFLGLMR
Sbjct: 1 MTMTDRTKEFHGAVSAFRPTVTAVNNSGEAALIRAQTDLGYRKTSEFLQLAASVAVGFEGTSRLIGRLKKLVGRKGFSNNPAAEISDVMKLFEGDMAGLQKDISSLQRYADGGTRGSPPANSQRQMHCAFIVTTLRRSAQEHTKAFRDALMLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGS---SGXXXXXXXXXXXXTANLPSXXXXXXXXXXXDNKGHKHGPRKGGK---------AASVLPFPSGNGGTRAGGGTGG-------------------SSWPQKSAVPAPWSAEGGRNGNGNNCSTGVGKGGYD--AVGAMPRATEPAAXXXXXXXRTDSNGGFRAGPHTAPTFGSANGYVPPAAGGGSGRAHAAAPPGFPPLRTEASRGGGRATGLRKRPGREDGGDAEEESRRAAWQVQVQEDSKTRVDESHKVEKMIGDLGHMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQITSGNRGIIIKVFIMLIVCIWVFLGLMR 488
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match:
A0A835ZFW2_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW2_9STRA)
HSP 1 Score: 106 bits (264), Expect = 5.770e-24
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 1
Query: 1393 MIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVF 1608
MIGELG MFS+FS +VAAQEE V+HIEDDVE AH FA +G AHL++YYQ +SGNRGII+KV I+L F+WVF
Sbjct: 1 MIGELGHMFSKFSALVAAQEETVVHIEDDVEMAHGFAVDGHAHLSRYYQTISGNRGIIVKVLILLAFFVWVF 72
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match:
A0A7S2XXW7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXW7_9STRA)
HSP 1 Score: 84.3 bits (207), Expect = 6.720e-16
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 1
Query: 1336 VQVQEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFLGLMR 1623
++Q SK RV+E+ +E I E MFS+ +TMVA Q E+V I+DD+E A G L +YY I+SGNRG+IIK+FI L++FI++F+ L +
Sbjct: 10 AELQTSSKQRVEEARSIEATISEFATMFSKMATMVAQQGELVTRIDDDMELALGNVSAGHTELTRYYSIISGNRGLIIKIFITLMVFIFLFVVLFK 105
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match:
I2CQ48_NANGC (t-SNARE coiled-coil homology domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ48_NANGC)
HSP 1 Score: 80.9 bits (198), Expect = 1.510e-14
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1
Query: 1345 QEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 1611
Q D+ +R+ E+ VEK I ELGQ FSR + +VAAQ EVVM I+DD+EAA ++G A + Y +I+ GNR +I KVF +L++FI VF+
Sbjct: 25 QRDTASRLREARAVEKAIVELGQTFSRMAGLVAAQGEVVMRIDDDMEAALEDVQKGHAEMVNYLRIVKGNRAVIFKVFALLLVFIVVFV 113
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match:
F0Y6L6_AURAN (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6L6_AURAN)
HSP 1 Score: 78.6 bits (192), Expect = 5.100e-14
Identity = 41/90 (45.56%), Postives = 63/90 (70.00%), Query Frame = 1
Query: 1342 VQEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 1611
+++ S+ R+D +H +EK IG+LG++FSRFS++VA Q EVV ++DDVE A E G A L K +++ GNR + +KVF +LI I +F+
Sbjct: 2 LEQTSRRRLDTAHNIEKEIGKLGEVFSRFSSLVAQQAEVVERLDDDVEGALGEVEMGHAELLKAQEVLRGNRALFLKVFAVLIALIVLFV 91
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match:
A0A7S3H3X9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3X9_9STRA)
HSP 1 Score: 79.3 bits (194), Expect = 2.630e-12
Identity = 39/84 (46.43%), Postives = 59/84 (70.24%), Query Frame = 1
Query: 1360 ARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 1611
+R + V+K IGEL QMFS+ + +V AQEE++ I+ D+++ +EGQ HL KY+Q +S NRG+IIKVF++LI F+ F+
Sbjct: 216 SRAEAVQNVQKTIGELAQMFSKMAVLVTAQEEMIQRIDSDLDSTITNVDEGQQHLLKYFQYISSNRGLIIKVFLILIFFVVFFV 299
