mRNA_C-linearis_contig99.17165.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig99.17165.1 vs. uniprot
Match: A0A6H5KZF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF3_9PHAE) HSP 1 Score: 524 bits (1349), Expect = 1.690e-181 Identity = 299/435 (68.74%), Postives = 337/435 (77.47%), Query Frame = 2 Query: 143 MVSARQR-TKVAALSLAAASLGSKH-AVDAFYAVT----SATPLAFAPLQAQPWLAPSLATRSSADPLSATERPHRLHVRGRA----GLESSSSWRSEQPAGVSACCRAWGGALGSR---RGSRLS----MAVVEDSGETSTSASGAGAEAAVEPFMPAAIQDALPEGVQKELSEINSDPAKLTFALNAAVIFLFAAFAAYKVATVDGDIARGWTWYEVLLRVPGDNFYRYEATVSESPIPTKALTSCVAYGLGDFTAQLFTGKNLETIDLKRTARSATAGLLVHGPLCHFWIELMQTYLDFDGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGLPREEVWGQVKSTAWPALTSSWRFWPLIHCCSFSNAIPKDLKLLFIDCMEIIWVTILSSVANGDRQADSGEDGEMVPALAAAG----GEEGGSLGASP 1384
MV RQR T+ AA +L AAS+ +H A +AF + + ++ LAFAP Q WLA A+ SA S+T R R+ VR R G +++ E P+ AWG + SR RGS S MA VED+G+ S+S G + VEPFMPA +Q ALP QK+LS+IN DPAKLTF +NAAV+FLFAAFAA+K+ATVDGDIARGWTWYEVLLRVPGDNFYRYEATVSESPI TKALTSCVAYGLGDFTAQLFTGK LE +DL RTARSATAGLL+HGPLCHFWIELMQTYLDFDGAWWNF+PKVIADQTVWSVFLNAAYSTMIMSLQGLP+EEVWG+VKS AWPALTSSWRFWPLIHCCSFSNAIPKDLKLLFIDCMEIIWVTILS+VANGDRQAD E GEMVPA+A+ G+EGG LG +P
Sbjct: 1 MVPTRQRATRAAAAALIAASICCRHTAAEAFTSSSRSRGASNHLAFAPAHGQSWLAQPRASHQSA--ASSTGRGRRIDVRERRSHGYGPGAAAHSVFELPS-------AWGRSARSRQRGRGSSTSKLSMMASVEDAGDASSSLEG---DEEVEPFMPAPLQGALPAEWQKKLSQINKDPAKLTFFMNAAVVFLFAAFAAFKLATVDGDIARGWTWYEVLLRVPGDNFYRYEATVSESPIVTKALTSCVAYGLGDFTAQLFTGKTLENMDLMRTARSATAGLLIHGPLCHFWIELMQTYLDFDGAWWNFIPKVIADQTVWSVFLNAAYSTMIMSLQGLPKEEVWGEVKSKAWPALTSSWRFWPLIHCCSFSNAIPKDLKLLFIDCMEIIWVTILSTVANGDRQADPAE-GEMVPAMASGSTMPKGDEGG-LGGTP 421
BLAST of mRNA_C-linearis_contig99.17165.1 vs. uniprot
Match: D7G7V0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7V0_ECTSI) HSP 1 Score: 505 bits (1300), Expect = 6.270e-176 Identity = 254/305 (83.28%), Postives = 274/305 (89.84%), Query Frame = 2 Query: 482 MAVVEDSGETSTSASGAGAEAAVEPFMPAAIQDALPEGVQKELSEINSDPAKLTFALNAAVIFLFAAFAAYKVATVDGDIARGWTWYEVLLRVPGDNFYRYEATVSESPIPTKALTSCVAYGLGDFTAQLFTGKNLETIDLKRTARSATAGLLVHGPLCHFWIELMQTYLDFDGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGLPREEVWGQVKSTAWPALTSSWRFWPLIHCCSFSNAIPKDLKLLFIDCMEIIWVTILSSVANGDRQADSGEDGEMVPALAAAG----GEEGGSLGASP 1384
