mRNA_C-linearis_contig99.17184.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: D8LR18_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR18_ECTSI) HSP 1 Score: 194 bits (494), Expect = 3.150e-50 Identity = 206/586 (35.15%), Postives = 232/586 (39.59%), Query Frame = 1 Query: 55 DAIGWRCARCGHAVPIDNREVHEARCGRAPSPXXXXXXTLAPPQXXXXXXXTPASPSLFDPDEETPTHNVFTPGSPPRDAQTPQQPQXXXXXXXXXXXXXRPWREVNLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERESETTWACNACTYLNDFAVSRCAMCGTRMSPQQRPPDSTYRDTLISDDPDPPSRSGGRCRRQAGAAGDFEAAAEEARCRLLAEASARRGNGTRGGGXXXXXXXXXXXGRDDDGLIDTGGAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGGITDDTGARGGNNTNNDRTEGGRGGRDDEFGAWLRQRRXXXXXXLSLEFVEHSRTGILLGGXXXXXXXXXXELDLDVEESLLLARRMEALNLPDAAAEMRREAMRGTVEGPR----GIVHRRRQPHLHEQEEDGA-----TRPASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRVD 1785
DA W C RCGH VPIDNREVHEA+C R +P Q T + PS FDPD + + NVFTP PP RE P XXXXXXXXXXX E TTWAC ACTYLNDF VSRC MCGTRMSPQQRPPD+TYRDTLI G XXXXXXXXXXX D GL+D S LGG++D+ GA XXXX S EFV + G + ESL+LARR+EAL+LP +AA MRRE GI+ + + H+ A T PASARAIAALP E LTAG+L+HLK+DGRQCCICLEDF G++ RL CLHLYHTVCI+NWLQTSGTCPQCK RVD
Sbjct: 2 DATCWVCQRCGHEVPIDNREVHEAQCRRN-----------SPAQLLSPPPVTGSPPSPFDPDNQPFSRNVFTPAQPPAAEAAA--------------------RESGQPCGFAAAGRGAASXXXXXXXXXXXSTEGEG------------------------------------------------------------ESGDTTTWACAACTYLNDFGVSRCDMCGTRMSPQQRPPDATYRDTLIG--------GGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQGLLDGRTTISGAAAGSAIGAIGGALLSAVQPGARASGVMSSMFQGALMGGMAGAALGGLSDEPGA----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVSSFEFVRGPTARVRRGRDV-----------VSEMESLMLARRLEALSLPASAAAMRREGGXXXXXXXSSIYAGILRQLAEAQNHDAAGGDAXXXXGTSPASARAIAALPGEALTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHTVCIENWLQTSGTCPQCKFRVD 473
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: A0A6H5L176_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L176_9PHAE) HSP 1 Score: 161 bits (407), Expect = 8.310e-38 Identity = 174/377 (46.15%), Postives = 195/377 (51.72%), Query Frame = 1 Query: 655 ESETTWACNACTYLNDFAVSRCAMCGTRMSPQQRPPDSTYRDTLISDDPDPPSRSGGRCRRQAGAAGDFEAAAEEARCRLLAEASARRGNGTRGGGXXXXXXXXXXXGRDDDGLIDTGGAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGGITDDTGARGGNNTNNDRTEGGRGGRDDEFGAWLRQRRXXXXXXLSLEFVEHSRTGILLGGXXXXXXXXXXELDLDVEESLLLARRMEALNLPDAAAEMRREAMRGTVEGPRGIVHRRRQPHLHEQEEDGATRPASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRVD 1785
E+ TTWAC ACTYLNDF VSRC MCGTRMSPQQRPPD+TYRDTLI XXXXXXXXXXX DD GL+D S XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXX LGG++++ GA G + RR S+EFV + G + ESL+LA R++A L A +A G PASARAIAALP ETLTAGSL+HLK+DGRQCCICLE+F G+ RL CLHLYH+VCI+NWLQTSGTCPQCK RVD
Sbjct: 274 ETTTTWACAACTYLNDFGVSRCDMCGTRMSPQQRPPDATYRDTLIGXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDQGLLDGRSTISGAAAGSAIXXXXXXXXXXXQPXXXXXXXXXXXXXXXXXXXXXXAALGGLSNEPGAGGDSXXXXXXXX-----XXXXXXXXXXFRRQWRRQVSSVEFVRGPTARVRRGRDA-----------VSEVESLMLA-RLDARILRRLAEAHNHDAAGGXXXXXXXAS------------------PASARAIAALPGETLTAGSLAHLKDDGRQCCICLEEFEAGERATRLPCLHLYHSVCIENWLQTSGTCPQCKFRVD 606
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: A0A835Z4Y2_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Y2_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 3.500e-13 Identity = 37/79 (46.84%), Postives = 46/79 (58.23%), Query Frame = 1 Query: 1546 DGATRPASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRV 1782
+G S A+ AL + L+A ++ L E R CCICLE+F G VK L+CLH +HT CI LQ CP CKHRV
Sbjct: 71 EGRRSSVSQAALDALTDRVLSAEEVAKLPESQRSCCICLEEFRAGQGVKWLECLHCFHTTCIDAALQRRDECPICKHRV 149
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: UPI00053C58A5 (E3 ubiquitin-protein ligase RING1-like isoform X1 n=4 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C58A5) HSP 1 Score: 82.4 bits (202), Expect = 6.350e-13 Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 1 Query: 1561 PASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRVDL 1788
PA AI A+P +T+ HLK+DG QC +CLE+F G E K L C H+YH CI WL+ +CP C+H V L
Sbjct: 219 PAPESAIEAIPTVKITS---DHLKKDGSQCSVCLEEFQVGGEAKELPCTHIYHNDCIVPWLRLHNSCPVCRHEVPL 291
