mRNA_C-linearis_contig99.17156.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig99.17156.1 vs. uniprot
Match: D7G7V8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7V8_ECTSI) HSP 1 Score: 391 bits (1005), Expect = 3.400e-129 Identity = 323/461 (70.07%), Postives = 347/461 (75.27%), Query Frame = 1 Query: 103 MSLLGLAGYDSDGSDGDEG---NPRRSPQGQNSSAXXXXXXXXXXXXXXXXXXXXXXIKMIEENSDSRLGESVDEEACASREARVGVLRASSFDAPAPPSKESRQFFMPLPSPLVRLDNASPSASSPFIT-EPPDGAAAGAEAEGEAGVGAGEENA-EEGDCDVIKPEYRDMLPPEATGQASPKLRAKIQELLNRKR-DFTKTIKGNKDYGNPAVLAQICRYCSVDDKGTNYPKDRMVHPSVYDTKDFHDSLMMREKLSSRAKRPTPDEAQXXXXXXXXXXXXXXXXXXXSAVRPAAATGARGSVDXXXXXXXXXXXTRKRGSKWGVASTTSTTNPSLAFGGQQVQGIPPIQMSHMQGAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGRVGKGFSADPGATAVRAGQVAML-NAQ---AQADKEAQQRAEAIARVQV 1455
MSLLGLAGYD+DGSDGDEG N RRSPQ +N+S +EENSDSRLGESVDEEA A+RE R G+LRASSFDAPAPPSKESRQFFMPLPSPLV+LDNASPSASSPFIT EPPDG A GA AEGE G GA ++ A +EGD D+IKPEYRDMLPPEATGQA+P+LRAK+Q+ LNR + DFTK IKG KDYGNPAVLAQICRYCSVDDKGTNYP DRMVHPSVYDTKDFHDSLMM+E+ RAKRP XXXXXXXXXXXXXXXXXXX AAATGARGSVD TRKRGSKWGVA + SL F GQQ+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +KGRVG FSADPGATA RAGQ A+L NAQ AQA+KEAQ RAEAIARVQ+
Sbjct: 1 MSLLGLAGYDTDGSDGDEGANNNQRRSPQAENTSGAQEPAAGASGSSNAN--------NALEENSDSRLGESVDEEAGANRELRTGILRASSFDAPAPPSKESRQFFMPLPSPLVKLDNASPSASSPFITYEPPDGTAGGAGAEGE-GEGAADDGAKDEGDGDIIKPEYRDMLPPEATGQANPELRAKLQKFLNRMQGDFTKVIKGKKDYGNPAVLAQICRYCSVDDKGTNYPADRMVHPSVYDTKDFHDSLMMQEQR--RAKRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATGARGSVDAAVPAASGS--TRKRGSKWGVAGS------SLPFAGQQMX-------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPVSKGRVG--FSADPGATAARAGQAALLLNAQVQAAQAEKEAQHRAEAIARVQM 427
BLAST of mRNA_C-linearis_contig99.17156.1 vs. uniprot
Match: A0A6H5L310_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L310_9PHAE) HSP 1 Score: 378 bits (970), Expect = 3.590e-124 Identity = 277/462 (59.96%), Postives = 302/462 (65.37%), Query Frame = 1 Query: 103 MSLLGLAGYDSDGSDGDEGNPRRSPQGQNSSAXXXXXXXXXXXXXXXXXXXXXXIKMIEENSDSRLGESVDEEACASREARVGVLRASSFDAPAPPSKESRQFFMPLPSPLVRLDNASPSASSPFIT-EPPDGAAAGAEAEGEAGVGAGEENAEEGDCDVIKPEYRDMLPPEATGQASPKLRAKIQELLNRKR-DFTKTIKGNKDYGNPAVLAQICRYCSVDDKGTNYPKDRMVHPSVYDTKDFHDSLMMREKLSSRAKRPTPDEAQXXXXXXXXXXXXXXXXXXXSA---VRPAAATGARGSVDXXXXXXXXXXXTRKRGSKWGVASTTSTTNPSLAFGGQQVQ--GIPPIQMSHMQGAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGRVGKGFSADPGATAVRAGQVAML-NAQ---AQADKEAQQRAEAIARVQV 1455
