mRNA_C-linearis_contig99.17162.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: D7G7V3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7V3_ECTSI) HSP 1 Score: 510 bits (1313), Expect = 1.690e-175 Identity = 273/410 (66.59%), Postives = 318/410 (77.56%), Query Frame = 2 Query: 95 LVASPIAFRPVALTLRFASSSRDRLHLTRHXXXXXXXXXACYRTSSGRSSTRSSATLQRSLPILGVDAGFGLASVSALGALRLLGSTAVAPKRVRVVTDIDDTVKSSGNKRLFGVPLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQEPLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKEAMVKIPPKSSKWVDMNRDLLLARIAGKRQQLPSMGVEALTLTQHGGALAPKISHILKRSGPTXXXXXXXXXXXAAATKARP 1324 LVASP AFRP++ F R+ + +S+G LQR+ +LG+DAG G+A +SAL A+RL + ++ PKRVRVVTDIDDTVKSSGNKRLFGVPLGGIDAQY RGVFYPGVFQFSLELSR+RVPSWQEPLSVAVLTARAREFLFALEIGDTHEI+++FR CG+RNG+K WGRGPVLYGSVKEW+CPSRKSERKA+NFGFLLEDD +GGR RPSGAEGGYIFIGDTGEGDP AGEIM +++PDRM+AVFLHVVSD P+QGKV +PMDRVV+ VPVVYFRTYVGAA KAVELGLM+K GL+NVITAAKEAM K+P +SSKW D+NRDL++A+ + QLPS+GV+ LT + AL KI+ KR+G AATK RP Sbjct: 14 LVASPRAFRPLSQPCCFR----------RYLNGDKWSISSTSCSSTGNVGRERLQPLQRAASMLGMDAGLGVAGLSALSAVRLF-TASITPKRVRVVTDIDDTVKSSGNKRLFGVPLGGIDAQYRRGVFYPGVFQFSLELSRYRVPSWQEPLSVAVLTARAREFLFALEIGDTHEITREFRQCGERNGIKKWGRGPVLYGSVKEWVCPSRKSERKARNFGFLLEDDEKGGRGRPSGAEGGYIFIGDTGEGDPRAGEIMSAEHPDRMRAVFLHVVSDGPQQGKVPVPMDRVVNAVPVVYFRTYVGAAVKAVELGLMDKKGLENVITAAKEAMTKVPRQSSKWEDINRDLMMAQTS--ETQLPSIGVKTLT-SALDDALGSKIN--TKRNGAVRRRPPVT----TAATKKRP 403
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: A0A835YMG4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMG4_9STRA) HSP 1 Score: 274 bits (700), Expect = 3.230e-85 Identity = 148/258 (57.36%), Postives = 177/258 (68.60%), Query Frame = 2 Query: 374 VRVVTDIDDTVKSSGNKRLFGV-PLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQEPLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKEAMVK--IPPKSSKWVDMNRDL 1138 +RVVTDIDDTVKSSGN RL GV PLGGIDAQY RG FYPGVFQF LEL+ H VP PL +AVLTARA+E LFALE+ H +S +R CG NG++GWG GP+LYGSVKEWIC +RKS RK KNF L+E DGR R E Y+FIGDTGEGD AG M +P ++A+FLH+V KV P D V+GVPV++F+TYVGAA KA E GL+N+ ++ VI A E + P SSKW D+ D+ Sbjct: 3 LRVVTDIDDTVKSSGNLRLAGVIPLGGIDAQYERGQFYPGVFQFGLELAAHGVPRGLMPLPIAVLTARAKELLFALELDMEHPVSVAYRQCGAENGMEGWGLGPILYGSVKEWICWTRKSRRKVKNFRRLMELDGRNAIARGYMTE--YVFIGDTGEGDFKAGIKMCENFPRELRALFLHMVYCVDDVCKV--PEDYAVNGVPVLFFKTYVGAARKAYEAGLLNRYAVERVIAKAVEELEYSGAPRTSSKWSDLEADI 256