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: A0A7S1MR62_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MR62_ALECA) HSP 1 Score: 77.4 bits (189), Expect = 7.910e-13 Identity = 39/84 (46.43%), Postives = 49/84 (58.33%), Query Frame = 1 Query: 1540 EEDGATRPASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRVDLA 1791
E+ A+ PA A I ALP L ++ E + C ICLE+FG GD+VK L CLHLYH CI+ WL T +CP CK + A
Sbjct: 73 EQSEASNPAQAADIDALPTRKLAGAD--NVGEQSK-CLICLEEFGEGDDVKTLPCLHLYHQRCIEQWLGTDNSCPVCKTPIGQA 153
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: A0A1Q9F205_SYMMI (E3 ubiquitin-protein ligase RNF12-A n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9F205_SYMMI) HSP 1 Score: 77.4 bits (189), Expect = 1.060e-11 Identity = 33/73 (45.21%), Postives = 43/73 (58.90%), Query Frame = 1 Query: 1564 ASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRV 1782
A R I ALP G + DG +C IC+EDF GDE++ L C HL+H+ CI WLQ + CP C+H+V
Sbjct: 217 ADGRTIQALPTRKFAGGEAA--AADGTRCEICMEDFAEGDELRTLPCFHLFHSKCIDQWLQVNSICPICRHKV 287
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: A0A7S1MQQ6_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MQQ6_ALECA) HSP 1 Score: 73.6 bits (179), Expect = 1.730e-11 Identity = 37/84 (44.05%), Postives = 46/84 (54.76%), Query Frame = 1 Query: 1540 EEDGATRPASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRVDLA 1791
E+ A PA A I ALP L +L E + C ICLE+FG GD+V L CLH YH C++ WL T +CP CK + A
Sbjct: 73 EQSDAGNPAHAADINALPNRKLAGAE--NLGEQSK-CLICLEEFGDGDDVTTLPCLHFYHQRCVEQWLGTDNSCPVCKTPIGQA 153
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: A0A6A2ZT57_HIBSY (Putative Ribosomal protein L34e superfamily protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZT57_HIBSY) HSP 1 Score: 72.8 bits (177), Expect = 3.800e-11 Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 1 Query: 1561 PASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCK 1773
PAS +I A+P+ +KE GR C ICLE+FG +E + + C H++H+ CIQ WLQ G+CP C+
Sbjct: 36 PASKASIEAMPK--------IKVKESGRDCSICLEEFGVDEEAREMPCKHVFHSGCIQKWLQIHGSCPICR 98
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: UPI0018F4222A (RING finger protein 11-like isoform X2 n=1 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F4222A) HSP 1 Score: 70.5 bits (171), Expect = 1.350e-10 Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 1 Query: 1579 IAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRVDLA 1791
I LP+ T G + ++C IC+ DF +GD+++ L C+H+YH CI WL S TCP C VD A
Sbjct: 62 IQHLPKGTFDFGGKDSQNKKIKECVICMMDFDSGDQIRFLPCMHIYHVDCIDEWLMRSFTCPSCMEPVDAA 132
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: UPI00053C47F1 (probable E3 ubiquitin-protein ligase RHC1A isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C47F1) HSP 1 Score: 74.7 bits (182), Expect = 1.630e-10 Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 1 Query: 1561 PASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRVDL 1788
P AI +P +T+ HLK DG QC +C+E+F G E K L C H+YH CI WL+ +CP C+H + +
Sbjct: 212 PVPESAIDTIPTVKITS---EHLKNDGTQCTVCMEEFQVGGEAKELPCKHIYHNDCIVPWLRLHNSCPICRHELPV 284 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17184.1 >prot_C-linearis_contig99.17184.1 ID=prot_C-linearis_contig99.17184.1|Name=mRNA_C-linearis_contig99.17184.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=587bp MDSINGPDAIGWRCARCGHAVPIDNREVHEARCGRAPSPTPTPTPTLAPPback to top mRNA from alignment at C-linearis_contig99:412058..415451+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17184.1 ID=mRNA_C-linearis_contig99.17184.1|Name=mRNA_C-linearis_contig99.17184.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3394bp|location=Sequence derived from alignment at C-linearis_contig99:412058..415451+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:412058..415451+ >mRNA_C-linearis_contig99.17184.1 ID=mRNA_C-linearis_contig99.17184.1|Name=mRNA_C-linearis_contig99.17184.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3522bp|location=Sequence derived from alignment at C-linearis_contig99:412058..415451+ (Chordaria linearis ClinC8C monoicous)back to top |