MSLLGLAGYD+DGS XXXXXXXXXXXXXXXXXXXXXX +EENSDSRLGE VDEE +RE R G+LRASSFDAPAPPSKESRQFFMPLPSPLV+LDNASPSASSPF T EPPDGA GA EG A + +EGD D+IKPEYRDMLPPEATGQA+P+LRAK+Q+ LNR + DFTK IKG KDYGNPAVLAQICRYCSVDDKGTNYP DRMVHPSVYDTKDFHD+LMM+E+ RAKRP PDEA+ X +RPAAATGARGSVD TRKRGSKWGVA + SL F GQQ+Q P+ HMQG+AAA +KGRVG FSADPGATA RAGQ A+L NAQ AQA+KEAQ RAEAIARVQV
Sbjct: 1 MSLLGLAGYDTDGSX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNALEENSDSRLGELVDEEEGTNRELRAGILRASSFDAPAPPSKESRQFFMPLPSPLVKLDNASPSASSPFTTYEPPDGATGGAGEEGGGEDVADDGAKDEGDGDIIKPEYRDMLPPEATGQANPELRAKLQKFLNRMQGDFTKVIKGKKDYGNPAVLAQICRYCSVDDKGTNYPADRMVHPSVYDTKDFHDALMMQEQR--RAKRPKPDEAKANTPHLNKVAQGATVAAAXXXXPPLRPAAATGARGSVDAAVPAASGS--TRKRGSKWGVAGS------SLPFAGQQMQMQAAAPVPTPHMQGSAAASTLPLAGSGMARTGSVGAGTTAPV-----------------------SKGRVG--FSADPGATAARAGQAALLLNAQVQAAQAEKEAQHRAEAIARVQV 422
BLAST of mRNA_C-linearis_contig99.17156.1 vs. uniprot
Match: F7AXJ5_XENTR (SAP30-binding protein n=2 Tax=Xenopus TaxID=8353 RepID=F7AXJ5_XENTR) HSP 1 Score: 66.2 bits (160), Expect = 2.520e-8 Identity = 32/89 (35.96%), Postives = 55/89 (61.80%), Query Frame = 1 Query: 604 LPPEATGQASPKLRAKIQEL----LNRKRDFTKTIKGNKDYGNPAVLAQICRYCSVDDKGTNYPKDRMVHPSVYDTKDFHDSLMMREKL 858
+PPE G+ S L+ KIQ+L LN + D + I+ K++ NP++ ++ ++CS+D+ GTNYPKD M P + +++SL +K+
Sbjct: 112 IPPEPPGRCSNHLQEKIQKLYEKKLNERMDMNRIIQKKKEFRNPSIYEKLIQFCSIDELGTNYPKD-MFDPHGWSEDSYYESLAKAQKI 199
BLAST of mRNA_C-linearis_contig99.17156.1 vs. uniprot
Match: A7VKD4_GLARU (mRNA, similar to transcriptional regulator protein (Fragment) n=1 Tax=Glandirana rugosa TaxID=8410 RepID=A7VKD4_GLARU) HSP 1 Score: 63.2 bits (152), Expect = 6.140e-8 Identity = 31/89 (34.83%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 604 LPPEATGQASPKLRAKIQELLNRK----RDFTKTIKGNKDYGNPAVLAQICRYCSVDDKGTNYPKDRMVHPSVYDTKDFHDSLMMREKL 858
+PPE G+ S L+ KIQ+L RK D + I+ K++ NP++ ++ ++CS+D+ GTNYPKD M P + ++++L +K+
Sbjct: 56 IPPEPPGRCSIHLQEKIQKLYERKLKEGTDMNQIIQKKKEFRNPSIYEKLIQFCSIDELGTNYPKD-MFDPHGWSEDSYYEALAKAQKI 143
BLAST of mRNA_C-linearis_contig99.17156.1 vs. uniprot
Match: A0A7K6XIG8_9PASE (S30BP protein (Fragment) n=1 Tax=Promerops cafer TaxID=254652 RepID=A0A7K6XIG8_9PASE) HSP 1 Score: 63.5 bits (153), Expect = 1.250e-7 Identity = 30/89 (33.71%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 604 LPPEATGQASPKLRAKIQELLNRKR----DFTKTIKGNKDYGNPAVLAQICRYCSVDDKGTNYPKDRMVHPSVYDTKDFHDSLMMREKL 858