MA VED+GE S+S G + VEPFMPA +QDALP QK+LS+IN+DPAKLTF LNAAV+FLFAAFAA+K+ATVDGDIARGWTWYEVLLRVPGDNFYRYEATVSESPI TKA TSCVAYGLGDFTAQLFTGK LE +DL RTARSATAGLL+HGPLCHFWIELMQTYLDFDGAWWNF+PKVIADQTVWSVFLNAAYSTMIMSLQGLP+EEVWG+VKS AWPALTSSWRFWPLIHCCSFSNAIPKDLKLLFIDCMEIIWVTILS+VANGDRQAD E GEMVPA+A+ G+EGG LG +P
Sbjct: 2 MAAVEDAGEASSSLKG---DEEVEPFMPAPLQDALPAEWQKKLSQINNDPAKLTFFLNAAVVFLFAAFAAFKLATVDGDIARGWTWYEVLLRVPGDNFYRYEATVSESPIVTKAFTSCVAYGLGDFTAQLFTGKTLEDMDLMRTARSATAGLLIHGPLCHFWIELMQTYLDFDGAWWNFIPKVIADQTVWSVFLNAAYSTMIMSLQGLPKEEVWGEVKSKAWPALTSSWRFWPLIHCCSFSNAIPKDLKLLFIDCMEIIWVTILSTVANGDRQADPAE-GEMVPAMASGSAMPKGDEGG-LGGAP 301
BLAST of mRNA_C-linearis_contig99.17165.1 vs. uniprot
Match: A0A836CBY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBY7_9STRA) HSP 1 Score: 308 bits (788), Expect = 8.150e-98 Identity = 145/231 (62.77%), Postives = 178/231 (77.06%), Query Frame = 2 Query: 614 EINSDPAKLTFALNAAVIFLFAAFAAYKVATVDGDIARGWTWYEVLLRVPGDNFYRYEATVSESPIPTKALTSCVAYGLGDFTAQLFTGKNLETIDLKRTARSATAGLLVHGPLCHFWIELMQTYLDFDGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGLPR-EEVWGQVKSTAWPALTSSWRFWPLIHCCSFSNAIPKDLKLLFIDCMEIIWVTILSSVANGDRQA 1303
+ +SDP + LN V+ A YKV TVD D++RGWT +E++LRVP DN + YE++V+ + +PTKA TS VAYG+GDF AQ G+ LETIDLKRTARSA AGL VHGP+CHFWIE MQ LDF+GAWWNF+PKV+ADQTV+S+ LNAAY++ ++ L G + E+W VK+T PA+TSSWRFWPLIHC SFS IPKD KLLFID MEIIWVTILSSVAN D++A
Sbjct: 114 DFSSDPKRRNAVLNLLVVGALVGGALYKVVTVDADLSRGWTIWEIILRVPSDNLWSYESSVTHNAVPTKAATSMVAYGIGDFLAQCLRGETLETIDLKRTARSAAAGLFVHGPMCHFWIEWMQANLDFNGAWWNFLPKVVADQTVYSLVLNAAYTSFVIGLSGEKKPSEIWDYVKTTCVPAITSSWRFWPLIHCLSFSTLIPKDFKLLFIDLMEIIWVTILSSVANKDQEA 344
BLAST of mRNA_C-linearis_contig99.17165.1 vs. uniprot
Match: A0A7S0PIM0_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0PIM0_MICPS) HSP 1 Score: 260 bits (665), Expect = 1.970e-78 Identity = 118/235 (50.21%), Postives = 165/235 (70.21%), Query Frame = 2 Query: 596 VQKELSEINSDPAKLTFALNAAVIFLFAAFAAYKVATVDGDIARGWTWYEVLLRVPGDNFYRYEATVSESPIPTKALTSCVAYGLGDFTAQLFTGKNLETIDLKRTARSATAGLLVHGPLCHFWIELMQTYLDFDGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGLPREEVWGQVKSTAWPALTSSWRFWPLIHCCSFSNAIPKDLKLLFIDCMEIIWVTILSSVANGDRQ 1300
V K I+ + ++ ALN ++ A A +++ VD DI++GWT +E+L +P DN Y+ +V ++P+PTKALTS VAY LGDFT QL GK + T+DLKR+ RS AG L+HGPLCH+W++ + L FDGA W KVIADQT WS+FLN+AY+T IMSLQG+ E + G++++T W A+T+ WRFWP +H +FS IP+D KLLF+DC+E++WVTILS+ N D +