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: A0A7S4CYL7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CYL7_9EUGL) HSP 1 Score: 268 bits (685), Expect = 5.360e-80 Identity = 138/263 (52.47%), Postives = 181/263 (68.82%), Query Frame = 2 Query: 374 VRVVTDIDDTVKSSGNKRLFGVPLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQEPLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKEAMVKIPPKS----SKWVDMNRDLLLAR 1150 ++V+TDIDDTVKSSG + G+PLGGID QY RG+FYPGVF+F LEL+ + + PLSVAVLTARAREFLFALE+ ++H I K FR G +G + WG G VLYGSV+EW+C RKS RK +NF LL P A ++F+GDTGE D AGEIM+ ++P M+A+FLHVV+ P LP D++++G PVV+FRTYVGAA KAV+ GL+ GL V+ AA+ + +I P+S S+W D+NRD+ L + Sbjct: 215 LQVITDIDDTVKSSGGVKFGGIPLGGIDTQYRRGLFYPGVFRFMLELASYATT--EAPLSVAVLTARAREFLFALELDESHAICKAFRDTGRASGHEDWGIGEVLYGSVQEWVCQGRKSWRKVENFKLLLSS-------LPPDAARRFVFVGDTGELDQEAGEIMLEEFPSCMQALFLHVVAPDPALVPAPLPRDKLINGAPVVFFRTYVGAARKAVKYGLLGVDGLAAVVEAARADLERIEPESAGGSSRWADLNRDIALCQ 468
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: A0A835YPL0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPL0_9STRA) HSP 1 Score: 261 bits (668), Expect = 6.030e-80 Identity = 143/256 (55.86%), Postives = 169/256 (66.02%), Query Frame = 2 Query: 380 VVTDIDDTVKSSGNKRLFG-VPLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQEPLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVI--TAAKEAMVKIPPKSSKWVDMNRDL 1138 VVTDIDDTVKSSGN RL G +PLGGIDAQY RG FYPGVFQF+LEL+ H P PL VAVLTARA+EFLFALE+ H +S +R CG NG GWG GPVLYGSVKEWI +RK RK KNF L+E DG R G YIFIGDTGEGD AG M +P ++A+F+H VS P D ++GVPV++F+TYVGAA KA E GLM+K+G+ VI + + + P SKW DM D+ Sbjct: 38 VVTDIDDTVKSSGNLRLAGLIPLGGIDAQYERGQFYPGVFQFALELAAHGTPQGLLPLPVAVLTARAKEFLFALELKTEHPVSIAYRQCGTDNGFDGWGLGPVLYGSVKEWIVWTRKGRRKFKNFKRLMEIDGTHAAAR--GCATDYIFIGDTGEGDTKAGVKMCETFPRELRAMFMHAVSCDSEY--CITPDDYTINGVPVLFFKTYVGAARKAYEAGLMDKAGVQRVIDRSVMELELSGAPRDCSKWEDMEMDI 289
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: A0A6V2PZW2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PZW2_9STRA) HSP 1 Score: 254 bits (648), Expect = 1.760e-76 Identity = 134/268 (50.00%), Postives = 177/268 (66.04%), Query Frame = 2 Query: 377 RVVTDIDDTVKSSGNKRLFGVPLGGIDAQYSRGVFYPGVFQFSLELSRHRV---PSWQE-----------PLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKEAMVKIPPKSSKWVDMNRDL 1138 +V++D+DDT+KSSG + GV LGGID QY RG FYPGVFQF LELS H++ P+ E P VAVLTARA EF ALE+ +++K FR G++ G++ WG GPVLYGSV EW+ RK RK NF L+E D P+G Y+++GDTGE D AGE M+ +YP+ +KAVFLHVVSDAP +P ++++G P+V+FRTYVGAAAKAV+LGLM + GL VI A+ A+ +P + KW+D+ RD+ Sbjct: 62 QVISDVDDTLKSSGGVNVAGVALGGIDVQYERGDFYPGVFQFMLELSMHKLGEGPNESEGDDTGEEDRLYPPKVAVLTARAEEFKVALELKGNSKLAKAFRKTGEKAGIEDWGLGPVLYGSVAEWVIQDRKGLRKFSNFERLIEQD-------PTGTIMQYVYVGDTGELDQEAGETMLREYPEVVKAVFLHVVSDAPFP---RIPPPKLINGRPIVFFRTYVGAAAKAVQLGLMYEEGLMRVIVEAEAALEGVPRSNEKWLDLERDI 319