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match:
A0A485LIS1_9STRA (Aste57867_21905 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIS1_9STRA)
HSP 1 Score: 82.4 bits (202), Expect = 2.630e-12
Identity = 50/134 (37.31%), Postives = 87/134 (64.93%), Query Frame = 1
Query: 1222 LHPPEPPRASSGATGLRKRPGREDGCDGDEEARRAAWQ-VQVQEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFLGLM 1620
LHP +P + A G+R+RP +G G A++ Q + +++R++++ VE MIGE+G M+SR + ++A QEE++ IEDD+ AH+ E G L KY+ +S NR +I+K+F++L++FI++FL ++
Sbjct: 197 LHPVQP-QGPDAAAGMRRRPFM-NGATGSSYAQQQQQQNLMRHRTAQSRLNDAQNVEAMIGEIGGMYSRMTGLLANQEEMLGRIEDDMTTAHSNVEGGYEELMKYFSTVSSNRSLILKIFLVLLVFIYLFLVVL 328
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match:
A0A4D9CWV4_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV4_9STRA)
HSP 1 Score: 77.8 bits (190), Expect = 1.760e-11
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 1
Query: 1345 QEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 1611
Q D+ +R+ E+ VEK I ELGQ FSR + +VAAQ EVV+ I+DD+EAA ++G + Y +I+ GNR +I KVF +L++FI VF+
Sbjct: 278 QRDTASRLREARAVEKAIVELGQTFSRMAGLVAAQGEVVVRIDDDMEAALEDVQKGHVEMVNYLRIVKGNRAVIFKVFALLLVFIVVFV 366
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match:
A0A6G0WSE7_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSE7_9STRA)
HSP 1 Score: 76.6 bits (187), Expect = 2.340e-11
Identity = 37/86 (43.02%), Postives = 63/86 (73.26%), Query Frame = 1
Query: 1354 SKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 1611
++AR++++ +E I E+G M+SR + ++A+QEE++ IEDD+ AHA E G L KY+ +S NR +I+K+F++L+LFI++FL
Sbjct: 224 AQARLNDAQHMEATISEIGGMYSRMTGLLASQEEMLGRIEDDMTTAHANVESGYEELMKYFSTVSSNRSLILKIFLILLLFIYLFL 309
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match:
A0A1V9YVH0_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVH0_9STRA)
HSP 1 Score: 73.6 bits (179), Expect = 2.430e-10
Identity = 37/86 (43.02%), Postives = 62/86 (72.09%), Query Frame = 1
Query: 1354 SKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 1611
++AR++++ ++E I E+G M SR S+++A+Q EV+ I+DD+ A E G L KY+ MSGNR +I+K+FI+L++FI++FL
Sbjct: 223 AQARLNDALQMESTIAEIGSMHSRMSSLIASQGEVLERIDDDMTLAQDNVEAGHNELLKYFATMSGNRSLILKIFIILLVFIYLFL 308
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 2.14e-169 / Id = 63.34 Expect = 5.77e-24 / Id = 70.83 Expect = 6.72e-16 / Id = 45.83 Expect = 1.51e-14 / Id = 50.56 Expect = 5.10e-14 / Id = 45.56 Expect = 2.63e-12 / Id = 46.43 Expect = 2.63e-12 / Id = 37.31 Expect = 1.76e-11 / Id = 48.31 Expect = 2.34e-11 / Id = 43.02 Expect = 2.43e-10 / Id = 43.02 Sequence A0A6H5KU27_9PHAE A0A835ZFW2_9STRA A0A7S2XXW7_9STRA I2CQ48_NANGC F0Y6L6_AURAN A0A7S3H3X9_9STRA A0A485LIS1_9STRA A0A4D9CWV4_9STRA A0A6G0WSE7_9STRA A0A1V9YVH0_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 528.1 Seed ortholog evalue 4.5e-147 Seed eggNOG ortholog 2880.D8LR19 Preferred name STX5 KEGG ko ko:K08490 KEGG Pathway ko04130,map04130 Hectar predicted targeting category other localisation GOs