Sbjct: 89 VDKAKRWIDDNSVEVNAALNVLIVGSVAFGAVFQIVEVDSDISKGWTAWEILRNIPRDNLEAYQQSVFDNPLPTKALTSGVAYTLGDFTCQLSQGKKITTVDLKRSLRSGIAGFLIHGPLCHYWLQWTEENLSFDGALWAIPVKVIADQTAWSLFLNSAYTTCIMSLQGMGPERIKGEIQATWWNAITAGWRFWPFVHTLTFSPIIPQDFKLLFVDCVEVVWVTILSAAVNRDSE 323
BLAST of mRNA_C-linearis_contig99.17165.1 vs. uniprot
Match: C1N0U7_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N0U7_MICPC) HSP 1 Score: 256 bits (653), Expect = 9.540e-77 Identity = 114/222 (51.35%), Postives = 156/222 (70.27%), Query Frame = 2 Query: 635 KLTFALNAAVIFLFAAFAAYKVATVDGDIARGWTWYEVLLRVPGDNFYRYEATVSESPIPTKALTSCVAYGLGDFTAQLFTGKNLETIDLKRTARSATAGLLVHGPLCHFWIELMQTYLDFDGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGLPREEVWGQVKSTAWPALTSSWRFWPLIHCCSFSNAIPKDLKLLFIDCMEIIWVTILSSVANGDRQ 1300
K+ LN A++ A A + + VD DI+ GWTWYEVL +P DN Y++ V P+P KA+TS VAY LGDFT QL GK +ET+DLKR+ARS AG L+HGPLCH+W+ + L FDGAW+ K+IADQT WS+FLN+AY+T IMSLQG + ++++T + A+++ W+FWP +H +FS+ IP+D KLLF+DC+E+IWVTILS+ N D +
Sbjct: 99 KIDALLNIAIVGSVAGGAVFGIVEVDSDISTGWTWYEVLRNIPQDNLAAYQSAVFAHPLPVKAMTSGVAYTLGDFTCQLSQGKTIETVDLKRSARSGVAGFLIHGPLCHYWLMWTEANLSFDGAWYGTPVKIIADQTAWSLFLNSAYTTCIMSLQGFGPRRIKNEIQATWYNAISAGWKFWPFVHAFTFSSIIPQDFKLLFVDCVEVIWVTILSAAVNRDAE 320
BLAST of mRNA_C-linearis_contig99.17165.1 vs. uniprot
Match: A0A7S0SAT7_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SAT7_9CHLO) HSP 1 Score: 251 bits (641), Expect = 5.150e-75 Identity = 116/237 (48.95%), Postives = 161/237 (67.93%), Query Frame = 2 Query: 587 PEGVQKELSEINSDPA-KLTFALNAAVIFLFAAFAAYKVATVDGDIARGWTWYEVLLRVPGDNFYRYEATVSESPIPTKALTSCVAYGLGDFTAQLFTGKNLETIDLKRTARSATAGLLVHGPLCHFWIELMQTYLDFDGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGLPREEVWGQVKSTAWPALTSSWRFWPLIHCCSFSNAIPKDLKLLFIDCMEIIWVTILSSVANGD 1294
PE V+ + + + A +++ +N A++ A + +++ VD DI+ GWTWYE+L +P DN Y+ V PIP KALTS VAY LGDFT QL GK+L T+DLKR+ RS AG L+HGPLCH+W++ L F GAWW KV+ADQTVWS+FLN AY+T IMSLQG+ + ++ +T + A+++ WRFWP +H +FS IP+D KLLF+DC+E++WVTILS+ N D
Sbjct: 96 PESVKAKFNAFFEENALQISAFVNIAIVGSVAFGSFFRIVEVDSDISTGWTWYEILRNIPEDNLNAYQQAVFAHPIPVKALTSGVAYTLGDFTCQLSQGKSLPTVDLKRSLRSGVAGFLIHGPLCHYWLQWTDLNLSFGGAWWAIPVKVLADQTVWSLFLNTAYTTCIMSLQGMRPANIKREIDATWYNAISAGWRFWPFVHLLTFSPIIPQDFKLLFVDCVEVVWVTILSAAVNRD 332
BLAST of mRNA_C-linearis_contig99.17165.1 vs. uniprot