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: W7UBU9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UBU9_9STRA) HSP 1 Score: 252 bits (643), Expect = 1.070e-74 Identity = 130/236 (55.08%), Postives = 162/236 (68.64%), Query Frame = 2 Query: 374 VRVVTDIDDTVKSSGNKRLFGVPLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQEPLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKE 1081 ++V+TDIDDTVKSSG RL G+ LGGID QY RG +YPG FQF+LELSR VP +EP VAVLTARAREF FALE+ +H++ + + G NG++GWG G VLYGSVKEW+C SRK RK +NF L D R + Y+F+GDTGE D AGE MI KYP R+KA+F+H VS++ + P DR + VPV+YFRTYVGAA KA ELGL+ SG++ V+ E Sbjct: 106 LQVITDIDDTVKSSGGLRLMGMALGGIDTQYKRGQYYPGAFQFALELSRFGVPEGREPARVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGVEGWGVGTVLYGSVKEWVCQSRKGLRKFRNFEALRAQD------RLDRTD--YVFVGDTGELDLQAGESMIRKYPSRIKALFMHYVSES--RPSPPPPRDRTLLDVPVIYFRTYVGAAVKAAELGLLGPSGVEAVVARTLE 331
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: A0A7S2IAS8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IAS8_9STRA) HSP 1 Score: 248 bits (634), Expect = 2.940e-74 Identity = 131/267 (49.06%), Postives = 174/267 (65.17%), Query Frame = 2 Query: 377 RVVTDIDDTVKSSGNKRLFGVPLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQE-------------PLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKEAMVKIPPKSSKWVDMNRDL 1138 +V++D+DDT+KSSG + GV LGGID QY+RG FYPGVFQF LELS + + + P VAVLTARA EF ALE+ +++K FR G++ G+ WG GPVLYGSV EW+ RK RK NF L+E D P+G Y+++GDTGE D AGE M+ +YP+ +KAVFLHVVSDAP +P ++++G PVV+FRTYVGAAA+AV+LGLM + GL VI A+ A+ +P + KW+D+ RD+ Sbjct: 74 QVISDVDDTLKSSGGVTVAGVALGGIDIQYTRGEFYPGVFQFMLELSMPTLDNDDDENDTENEKSQFLYPPKVAVLTARAEEFKVALELKGNSKLAKAFRKTGEKAGIDDWGLGPVLYGSVAEWVIQDRKGMRKFSNFERLIEQD-------PTGTIMQYVYVGDTGELDQEAGETMLREYPEVVKAVFLHVVSDAPFP---RVPPPKLINGRPVVFFRTYVGAAARAVQLGLMQEEGLMRVIVEAEAALKGVPTSNEKWLDLERDI 330
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: A0A7S3A3W7_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A3W7_9RHOD) HSP 1 Score: 248 bits (633), Expect = 1.040e-73 Identity = 132/272 (48.53%), Postives = 178/272 (65.44%), Query Frame = 2 Query: 365 PKRVRVVTDIDDTVKSSGNKRLFGVPLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQEPLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKEAMVKIPP--KSSKWVDMNRDLLLARIAGKRQQL 1174 P+R++V+TDIDDTVKSSG R+ G LGGID+QY RG YPGVFQF+LE++ +P EPL +AVLTARARE FAL + + H I +++R CG G WG GPVLYGSVKEW+ S+K RK +NF LL + G + YI++GDTGE D AG++M+ KYP MKAVFLHVV + + D V VPV++FRTYVGAA KAVE G+++++ + V A + +++I P SSKWVD+ +D+ + + +R L Sbjct: 100 PERIQVITDIDDTVKSSGGLRVAGQYLGGIDSQYKRGDCYPGVFQFALEIATSGLPEDVEPLPMAVLTARARELKFALALEEHHPICRKYRYCGMERGFDDWGIGPVLYGSVKEWLFQSKKGVRKFRNF-QLLHNYNASNCGVGIGCQTKYIYVGDTGELDLHAGKLMLQKYPSEMKAVFLHVVYNERDDPALKSYEDTHVKNVPVLFFRTYVGAARKAVEHGIISEAAMRRVAAKALKELLRIEPDHSSSKWVDLRKDIKDSDLVPRRHWL 370