GO:0000003,GO:0000139,GO:0000149,GO:0000278,GO:0000280,GO:0000281,GO:0000902,GO:0000910,GO:0001505,GO:0002164,GO:0002376,GO:0002520,GO:0002790,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0005886,GO:0006810,GO:0006836,GO:0006873,GO:0006875,GO:0006878,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006900,GO:0006901,GO:0006903,GO:0006904,GO:0006906,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0008104,GO:0008150,GO:0008283,GO:0008361,GO:0009306,GO:0009653,GO:0009791,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010256,GO:0010604,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016197,GO:0016482,GO:0017156,GO:0019222,GO:0019725,GO:0019953,GO:0022402,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0023061,GO:0030003,GO:0030097,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031201,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033116,GO:0033206,GO:0034498,GO:0034613,GO:0035166,GO:0035167,GO:0042147,GO:0042175,GO:0042176,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045055,GO:0045184,GO:0045732,GO:0045786,GO:0045930,GO:0046903,GO:0046907,GO:0046916,GO:0046983,GO:0047485,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048278,GO:0048280,GO:0048284,GO:0048285,GO:0048308,GO:0048313,GO:0048489,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048534,GO:0048542,GO:0048569,GO:0048609,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051128,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051726,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0060305,GO:0061024,GO:0061025,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090114,GO:0090166,GO:0090174,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140013,GO:0140029,GO:0140056,GO:1903008,GO:1903046,GO:1903047,GO:1903358 EggNOG free text desc. vesicle docking EggNOG OGs KOG0812@1,KOG0812@2759 COG Functional cat. U Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko04131 Exons 8 Model size 2577 Cds size 1503 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930852.393124-UTR-C-linearis_contig99:415694..416062 1622930852.393124-UTR-C-linearis_contig99:415694..416062 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 415695..416062 - 1690881282.8271663-UTR-C-linearis_contig99:415694..416062 1690881282.8271663-UTR-C-linearis_contig99:415694..416062 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 415695..416062 - 1622930852.4109027-UTR-C-linearis_contig99:416108..416691 1622930852.4109027-UTR-C-linearis_contig99:416108..416691 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 416109..416691 - 1690881282.8389137-UTR-C-linearis_contig99:416108..416691 1690881282.8389137-UTR-C-linearis_contig99:416108..416691 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 416109..416691 - 1622930852.5624223-UTR-C-linearis_contig99:421011..421134 1622930852.5624223-UTR-C-linearis_contig99:421011..421134 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 421012..421134 - 1690881282.9114292-UTR-C-linearis_contig99:421011..421134 1690881282.9114292-UTR-C-linearis_contig99:421011..421134 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 421012..421134 