mRNA_C-linearis_contig99.17159.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig99.17159.1 vs. uniprot
Match: D7G7V6_ECTSI (Acyl carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7V6_ECTSI) HSP 1 Score: 216 bits (551), Expect = 2.790e-66 Identity = 121/143 (84.62%), Postives = 129/143 (90.21%), Query Frame = 3 Query: 12 MQRVAAAALGRAVCLGARRVGSTS-QARSLQLHNAWQ-APVAA-RQFHFSRPVAGAAGESFLEKGDVTARILAVVKAFEKVDPTKVSETALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 431
MQRVA AALGRA CL ARR GS + + RSLQLHN+WQ AP AA R FHFSRPVAGAAG++FL+KGD TARI+AVVKAFEKVDPTKVSE ALFKDDL+LDSLDAVEVVMAIEDEFTIEIPDSEADKI GIADAVAYIISHPAAK
Sbjct: 1 MQRVAVAALGRAACLTARRAGSAAARGRSLQLHNSWQQAPAAAVRHFHFSRPVAGAAGDTFLDKGDATARIIAVVKAFEKVDPTKVSENALFKDDLALDSLDAVEVVMAIEDEFTIEIPDSEADKIAGIADAVAYIISHPAAK 143
BLAST of mRNA_C-linearis_contig99.17159.1 vs. uniprot
Match: A0A1E7ETX9_9STRA (Acyl carrier protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ETX9_9STRA) HSP 1 Score: 116 bits (290), Expect = 6.170e-28 Identity = 59/87 (67.82%), Postives = 71/87 (81.61%), Query Frame = 3 Query: 171 AGESFLEKGDVTARILAVVKAFEKVDPTKVSETALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 431
A +FL+ G+V+ RI VVK F+KVD K++ETA F +DL LDSLDAVEVVMAIEDEF IEIPD+EADKI+ +ADAV YI+SHP AK
Sbjct: 35 AASTFLDAGEVSTRIQGVVKNFDKVDQNKITETAKFTEDLGLDSLDAVEVVMAIEDEFAIEIPDAEADKILSVADAVEYIVSHPMAK 121
BLAST of mRNA_C-linearis_contig99.17159.1 vs. uniprot
Match: A0A059LDR7_9CHLO (Acyl carrier protein n=2 Tax=unclassified Helicosporidium TaxID=2626013 RepID=A0A059LDR7_9CHLO) HSP 1 Score: 115 bits (289), Expect = 1.090e-27 Identity = 57/91 (62.64%), Postives = 76/91 (83.52%), Query Frame = 3 Query: 159 VAGAAGESFLEKGDVTARILAVVKAFEKVDPTKVSETALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 431
V G A S+L+K DVT+R+LA+VK FEKVDP KV+E+A F+ DL LDSLD VE+VMA+E+EF IEIPD+EADKI+ +++AV+Y+ S+P AK
Sbjct: 39 VRGFADSSYLDKSDVTSRVLAIVKNFEKVDPAKVTESAAFQKDLGLDSLDTVELVMALEEEFAIEIPDAEADKILSVSEAVSYVASNPLAK 129
BLAST of mRNA_C-linearis_contig99.17159.1 vs. uniprot
Match: A0A7S0UFZ0_9STRA (Acyl carrier protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UFZ0_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.100e-27 Identity = 60/93 (64.52%), Postives = 72/93 (77.42%), Query Frame = 3 Query: 153 RPVAGAAGESFLEKGDVTARILAVVKAFEKVDPTKVSETALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 431
+P+ A +FL+ G+V RI V+K F+KVD KV++TA F DDL LDSLDAVEVVMAIEDEF IEIPD+EADKI+ +ADAV YI SHP AK
Sbjct: 26 QPLRTFAASTFLDSGEVAGRITGVIKNFDKVDGNKVTDTAKFTDDLGLDSLDAVEVVMAIEDEFAIEIPDAEADKILSVADAVEYISSHPMAK 118
BLAST of mRNA_C-linearis_contig99.17159.1 vs. uniprot
Match: A0A7S1FKS7_9STRA (Acyl carrier protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FKS7_9STRA) HSP 1 Score: 114 bits (286), Expect = 3.500e-27 Identity = 57/84 (67.86%), Postives = 72/84 (85.71%), Query Frame = 3 Query: 180 SFLEKGDVTARILAVVKAFEKVDPTKVSETALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 431
SFL+ +V++R++ VVKAF+KVDP+KV+ T+ F DDL LDSLDAVEVVMAIEDEF IEIPD+EAD+I+ + DAVAYI +HP AK
Sbjct: 52 SFLDPSEVSSRVVEVVKAFDKVDPSKVAATSKFADDLGLDSLDAVEVVMAIEDEFAIEIPDAEADRILSVEDAVAYISAHPMAK 135
BLAST of mRNA_C-linearis_contig99.17159.1 vs. uniprot
Match: A0A7S2LP29_9STRA (Acyl carrier protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LP29_9STRA) HSP 1 Score: 114 bits (285), Expect = 4.340e-27 Identity = 63/98 (64.29%), Postives = 72/98 (73.47%), Query Frame = 3 Query: 138 QFHFSRPVAGAAGESFLEKGDVTARILAVVKAFEKVDPTKVSETALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 431
+ +FSR AG G SFL+ G+VT RI+ VVK F+KVDP KV ++ F DDL LDSLD VEVVMAIEDEF IEIPD EADKI I DA YI +HP AK