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: A0A7S0UKK8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UKK8_9STRA) HSP 1 Score: 244 bits (624), Expect = 3.250e-73 Identity = 127/259 (49.03%), Postives = 171/259 (66.02%), Query Frame = 2 Query: 377 RVVTDIDDTVKSSGNKRLFGVPLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQEPLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKEAMVKIPPKSSKWVDMNRDLLLARI 1153 +V++D+DDT+KSSG + GV LGGID QY RG FYPGV +F L LS+ + P ++A+LTARA EF ALEI + +++ R G++ G+ GWG GPVLYGSV EWI RK RK NF L+E D P+G YI++GDTGE D AGE M+ +YP+ MKAVFLHVV+D +G +P ++++G PV++FRTYVGAA AV+LGLM+ GL +VI AA E + +P S KW D+ +D+ A + Sbjct: 55 QVISDVDDTLKSSGGVSVGGVALGGIDVQYDRGDFYPGVGEFMLALSQCGLTEEVNPANIAILTARAEEFKAALEIKEGSKLAVALRSAGEKVGINGWGVGPVLYGSVAEWIAQDRKGLRKFTNFERLIEQD-------PTGTIFQYIYVGDTGELDQEAGETMLREYPEVMKAVFLHVVTDDV-EGPPLIPPPKLINGHPVIFFRTYVGAAIDAVQLGLMSLDGLQSVIEAATEKLSDVPENSDKWKDIRKDMARADV 305
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: A0A1E7FEW2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEW2_9STRA) HSP 1 Score: 243 bits (621), Expect = 1.350e-72 Identity = 128/261 (49.04%), Postives = 171/261 (65.52%), Query Frame = 2 Query: 377 RVVTDIDDTVKSSGNKRLFGVPLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQE--PLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKEAMVKIPPKSSKWVDMNRDLLLARI 1153 +V++D+DDT+KSSG + GV LGGID QY RG FYPGV +F L+LS +++ P ++A+LTARA EF ALEI D ++S R G++ G++GWG GPVLYGSV EWI RK RK NF L++ D P+G YI++GD GE D AGE M+ +YP+ +KAVFLHVV+D + +P + ++G P+V+FRTYVGAA AV+LGLMN GL +VI AA E + +P S KW D+ +DL A I Sbjct: 63 QVISDVDDTLKSSGGVNVGGVALGGIDVQYGRGDFYPGVAEFMLQLSLYKLLQQDSNYPANIAILTARAEEFKAALEIKDGSKLSIALRSAGEKAGIEGWGVGPVLYGSVAEWIIQDRKGLRKFTNFERLMQQD-------PAGVIFQYIYVGDVGELDQEAGETMVREYPEVVKAVFLHVVTDQADVPPI-IPAPKFINGRPIVFFRTYVGAAVDAVQLGLMNLDGLQSVINAAIEKLSDVPETSDKWKDIRKDLSRAEI 315 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17162.1 >prot_C-linearis_contig99.17162.1 ID=prot_C-linearis_contig99.17162.1|Name=mRNA_C-linearis_contig99.17162.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=428bp MRCSTGAGRLTAFVMSTLVASPIAFRPVALTLRFASSSRDRLHLTRHHLHback to top mRNA from alignment at C-linearis_contig99:259211..262375+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17162.1 ID=mRNA_C-linearis_contig99.17162.1|Name=mRNA_C-linearis_contig99.17162.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3165bp|location=Sequence derived from alignment at C-linearis_contig99:259211..262375+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:259211..262375+ >mRNA_C-linearis_contig99.17162.1 ID=mRNA_C-linearis_contig99.17162.1|Name=mRNA_C-linearis_contig99.17162.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2568bp|location=Sequence derived from alignment at C-linearis_contig99:259211..262375+ (Chordaria linearis ClinC8C monoicous)back to top |