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930852.4301915-CDS-C-linearis_contig99:416691..416788 1622930852.4301915-CDS-C-linearis_contig99:416691..416788 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 416692..416788 - 1690881282.8480046-CDS-C-linearis_contig99:416691..416788 1690881282.8480046-CDS-C-linearis_contig99:416691..416788 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 416692..416788 - 1622930852.4509337-CDS-C-linearis_contig99:417214..417360 1622930852.4509337-CDS-C-linearis_contig99:417214..417360 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 417215..417360 - 1690881282.8587928-CDS-C-linearis_contig99:417214..417360 1690881282.8587928-CDS-C-linearis_contig99:417214..417360 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 417215..417360 - 1622930852.4713488-CDS-C-linearis_contig99:417784..417885 1622930852.4713488-CDS-C-linearis_contig99:417784..417885 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 417785..417885 - 1690881282.8671265-CDS-C-linearis_contig99:417784..417885 1690881282.8671265-CDS-C-linearis_contig99:417784..417885 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 417785..417885 - 1622930852.4864142-CDS-C-linearis_contig99:418351..419045 1622930852.4864142-CDS-C-linearis_contig99:418351..419045 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 418352..419045 - 1690881282.8753345-CDS-C-linearis_contig99:418351..419045 1690881282.8753345-CDS-C-linearis_contig99:418351..419045 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 418352..419045 - 1622930852.5037622-CDS-C-linearis_contig99:419551..419693 1622930852.5037622-CDS-C-linearis_contig99:419551..419693 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 419552..419693 - 1690881282.8834662-CDS-C-linearis_contig99:419551..419693 1690881282.8834662-CDS-C-linearis_contig99:419551..419693 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 419552..419693 - 1622930852.52387-CDS-C-linearis_contig99:419983..420114 1622930852.52387-CDS-C-linearis_contig99:419983..420114 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 419984..420114 - 1690881282.8923154-CDS-C-linearis_contig99:419983..420114 1690881282.8923154-CDS-C-linearis_contig99:419983..420114 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 419984..420114 - 1622930852.5437758-CDS-C-linearis_contig99:420819..421011 1622930852.5437758-CDS-C-linearis_contig99:420819..421011 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 420820..421011 - 1690881282.9009204-CDS-C-linearis_contig99:420819..421011 1690881282.9009204-CDS-C-linearis_contig99:420819..421011 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 420820..421011 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17185.1
>prot_C-linearis_contig99.17185.1 ID=prot_C-linearis_contig99.17185.1|Name=mRNA_C-linearis_contig99.17185.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=501bp
