mRNA_C-linearis_contig99.17170.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5K266_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K266_9PHAE) HSP 1 Score: 166 bits (421), Expect = 4.910e-49 Identity = 88/111 (79.28%), Postives = 95/111 (85.59%), Query Frame = 3 Query: 33 MLRTFMEEAGITETFPGPAVLSNTPLVLCKRAGCLLKLYDKRVKELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP 365 MLR FMEE GITE FPG AVLS TPLVLC+RAGCLL LYDKR++ LSKER+ARKLK +PAAR +WTGSPEPVRQL+RR LDR CTSDAAVEVLL AV ISGRVL C GGP Sbjct: 1 MLRAFMEETGITENFPGLAVLSITPLVLCQRAGCLLNLYDKRMRVLSKERIARKLKLVPAARTKWTGSPEPVRQLQRRLLDRCCTSDAAVEVLLRAVDISGRVLDMC-GGP 110
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE) HSP 1 Score: 126 bits (316), Expect = 7.670e-32 Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 2 Query: 350 LCGGPGDAVARLLGATCELVTNDVSGRLSPGSKQAPDTHLDASATTFCADFLEDGVQQRPDWVVTSPPYKGALKFVKAALSVAKKGVALK 619 +CGGP DAVAR L TCE+VTNDVS RLS +++APDT LDAS +TF A+FL DG QQ+P+ VV SPPYKGA+KFVKAAL VAK GVALK Sbjct: 142 MCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALK 231
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5JXU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU2_9PHAE) HSP 1 Score: 122 bits (305), Expect = 1.360e-31 Identity = 67/123 (54.47%), Postives = 81/123 (65.85%), Query Frame = 3 Query: 3 YRQLRPRTASMLRTFMEEAGITETFPG--PAVLSNTPLVLCKRAGCLLKLYDKRVKELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP 365 YRQLRPRT SMLR F+ AG+ E FPG P + LV CKRA C+LK DK + + +R +K KR + A WT +PEP ++RRHLDRYCTS AVE LL+AV +SGRVL C GGP Sbjct: 25 YRQLRPRTMSMLRAFVRNAGLAEKFPGVMPLGVGIDSLVRCKRAECVLKQNDKHMSDFCHDRARKKQKRNRSEAATWTSAPEPAVHVKRRHLDRYCTSIVAVEALLDAVNVSGRVLDMC-GGP 146
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 122 bits (305), Expect = 5.550e-31 Identity = 61/90 (67.78%), Postives = 73/90 (81.11%), Query Frame = 2 Query: 350 LCGGPGDAVARLLGATCELVTNDVSGRLSPGSKQAPDTHLDASATTFCADFLEDGVQQRPDWVVTSPPYKGALKFVKAALSVAKKGVALK 619 +CGGPGDA+A LGATC++VTND+S RLSPG PDT+LDAS +F DFL QRPDWV+TSPPYKGAL++VK+ALS+A KGVALK Sbjct: 106 MCGGPGDAIATRLGATCKVVTNDISTRLSPGGLP-PDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALK 194
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE) HSP 1 Score: 116 bits (290), Expect = 5.850e-28 Identity = 65/123 (52.85%), Postives = 85/123 (69.11%), Query Frame = 3 Query: 3 YRQLRPRTASMLRTFMEEAGITETFPG-PAVLSNTPLV-LCKRAGCLLKLYDKRVKELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP 365 +R R RT ++R+F++EAGI + FPG ++ + T L+ LCKRAGCLL+LY K+ S+ERVARK K++P W+ +PEPV +RR LDRYCT AVEVL NAV I+G VL C GGP Sbjct: 35 FRHTRARTGELVRSFVDEAGIADKFPGFQSIAAGTNLLALCKRAGCLLELYQKQEWARSRERVARKAKQMPRHSRMWSAAPEPVTHDKRRRLDRYCTLPEAVEVLQNAVAIAGCVLDMC-GGP 156
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5KJ32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ32_9PHAE) HSP 1 Score: 113 bits (283), Expect = 8.390e-28 Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 3 Query: 6 RQLRPRTASMLRTFMEEAGITETFPG-PAVLSNTPLV-LCKRAGCLLKLYDKRVKELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVG 359 R R RT ++R+F++EAGI + FPG ++ + T L+ LCKRAGCLL+LY K+ S+ERVARK K++P W+ +PEPV +RR LDRYCT AVEVL NAV I+G VL C G Sbjct: 91 RHTRARTGELVRSFVDEAGIADKFPGFQSIAAGTNLLALCKRAGCLLELYQKQEWARSRERVARKAKQMPRHSRMWSAAPEPVTHDKRRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGG 210