Match: A0A7R9W0S2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W0S2_9STRA) HSP 1 Score: 247 bits (631), Expect = 1.800e-73 Identity = 137/281 (48.75%), Postives = 177/281 (62.99%), Query Frame = 2 Query: 626 DPAKLT------FALNAAVIFLFAAFAAYKVA-TVDGDIARGWTW---------------YEVLLRVPGDNFYRYEATVSESPIPTKALTSCVAYGLGDFTAQLFTGKNLETIDLKRTARSATAGLLVHGPLCHFWIELMQTYLDFDGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGLPREEVWGQVKSTAWPALTSSWRFWPLIHCCSFSNAIPKDLKLLFIDCMEIIWVTILSSVANGDRQADSGEDG-EMVPALAAAGGEEGGSLGASPAVVLQ 1399
DPA+ T F +N+A++ A Y++ T G +A W + ++L R+P D ++YEA V +PI KA TS VAYGLGDF +Q++ GK L T+DL R RS AG LVHGPLCHFW+ M+TYLDFDGAWW KV AD TVWS+FLNAAYST+I +L G ++V V++T WPAL S+WRFWP +H SFS+A+P DLKLL++D ME+IWVTILS VAN D+ A ED E V L A EEG +PA+ ++
Sbjct: 95 DPAERTKNIDDIFYVNSAIVSFLVLSAVYQLTHTHVGALAALWEYDLGPHPADMTKLTVAVDLLARLPFDLVHKYEALVPTNPIFYKACTSGVAYGLGDFISQVYQGKTLSTLDLPRPFRSGAAGFLVHGPLCHFWLLFMETYLDFDGAWWATGIKVTADLTVWSIFLNAAYSTVIGTLAGRSPKDVLTDVRATQWPALRSAWRFWPFVHTVSFSHAVPLDLKLLWVDFMEVIWVTILSKVANEDKNAKLAEDEVERVNLLETAAVEEGAVPEVNPALEIE 375
BLAST of mRNA_C-linearis_contig99.17165.1 vs. uniprot
Match: A0A061RIB7_9CHLO (Protein Mpv17 (Fragment) n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RIB7_9CHLO) HSP 1 Score: 246 bits (629), Expect = 2.620e-73 Identity = 118/217 (54.38%), Postives = 149/217 (68.66%), Query Frame = 2 Query: 638 LTFALNAAVIFLFAAFAAYKVATVDGDIARGWTWYEVLLRVPGDNFYRYEATVSESPIPTKALTSCVAYGLGDFTAQLFTGKNLETIDLKRTARSATAGLLVHGPLCHFWIELMQTYLDFDGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGLPREEVWGQVKSTAWPALTSSWRFWPLIHCCSFSNAIPKDLKLLFIDCMEIIWVTILSSVAN 1288
+T A+N V+ L A A YK VD D ARGWT E +LR D+F Y+ + S P TKA TS VAY LGDF AQ F G+ + T+DLKR+ RS AG +HGPLCH WIE M+ +L F GAW++ KVIADQTVWS+FLN Y++ I++LQG ++ +V+ T WPAL+S WRFWP +H SFS +P +LKLLFID MEI+WVTIL+SV N
Sbjct: 99 ITAAINGTVVALIVAGATYKAVEVDLDYARGWTLMEFMLRTARDDFVMYQHSASLHPFITKACTSGVAYSLGDFAAQTFQGRTVFTVDLKRSLRSGIAGFFIHGPLCHLWIEWMEAHLSFGGAWYSTFAKVIADQTVWSIFLNTMYTSTILALQGTRPPKIAEEVRLTWWPALSSGWRFWPFVHTVSFSPYVPAELKLLFIDTMEIVWVTILASVVN 315
BLAST of mRNA_C-linearis_contig99.17165.1 vs. uniprot
Match: A0A7S2B582_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B582_9STRA) HSP 1 Score: 245 bits (626), Expect = 6.710e-73 Identity = 109/191 (57.07%), Postives = 147/191 (76.96%), Query Frame = 2 Query: 746 VLLRVPGDNFYRYEATVSESPIPTKALTSCVAYGLGDFTAQLFTGKNLETIDLKRTARSATAGLLVHGPLCHFWIELMQTYLDFDGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGLPREEVWGQVKSTAWPALTSSWRFWPLIHCCSFSNAIPKDLKLLFIDCMEIIWVTILSSVANGDRQADSGED 1318