MTMTDRTEEFRGAVNVFRPTVTVVKDSSEAAATRAQSDLGYRKTSEFLQL back to top mRNA from alignment at C-linearis_contig99:415695..421134-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17185.1 ID=mRNA_C-linearis_contig99.17185.1|Name=mRNA_C-linearis_contig99.17185.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5440bp|location=Sequence derived from alignment at C-linearis_contig99:415695..421134- (Chordaria linearis ClinC8C monoicous)AAATCATCGATAACATCGAGAGAGGCCTCTTCCCTGCAAAACCGGGGGGT
TGTCCAGCGCTTAGATTTGCGCTGTGCACGTTCAGTGTATGGTGTCGCCA
ACACTCTCATCCGGCGGTCGACG ATGACGATGACAGACCGGACGGAAGAG
TTCCGCGGGGCGGTGAACGTCTTCCGCCCCACGGTGACGGTGGTGAAGGA
CAGCAGCGAGGCGGCGGCGACCAGGGCGCAGTCGGACCTCGGGTATCGGA
AGACGTCGGAGTTTCTCCAGCTTGCGTCCAGCGTGGCTGTCGGCTTCGAG
GGCACGTCCAAGCTG GTGCGTGGGGGGTCGATGGGGTGATGTTGGTTCGA
AGTAAGGTGTGGATAGGCAAGGTGTTTTGTGGTGTTGCTGGTGGTGTGGT
TGATGCGCAGGAGAGGGAGGGCAAAAATCGCCTGGTTGTGTTGTGCTTCC
TCTGTCAGATGAAGTCTCGAGACTACATCTGTCTTTGGCGGTACGATGGG
TACTGCTGTAGCGTCAAAAGCAAGGCCAACCAGGTTTTGCTTGTCTTGTG
CGCGGCCTGGTTCTTGTTGTTCTGCTGTGTGAATCGCTGTGCACAGCACT
ACTGCTACTTGTATAAGCAAATTCTGCTCGATGCACAATTCATACTCGAC
AGAAATGTAATTGTTTCACGACCAAACAACGGCACGAGCACATGAGTTTC
GCGCGGCTTCGCAGGCCTGCATCCCTCCGTGCACTCAACGCGCACAGAAT
CATAATCACCCGATGCAAAGAAATGAAAGCTGGTGTGGGATGGGATGCAA
CCTCTATATTCCAAGCGCAAAAACTTTGATTTATAAAAAACCGAGCGGTC
TCTTTTCGTGGAACGGTATCGACCAACGTTTGCGGTGTTCCAGTCGCCAC
TGCTGTACGTGCATACTTAGTGCCCCATGTGGCTTGCACGTACAGCGGTA
TATTCGACGAGGCCCCTATCCACCAGACGATTTTAAGTGTTAAATGCCTT
CCACGAAATGTGCTGGTCAGATCGGGCGGCTCAAGAAGCTGGTGGGGCGA
AAGGGTTTCAGCAACAACCCCGCGGCCGAGATAAACGAAGTCATGAAGCT
CTTCGAGGAGGACATGGCCGGCTTACAGAGGGATATATCCTCGCTGCAGA
G GTGTGTGTGGTGTATATAATCCTAACAGACGTGACTCGTTTGTGAGAGT
ATTGAGCCCTTGCTTCGTCTCTCGGTTCAGTTTTGCGGTTGTGGAGAGCG
AGTGGCCCGCTACCGCTTGTCCTGCAGCCCGGTCACCACTAGCTTTCGCT
GCCCACAGGCTCATGCAAAAGAGGGCAGGGTCGCATCTTCCACTACATTT
TCGACGATGTAGACACCAGCCTTAATAGAAGACACATTTCAGTGTACAAA
ATTCGTTCTTTCTTCCGAAATGGAACGAAACTGAAACACAGGCATGCGGA
CGGCAAGACCAGGGGGAGCCCGCCGATCAACAGCCAGCGGCAGATGCACT
GCGCGTTCATCGTTACGACGCTGCGGAAGAGCGCGCAGGAGCACACCAAG
GCCTTCCGGGACGCGCTATTGCTGCGCGCAGCA GTGAGTATGAGTTACCG
AGACGTAGCTGCCGCCGCAGCAGCAGCAGCAGTAGCAGCACATTTTGTGG
ACGTATCGTGCTTGCCATGCAGCAGTATCCGAGTTGTTGGAGAGCGGGGG
GGTACCATTGCGTCACGGGGGGATTCTGCACGTGGTGTCTCGCCGTGTTT
TGTGGTGTTGCCTCTCAAACGGGACGAGGCGACACTGCCAAAAAATATAC
CTTATCCTGGGCTCGTTTGCTTTTCGCCGACCTACCTCACCGGGCATGGA
TCCAATCCAATCCAATCCAATCCAATCCTTTCCGCACGTACACTAAGGCT
GCTGAATGCTCCAGTGCAGATCTGCACCTGTAGCGGCGGCCGTATGCTGC
ATGCATCGTAGTGCATATTAGAGCAGAAAAACAGCACACCAGCGTACATG
TAGGGCCGCGACAAAAAAAAAGTCATTATCTGAAACAAAATACAACAAAG
TACCCGACCGACCGACCGATAACTATGCGCATCATGTAGGTGGAGAAGCA
GCAAAACGAACGGCAGCGCAAGTTCTCCCACTCCCGTGGCGTGGCTCCCG
CGACCCAGCTAGACTACCCGCTCTTCGGCAACGGTGGCGCCAGCGGGCCG
CGACGCCGGGGCCGCCCGGCCGCCTCTCCTCCCCCACCCCCGCCCGCCGC
CGCCGCCGCGGCCCCCCTGGACGGCGACGACGAAGACAACAAGGGGCACA
AGACGAGCGGAAGAGTTGCGGGGATGGGGTTGGCTACTTCGACCGCCGCG
GCCGTAGTTTCATCCTTGCCGTTCCCTTCCGGGAGGCCGGGGGGAGGGGG
AGGGGTGAGAAGGAGCGGCGAGGGCGTGATGGGTGGCGGCGGCGGCGGTG
GCGGCAGCGGCGGTGGTCAGGGTGGGTCTTGCTGGCCTCAGAAAACCGGG
CCGCCCCCATGGCCAGGGGGGGGTTACAATGGCGGTGCCGGCGGGGGTGG
TTCCGGCTACAGCAATGGTGCGGCTGGGGCGCCGCCGGGTGTCTTGGGAG
CAGGAGGGGCAGAGTACGGGCGTGGTGCTGGGGCGACTTCAGCGCCGGCT
CACAGTAATGGGGGCGGTTTTAGTGGGCATGGAAGGGGGTACGGGCACGG
AGGAGCACCGCCGGGAGTTCCATTACATCCACCGGAACCACCCAGGGCAA
GCAGCGGAGCCACCGGGCTGCGAAAACGACCAG GTGAGATATGAGATGAG
