Homology
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match:
A0A6H5K266_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K266_9PHAE)
HSP 1 Score: 166 bits (421), Expect = 4.910e-49
Identity = 88/111 (79.28%), Postives = 95/111 (85.59%), Query Frame = 3
Query: 33 MLRTFMEEAGITETFPGPAVLSNTPLVLCKRAGCLLKLYDKRVKELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP 365
MLR FMEE GITE FPG AVLS TPLVLC+RAGCLL LYDKR++ LSKER+ARKLK +PAAR +WTGSPEPVRQL+RR LDR CTSDAAVEVLL AV ISGRVL C GGP
Sbjct: 1 MLRAFMEETGITENFPGLAVLSITPLVLCQRAGCLLNLYDKRMRVLSKERIARKLKLVPAARTKWTGSPEPVRQLQRRLLDRCCTSDAAVEVLLRAVDISGRVLDMC-GGP 110
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match:
A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE)
HSP 1 Score: 126 bits (316), Expect = 7.670e-32
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 2
Query: 350 LCGGPGDAVARLLGATCELVTNDVSGRLSPGSKQAPDTHLDASATTFCADFLEDGVQQRPDWVVTSPPYKGALKFVKAALSVAKKGVALK 619
+CGGP DAVAR L TCE+VTNDVS RLS +++APDT LDAS +TF A+FL DG QQ+P+ VV SPPYKGA+KFVKAAL VAK GVALK
Sbjct: 142 MCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALK 231
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match:
A0A6H5JXU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU2_9PHAE)
HSP 1 Score: 122 bits (305), Expect = 1.360e-31
Identity = 67/123 (54.47%), Postives = 81/123 (65.85%), Query Frame = 3
Query: 3 YRQLRPRTASMLRTFMEEAGITETFPG--PAVLSNTPLVLCKRAGCLLKLYDKRVKELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP 365
YRQLRPRT SMLR F+ AG+ E FPG P + LV CKRA C+LK DK + + +R +K KR + A WT +PEP ++RRHLDRYCTS AVE LL+AV +SGRVL C GGP
Sbjct: 25 YRQLRPRTMSMLRAFVRNAGLAEKFPGVMPLGVGIDSLVRCKRAECVLKQNDKHMSDFCHDRARKKQKRNRSEAATWTSAPEPAVHVKRRHLDRYCTSIVAVEALLDAVNVSGRVLDMC-GGP 146
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match:
D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)
HSP 1 Score: 122 bits (305), Expect = 5.550e-31
Identity = 61/90 (67.78%), Postives = 73/90 (81.11%), Query Frame = 2
Query: 350 LCGGPGDAVARLLGATCELVTNDVSGRLSPGSKQAPDTHLDASATTFCADFLEDGVQQRPDWVVTSPPYKGALKFVKAALSVAKKGVALK 619
+CGGPGDA+A LGATC++VTND+S RLSPG PDT+LDAS +F DFL QRPDWV+TSPPYKGAL++VK+ALS+A KGVALK
Sbjct: 106 MCGGPGDAIATRLGATCKVVTNDISTRLSPGGLP-PDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALK 194
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match:
A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)
HSP 1 Score: 116 bits (290), Expect = 5.850e-28
Identity = 65/123 (52.85%), Postives = 85/123 (69.11%), Query Frame = 3
Query: 3 YRQLRPRTASMLRTFMEEAGITETFPG-PAVLSNTPLV-LCKRAGCLLKLYDKRVKELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP 365
+R R RT ++R+F++EAGI + FPG ++ + T L+ LCKRAGCLL+LY K+ S+ERVARK K++P W+ +PEPV +RR LDRYCT AVEVL NAV I+G VL C GGP
Sbjct: 35 FRHTRARTGELVRSFVDEAGIADKFPGFQSIAAGTNLLALCKRAGCLLELYQKQEWARSRERVARKAKQMPRHSRMWSAAPEPVTHDKRRRLDRYCTLPEAVEVLQNAVAIAGCVLDMC-GGP 156
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match:
A0A6H5KJ32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ32_9PHAE)
HSP 1 Score: 113 bits (283), Expect = 8.390e-28
Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 3
Query: 6 RQLRPRTASMLRTFMEEAGITETFPG-PAVLSNTPLV-LCKRAGCLLKLYDKRVKELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVG 359
R R RT ++R+F++EAGI + FPG ++ + T L+ LCKRAGCLL+LY K+ S+ERVARK K++P W+ +PEPV +RR LDRYCT AVEVL NAV I+G VL C G
Sbjct: 91 RHTRARTGELVRSFVDEAGIADKFPGFQSIAAGTNLLALCKRAGCLLELYQKQEWARSRERVARKAKQMPRHSRMWSAAPEPVTHDKRRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGG 210
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match:
A0A6H5KTR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTR5_9PHAE)
HSP 1 Score: 110 bits (274), Expect = 9.210e-27
Identity = 65/136 (47.79%), Postives = 84/136 (61.76%), Query Frame = 3
Query: 3 YRQLRPRTASMLRTFMEEAGITETFPGPAVLSNTP--LVLCKRAGCLLKLYDKRVKELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP----AMRWHGYLE 392
+RQ R RT +LR+F++EAG+ + FPG + P LCKR+GCLL+LY K S+ERVARK K+ P W+ +PEPV +RR DRYCTS AV+ L +AV I+G VL C GGP AM + G E
Sbjct: 42 FRQTRARTGELLRSFVDEAGLADRFPGFQSGAAGPNLFALCKRSGCLLELYKKHEWARSRERVARKAKQTPRHSRTWSAAPEPVTHHKRRRFDRYCTSPEAVDALRDAVAITGCVLDMC-GGPDDAVAMGFGGTCE 176
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match:
A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)
HSP 1 Score: 103 bits (258), Expect = 6.250e-24
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 2
Query: 350 LCGGPGDAVARLLGATCELVTNDVSGRLSPGSKQAPDTHLDASATTFCADFLEDGVQQRPDWVVTSPPYKGALKFVKAALSVAKKGVALK 619
+CGG DAVA L TC+++TNDV RLSP T+LDAS+ +F DFL Q+PDW+VTSPPYKGAL FVKAAL+VAKKGVALK
Sbjct: 94 MCGGTDDAVAIRLRDTCQVLTNDVGPRLSPA------TNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALK 177
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match:
A0A6H5KNW7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW7_9PHAE)
HSP 1 Score: 99.8 bits (247), Expect = 7.450e-23
Identity = 61/127 (48.03%), Postives = 75/127 (59.06%), Query Frame = 3
Query: 3 YRQLRPRTASMLRTFMEEAGITETFPG--PAVLSNTPLVLCKRAGCLLKLYDKRV----KELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP 365
+R +R RT+S +R F++E GI F L LVLC+R CLL+LY K K+ SK+R ARK R P W G+PEP L+RR LDRYCTS AV+ LL AV I+G VL C GGP
Sbjct: 25 FRHMRARTSSQVRDFVDEVGIANQFTALNEGNLGVITLVLCRRPACLLQLYKKHEQRASKDRSKDRRARKAARTPRHAKGWVGAPEPQTHLKRRWLDRYCTSPEAVDALLGAVGITGCVLDMC-GGP 150
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match:
A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE)
HSP 1 Score: 99.8 bits (247), Expect = 2.610e-22
Identity = 64/125 (51.20%), Postives = 77/125 (61.60%), Query Frame = 3
Query: 12 LRPRTASMLRTFMEEAGITETFPG--PAVLSNTPLVLCKRAGCLLKLYDKRV----KELSKERVARKLKRLPA-ARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP 365
+RPRT+S +R F++E GI FP L + L LCKR+GCLL+LY K KE SK+R ARK + P A WT PEP L+RR LDRYCTS AVE LL AV I+G +L C GGP
Sbjct: 1 MRPRTSSQVRAFVDEIGIANQFPALDEGGLGASTLTLCKRSGCLLQLYKKHEQRMSKERSKDRRARKAAQTPRHATGMWT-VPEPQTHLKRRWLDRYCTSPEAVEALLGAVSITGCILDVC-GGP 123