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5KTR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTR5_9PHAE) HSP 1 Score: 110 bits (274), Expect = 9.210e-27 Identity = 65/136 (47.79%), Postives = 84/136 (61.76%), Query Frame = 3 Query: 3 YRQLRPRTASMLRTFMEEAGITETFPGPAVLSNTP--LVLCKRAGCLLKLYDKRVKELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP----AMRWHGYLE 392 +RQ R RT +LR+F++EAG+ + FPG + P LCKR+GCLL+LY K S+ERVARK K+ P W+ +PEPV +RR DRYCTS AV+ L +AV I+G VL C GGP AM + G E Sbjct: 42 FRQTRARTGELLRSFVDEAGLADRFPGFQSGAAGPNLFALCKRSGCLLELYKKHEWARSRERVARKAKQTPRHSRTWSAAPEPVTHHKRRRFDRYCTSPEAVDALRDAVAITGCVLDMC-GGPDDAVAMGFGGTCE 176
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE) HSP 1 Score: 103 bits (258), Expect = 6.250e-24 Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 2 Query: 350 LCGGPGDAVARLLGATCELVTNDVSGRLSPGSKQAPDTHLDASATTFCADFLEDGVQQRPDWVVTSPPYKGALKFVKAALSVAKKGVALK 619 +CGG DAVA L TC+++TNDV RLSP T+LDAS+ +F DFL Q+PDW+VTSPPYKGAL FVKAAL+VAKKGVALK Sbjct: 94 MCGGTDDAVAIRLRDTCQVLTNDVGPRLSPA------TNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALK 177
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5KNW7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW7_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 7.450e-23 Identity = 61/127 (48.03%), Postives = 75/127 (59.06%), Query Frame = 3 Query: 3 YRQLRPRTASMLRTFMEEAGITETFPG--PAVLSNTPLVLCKRAGCLLKLYDKRV----KELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP 365 +R +R RT+S +R F++E GI F L LVLC+R CLL+LY K K+ SK+R ARK R P W G+PEP L+RR LDRYCTS AV+ LL AV I+G VL C GGP Sbjct: 25 FRHMRARTSSQVRDFVDEVGIANQFTALNEGNLGVITLVLCRRPACLLQLYKKHEQRASKDRSKDRRARKAARTPRHAKGWVGAPEPQTHLKRRWLDRYCTSPEAVDALLGAVGITGCVLDMC-GGP 150
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 2.610e-22 Identity = 64/125 (51.20%), Postives = 77/125 (61.60%), Query Frame = 3 Query: 12 LRPRTASMLRTFMEEAGITETFPG--PAVLSNTPLVLCKRAGCLLKLYDKRV----KELSKERVARKLKRLPA-ARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP 365 +RPRT+S +R F++E GI FP L + L LCKR+GCLL+LY K KE SK+R ARK + P A WT PEP L+RR LDRYCTS AVE LL AV I+G +L C GGP Sbjct: 1 MRPRTSSQVRAFVDEIGIANQFPALDEGGLGASTLTLCKRSGCLLQLYKKHEQRMSKERSKDRRARKAAQTPRHATGMWT-VPEPQTHLKRRWLDRYCTSPEAVEALLGAVSITGCILDVC-GGP 123 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17170.1 >prot_C-linearis_contig99.17170.1 ID=prot_C-linearis_contig99.17170.1|Name=mRNA_C-linearis_contig99.17170.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=126bp MLRTFMEEAGITETFPGPAVLSNTPLVLCKRAGCLLKLYDKRVKELSKERback to top mRNA from alignment at C-linearis_contig99:334579..335437- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17170.1 ID=mRNA_C-linearis_contig99.17170.1|Name=mRNA_C-linearis_contig99.17170.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=859bp|location=Sequence derived from alignment at C-linearis_contig99:334579..335437- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:334579..335437- >mRNA_C-linearis_contig99.17170.1 ID=mRNA_C-linearis_contig99.17170.1|Name=mRNA_C-linearis_contig99.17170.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at C-linearis_contig99:334579..335437- (Chordaria linearis ClinC8C monoicous)back to top |