Sbjct: 36 RLNFSRGFAG--GTSFLDAGEVTERIVQVVKNFDKVDPAKVHASSKFVDDLGLDSLDTVEVVMAIEDEFAIEIPDVEADKIASITDATEYIAAHPMAK 131
BLAST of mRNA_C-linearis_contig99.17159.1 vs. uniprot
Match: A0A7S2SKU6_9STRA (Acyl carrier protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SKU6_9STRA) HSP 1 Score: 113 bits (282), Expect = 9.290e-27 Identity = 59/88 (67.05%), Postives = 69/88 (78.41%), Query Frame = 3 Query: 168 AAGESFLEKGDVTARILAVVKAFEKVDPTKVSETALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 431
AAG +FL+ +VT RI++VVK F+KVDP V + F+DDL LDSLD+VEVVMAIEDEF IEIPD+EADKI IADAV YI HP AK
Sbjct: 36 AAGSTFLDPSEVTDRIVSVVKNFDKVDPANVQPESKFEDDLGLDSLDSVEVVMAIEDEFAIEIPDAEADKIASIADAVEYIAGHPMAK 123
BLAST of mRNA_C-linearis_contig99.17159.1 vs. uniprot
Match: A0A7S2EA28_TRICV (Acyl carrier protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EA28_TRICV) HSP 1 Score: 113 bits (282), Expect = 9.290e-27 Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 3 Query: 150 SRPVAGAAGESFLEKGDVTARILAVVKAFEKVDPTKVSETALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 431
++PV A +FL +VT RI++VVK F+KVDP KV+ T+ F +DL LDSLD+VEVVMAIEDEF IEIPD+EADKIV I DAV YI HP AK
Sbjct: 30 AQPVRTFAASTFLSPNEVTERIVSVVKNFDKVDPGKVAPTSKFAEDLGLDSLDSVEVVMAIEDEFAIEIPDAEADKIVSIGDAVEYIAGHPMAK 123
BLAST of mRNA_C-linearis_contig99.17159.1 vs. uniprot
Match: A0A6U4LK30_9STRA (Acyl carrier protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4LK30_9STRA) HSP 1 Score: 112 bits (279), Expect = 2.300e-26 Identity = 66/122 (54.10%), Postives = 81/122 (66.39%), Query Frame = 3 Query: 66 RVGSTSQARSLQLHNAWQAPVAARQFHFSRPVAGAAGESFLEKGDVTARILAVVKAFEKVDPTKVSETALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 431
RV +QA + + A AP+A R F +FLEKG VT RI+ V+K F+KVD KV+E A FK+DL LDSLDAVEVVMAIE+EF IEIPD+EAD I + DA+ +I SHP AK
Sbjct: 9 RVLRAAQAARMPMALARPAPMAIRAF----------SSTFLEKGMVTERIMVVIKNFDKVDAGKVTEKATFKEDLGLDSLDAVEVVMAIEEEFAIEIPDAEADAIKSVEDAITFISSHPMAK 120
BLAST of mRNA_C-linearis_contig99.17159.1 vs. uniprot
Match: A0A6U6F713_9STRA (Acyl carrier protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6F713_9STRA) HSP 1 Score: 112 bits (279), Expect = 2.510e-26 Identity = 67/126 (53.17%), Postives = 79/126 (62.70%), Query Frame = 3 Query: 54 LGARRVGSTSQARSLQLHNAWQAPVAARQFHFSRPVAGAAGESFLEKGDVTARILAVVKAFEKVDPTKVSETALFKDDLSLDSLDAVEVVMAIEDEFTIEIPDSEADKIVGIADAVAYIISHPAAK 431
L AR S RS NA+ + +S+PV A +FL +VT RI+ VVK F+KVDP KV + F +DL LDSLD+VEVVMAIEDEF IEIPD+EADKI I DAV YI HP AK
Sbjct: 4 LAARTAASRLAVRSTVQSNAFAS------LRYSQPVRTFAATTFLNPEEVTDRIVTVVKNFDKVDPDKVESASKFAEDLGLDSLDSVEVVMAIEDEFAIEIPDAEADKIASIEDAVEYIAGHPMAK 123 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17159.1 >prot_C-linearis_contig99.17159.1 ID=prot_C-linearis_contig99.17159.1|Name=mRNA_C-linearis_contig99.17159.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=141bp MQRVAAAALGRAVCLGARRVGSTSQARSLQLHNAWQAPVAARQFHFSRPVback to top mRNA from alignment at C-linearis_contig99:242880..245606+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17159.1 ID=mRNA_C-linearis_contig99.17159.1|Name=mRNA_C-linearis_contig99.17159.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2727bp|location=Sequence derived from alignment at C-linearis_contig99:242880..245606+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:242880..245606+ >mRNA_C-linearis_contig99.17159.1 ID=mRNA_C-linearis_contig99.17159.1|Name=mRNA_C-linearis_contig99.17159.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at C-linearis_contig99:242880..245606+ (Chordaria linearis ClinC8C monoicous)back to top |