ATGAGGTAAGAAAAACGGCATAAGTTAGAGACGATCTATCGGCGGAAGGT
CGCGTGTGAAGCTCGGGGGGGGGGGCAACGAGTTGGAGCTCTCTTGGGGC
CGCATTGTCGTTGTCTCGCTTTCTGCTTATTGGCGCCGCTGGTTTTCCTC
GTGCAAGTTCAGTTCAGTTGGTTGTTTTCCTTGCCTTCCTCGTCCTCTCT
CCCGGGGTCGATGGCCCCCGTTCTTGCTCTCTATCGCCATATTTTGATTA
ACTCTAGATTACCAGTATTTGGTTCCCTTTTGTTGCCTCCCGACCTTTTT
TTCTTCTTGCGCCGCCGTGGATGTTTGGACCTTGTCTTTCTTGCCTTTTC
TTCTGTCGTGTTCTACATAGAATACCTCCTCCGCACCCTCCTACTAGCCC
CTACTCCCCCCTACAACCCTCTCCTCCTTACTAATTATTTCTACCCCAGG
GCGAGAGGACGGGTGCGACGGGGATGAAGAAGCTCGGCGAGCTGCCTGGC
AGGTGCAGGTCCAAGAAGACTCAAAGGCCAGGGTGGATGAGTCGCACAAG
GTGAGAACGCGAAAACCACCAAACGGCGTACGGCGAATGTGAATTAGGTG
CAATGCCAAGTCCCGTGGAACCGAAGCGAAGCGATGCCATGTCCAGGCAA
TGGGTATTGGGTTGGTTCAGATTTGTCCCGAACAAAAAAAAAGGAAGAAG
TATGCAAAGTGTGTTATACGAAGTAGTTCAGTATCACGGCGAACAAAGAG
TAAGACTACATACATAAATGGATGAACCTATTCAAAGACAGGGCAAGGGC
GGAATGAGTTGATGAAGCTTGTCAAAGACAGGGCGGAAAAACGGACACAC
TTTTTGGGCCAATCGATCACACAAAGCTGGAGCAAAACACCCCGACTGAC
AAAAATGGAGTATTTTATTGCAACACACACGACACACTACTACTCGATCG
AAAACTCCAAACAAAACACGGAAGGTGGAGAAGATGATCGGCGAGCTGGG
GCAGATGTTCAGCCGGTTCTCCACGATGGTGGCGGCGCAGGAGGAGGTGG
TGATGCACATCGAGGACGACGTCGAAGCCGCGCACGCCTTCGCGGAGGAA
GGACAGGCGCACCTCGCCAA GTGAGCCTTCGCCTTCCATTCCGAGTCCAG
TCCAGACCATTCGAGTAGACCAGTCCAGTCGAGTGGAGTAGAACCATTTA
GCACACGATAATGGTAGCGTACGCCTTTGTAGAACCGCAGCATTGTGGTG
GTACACTCATTCCTTTGGGTATGTGTTACAATTTTGAGTTCAGCTGGTGC
TTTTTTGGAGCAAGAGGTGCTTGGTGCTCTTTTTGTGGGGCTTGGCTGAG
TCGCTATACAAGTAGAGAGATCGGCCCGTATTTTCGTGGGGGGTGGGTGT
TCTGTTCTGGGTGCGAAGCAAGGTTCAAGGTTTTTACAGCTCCCCTGCGT
GCTAGTTTGGCCTCAATGCGATGGGTGCTTCCTTTGCTGCCCGATCTAAA
CCCCATTCTCTGGGGTGCTTGTTTTGCCTGTTTTAATCATCTGCAGGTAC
TACCAGATAATGAGCGGCAATCGCGGCATCATCATCAAGGTGTTCATCAT
GCTCATCCTGTTCATCTGGGTATTCCTGGGTCTGATGAGATGA CACCACC
CTGCCATTCGGGGGTACTATTATGACGCTCGGCCAATCCACGAATCGTGC
CTTTGCGAATGGAAGAGATGTTGCAACCATAGCATATCGTAGACGATGGC
ATATTCCTAGTTTTCCACACCACACCGTTACAATTGGGGTTGGAGGGCAG
CGCAGGTACTAGGTTTTTCGAAGGGAGGAGGGGGGGTCTCCTCCGCCCGC
GAACTCAGCTACGTGGTTTTTATACTGTTCTGTTTTTGGTCGGCAGCTGA
GGTTGGAGGCGTATGTGTTGCATAGTCCTGCAACCCCTTCCGAGAGATGC
GCCCCACCACTCTTGGGCTGGGGAACCTCGAGGCAGAGACACTCATGCCG
CCGCCGCTTCGAGTGTGGGTGGACTACAAGCGCGCCGTGTCAGTGGTGTG
TTGCATGCTCTGACAACGGTCGACCTTCTTCCCTAGACCGAGGAAAAAGG
TTACCGTCGTCTCGAGCAACCACCGGAGCACTGAACAGGGTCTGCTTGCA
CTCTGCCCACACTCGAATCGGCCGTTGTGCCGACAGCCAGAGGATGTGTG
AGTGTGACAAACGGGGTTGAAGCCCT ATGTATTGCTGCCGCTGCTGCCGC
TGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCTTTGGATG
CCTTCTTCCCACACCTTGAAGTATTTCGCCCTTGGTTCACTTGGTGGCGT
TACGTTACGTTACGTTACGTGCTAAGGGAGAGACGGAGAGAGACGGCCAC
GTCGATACAACGCGCGGTGGGCGTGTAGAAGCTGTTTCGACACAACAGGG
CGAAAGGGGCCGTATTGTTCGCTCGTGTCAAACCCGTGGTCGATCTGGTG
TCTACCGCGTCGAAGGACGGAGAAAAGACGAACTTTTCGTTGATTCGGAA
GCGTCCCGAGCTACATGTAGAGTTGATGTGTTTCGCACAAGCGAGGGCTT
CGGCAACGAGGGGAAGCAAATGGCGAGAACGAGAACGAGA back to top Coding sequence (CDS) from alignment at C-linearis_contig99:415695..421134-
>mRNA_C-linearis_contig99.17185.1 ID=mRNA_C-linearis_contig99.17185.1|Name=mRNA_C-linearis_contig99.17185.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3006bp|location=Sequence derived from alignment at C-linearis_contig99:415695..421134- (Chordaria linearis ClinC8C monoicous) back to top