+LLR+P D ++YEA V +P+ KA TS VAY +GDF +Q++ G+ L+T+DL R+ARS TAG + HGPLCH+W++ M+TYLDF+GAWW KV+ADQTVWS++LNA YS +I SL ++VW VK+T+WPAL +SWRFWP +HC SFS+A+P DLKLL++D MEI+WVT+LS VAN D+ A+ D
Sbjct: 132 LLLRLPSDLIHQYEALVPTNPVFYKACTSGVAYTIGDFVSQVYQGRTLKTLDLARSARSGTAGFVGHGPLCHYWMQFMETYLDFNGAWWGTGVKVLADQTVWSIYLNAMYSFLIGSLALRNPKDVWQDVKATSWPALRTSWRFWPFVHCISFSHAVPLDLKLLWVDVMEIVWVTLLSKVANDDKDANMASD 322
BLAST of mRNA_C-linearis_contig99.17165.1 vs. uniprot
Match: F0Y502_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y502_AURAN) HSP 1 Score: 230 bits (587), Expect = 5.140e-70 Identity = 109/195 (55.90%), Postives = 141/195 (72.31%), Query Frame = 2 Query: 734 TWYEVLLRVPGDNFYRYEATVSESPIPTKALTSCVAYGLGDFTAQLFTGKNLETIDLKRTARSATAGLLVHGPLCHFWIELMQTYLDFDGAWWNFVPKVIADQTVWSVFLNAAYSTMIMSLQGLPREEVWGQVKSTAWPALTSSWRFWPLIHCCSFSNAIPKDLKLLFIDCMEIIWVTILSSVANGDRQADSGED 1318
T ++L R+P D+ + YEA V +PI KA TS VAY LGDF +Q++ G+NL+++DL R+ARS AG + HGPLCHFW+ M+ +LDFDGAW+ KV ADQTVWS++LNA YS +I S +VW VK+T+WPAL SSWRFWP +H SFS+ +P DLKLL++D MEI+WVTILS VAN D+ A ED
Sbjct: 1 TSLDLLARLPMDSIHSYEALVPTNPIFYKACTSGVAYTLGDFVSQIYQGRNLKSVDLARSARSGAAGFVGHGPLCHFWMVWMEAHLDFDGAWYGTGFKVFADQTVWSLYLNAMYSFLIGSFALRNPRDVWEDVKATSWPALRSSWRFWPFVHTISFSHLVPLDLKLLWVDAMEIVWVTILSKVANDDKVAKLDED 195 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17165.1 >prot_C-linearis_contig99.17165.1 ID=prot_C-linearis_contig99.17165.1|Name=mRNA_C-linearis_contig99.17165.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=438bp MVSARQRTKVAALSLAAASLGSKHAVDAFYAVTSATPLAFAPLQAQPWLAback to top mRNA from alignment at C-linearis_contig99:272255..278431- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17165.1 ID=mRNA_C-linearis_contig99.17165.1|Name=mRNA_C-linearis_contig99.17165.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6177bp|location=Sequence derived from alignment at C-linearis_contig99:272255..278431- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:272255..278431- >mRNA_C-linearis_contig99.17165.1 ID=mRNA_C-linearis_contig99.17165.1|Name=mRNA_C-linearis_contig99.17165.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2628bp|location=Sequence derived from alignment at C-linearis_contig99:272255..278431- (Chordaria linearis ClinC8C monoicous)back to top |