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 4.91e-49 / Id = 79.28 Expect = 7.67e-32 / Id = 71.11 Expect = 1.36e-31 / Id = 54.47 Expect = 5.55e-31 / Id = 67.78 Expect = 5.85e-28 / Id = 52.85 Expect = 8.39e-28 / Id = 52.50 Expect = 9.21e-27 / Id = 47.79 Expect = 6.25e-24 / Id = 62.22 Expect = 7.45e-23 / Id = 48.03 Expect = 2.61e-22 / Id = 51.20 Sequence A0A6H5K266_9PHAE A0A6H5KHQ4_9PHAE A0A6H5JXU2_9PHAE D7FJU4_ECTSI A0A6H5JUK3_9PHAE A0A6H5KJ32_9PHAE A0A6H5KTR5_9PHAE A0A6H5K049_9PHAE A0A6H5KNW7_9PHAE A0A6H5KD58_9PHAE
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17170.1
>prot_C-linearis_contig99.17170.1 ID=prot_C-linearis_contig99.17170.1|Name=mRNA_C-linearis_contig99.17170.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=126bp
MLRTFMEEAGITETFPGPAVLSNTPLVLCKRAGCLLKLYDKRVKELSKER VARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPIS GRVLVFCVGGPAMRWHGYLERRVSS* back to top mRNA from alignment at C-linearis_contig99:334579..335437-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17170.1 ID=mRNA_C-linearis_contig99.17170.1|Name=mRNA_C-linearis_contig99.17170.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=859bp|location=Sequence derived from alignment at C-linearis_contig99:334579..335437- (Chordaria linearis ClinC8C monoicous)GGTATCGACAGCTACGACCGCGGACGGCCAGC ATGCTGCGGACGTTCATG
GAGGAAGCGGGCATCACGGAAACTTTCCCTGGCCCAGCAGTGCTCTCGAA
CACTCCCTTGGTACTTTGCAAACGTGCTGGTTGCCTGTTGAAGCTGTACG
ACAAGCGCGTGAAAGAACTCAGCAAGGAGCGCGTTGCACGCAAACTGAAA
CGTTTGCCTGCGGCCAGAGCAAGGTGGACCGGTTCTCCCGAGCCGGTGCG
CCAGCTTCGACGCCGCCATCTGGACCGCTACTGTACCTCCGATGCGGCGG
TTGAGGTGCTGCTTAATGCTGTCCCCATCAGCGGGAGAGTATTGGTTTTC
TGTGTGGGGGGCCCGGCGATGCGGTGGCACGGCTACTTGGAGCGACGTGT
GAGCTCGTAA CGAACGACGTCAGCGGCAG GTGATTTATTTGTTGTAGTGG
GTAAAGAGTAGTGGCTAGTGGCTCGTGGTTGCGACTGTAGAGAAGGGAGC
GTGGAAGTCGTAACGTTACACAGCACCGTTGGGTCTGTATGGCACTGATA
TTGCCGACTCCCCTTCTCCCACCCCCTGCCCACTTTGTACATGCCGATAA
TGTATCAAGCGCCTTCGTTTCCGTGCCCTCCCCCCCCCCCTTGCACCTCG
TTACTCCGGGATTTTCAGGTTGTCCCCCGGCTCTAAGCAGGCACCGGACA
CTCACCTAGATGCAAGCGCGACGACATTTTGTGCCGACTTCCTGGAGGAC
GGCGTTCAACAGCGCCCTGACTGGGTCGTGACGAGCCCCCCCTACAAGGG
AGCTCTGAAGTTTGTCAAGGCGGCGCTGTCGGTAGCGAAAAAAGGCGTGG
CGCTAAAGC back to top Coding sequence (CDS) from alignment at C-linearis_contig99:334579..335437-
>mRNA_C-linearis_contig99.17170.1 ID=mRNA_C-linearis_contig99.17170.1|Name=mRNA_C-linearis_contig99.17170.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at C-linearis_contig99:334579..335437- (Chordaria linearis ClinC8C monoicous) ATGCTGCGGACGTTCATGGAGGAAGCGGGCATCACGGAAACTTTCCCTGG CCCAGCAGTGCTCTCGAACACTCCCTTGGTACTTTGCAAACGTGCTGGTT GCCTGTTGAAGCTGTACGACAAGCGCGTGAAAGAACTCAGCAAGGAGCGC GTTGCACGCAAACTGAAACGTTTGCCTGCGGCCAGAGCAAGGTGGACCGG TTCTCCCGAGCCGGTGCGCCAGCTTCGACGCCGCCATCTGGACCGCTACT GTACCTCCGATGCGGCGGTTGAGGTGCTGCTTAATGCTGTCCCCATCAGC GGGAGAGTATTGGTTTTCTGTGTGGGGGGCCCGGCGATGCGGTGGCACGG CTACTTGGAGCGACGTGTGAGCTCGTAAATGCTGCGGACGTTCATGGAGG AAGCGGGCATCACGGAAACTTTCCCTGGCCCAGCAGTGCTCTCGAACACT CCCTTGGTACTTTGCAAACGTGCTGGTTGCCTGTTGAAGCTGTACGACAA GCGCGTGAAAGAACTCAGCAAGGAGCGCGTTGCACGCAAACTGAAACGTT TGCCTGCGGCCAGAGCAAGGTGGACCGGTTCTCCCGAGCCGGTGCGCCAG CTTCGACGCCGCCATCTGGACCGCTACTGTACCTCCGATGCGGCGGTTGA GGTGCTGCTTAATGCTGTCCCCATCAGCGGGAGAGTATTGGTTTTCTGTG TGGGGGGCCCGGCGATGCGGTGGCACGGCTACTTGGAGCGACGTGTGAGC TCGTAA back to top