+PPE G+ S +L+ KI++L RK D I+ K++ NP++ ++ ++CS+D+ GTNYPKD M P + ++++L +K+
Sbjct: 122 IPPEPPGRCSDQLQDKIEKLYERKMKEGMDMNNIIQNKKEFRNPSIYEKLIQFCSIDEIGTNYPKD-MFDPHSWSEDSYYEALAKAQKI 209
BLAST of mRNA_C-linearis_contig99.17156.1 vs. uniprot
Match: A0A7N4P6J2_SARHA (SAP30 binding protein n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=A0A7N4P6J2_SARHA) HSP 1 Score: 63.5 bits (153), Expect = 1.310e-7 Identity = 32/89 (35.96%), Postives = 53/89 (59.55%), Query Frame = 1 Query: 604 LPPEATGQASPKLRAKIQELLNRK----RDFTKTIKGNKDYGNPAVLAQICRYCSVDDKGTNYPKDRMVHPSVYDTKDFHDSLMMREKL 858
+PPE G+ S L+ KIQ+L RK D I+ K++ NP++ ++ +YCS+D+ GTNYPKD M P + ++++L +K+
Sbjct: 105 IPPEPPGRCSNHLQDKIQKLYERKIKEGMDMNYIIQRKKEFRNPSIYEKLIQYCSIDELGTNYPKD-MFDPHGWSEDSYYEALAKAQKI 192
BLAST of mRNA_C-linearis_contig99.17156.1 vs. uniprot
Match: A0A1L8EUE7_XENLA (SAP30 binding protein L homeolog isoform X1 n=4 Tax=Anura TaxID=8342 RepID=A0A1L8EUE7_XENLA) HSP 1 Score: 63.9 bits (154), Expect = 1.460e-7 Identity = 31/89 (34.83%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 604 LPPEATGQASPKLRAKIQELLNRK----RDFTKTIKGNKDYGNPAVLAQICRYCSVDDKGTNYPKDRMVHPSVYDTKDFHDSLMMREKL 858
+PPE G+ S L+ KIQ+L +K D + I+ K++ NP++ ++ ++CS+D+ GTNYPKD M P + +++SL +K+
Sbjct: 112 IPPEPPGRCSNHLQEKIQKLYEKKLKEGTDMNRIIQKKKEFRNPSIYEKLIQFCSIDELGTNYPKD-MFDPHGWSEDSYYESLAKAQKI 199
BLAST of mRNA_C-linearis_contig99.17156.1 vs. uniprot
Match: A0A672I3A3_SALFA (SAP30 binding protein n=3 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672I3A3_SALFA) HSP 1 Score: 63.9 bits (154), Expect = 1.500e-7 Identity = 32/89 (35.96%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 604 LPPEATGQASPKLRAKIQELLNRKR----DFTKTIKGNKDYGNPAVLAQICRYCSVDDKGTNYPKDRMVHPSVYDTKDFHDSLMMREKL 858
+PPE G+ S +L+ KIQ+L RK D I+ K++ NP++ ++ +YCS+D+ GTNYPKD M P + ++++L +K+
Sbjct: 113 IPPEPPGRCSSQLQEKIQKLYERKLHGAFDTNSHIQQKKEFRNPSIYEKLIQYCSIDELGTNYPKD-MFDPHGWSEDSYYEALAKAQKV 200
BLAST of mRNA_C-linearis_contig99.17156.1 vs. uniprot
Match: A0A7L4G3A7_9COLU (S30BP protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L4G3A7_9COLU) HSP 1 Score: 62.4 bits (150), Expect = 1.580e-7 Identity = 31/89 (34.83%), Postives = 53/89 (59.55%), Query Frame = 1 Query: 604 LPPEATGQASPKLRAKIQELLNRK----RDFTKTIKGNKDYGNPAVLAQICRYCSVDDKGTNYPKDRMVHPSVYDTKDFHDSLMMREKL 858
+PPE G+ S +L+ KIQ L RK D I+ K++ NP++ ++ ++CS+D+ GTNYPKD M P + ++++L +K+
Sbjct: 19 IPPEPPGRCSNQLQDKIQRLYERKIKEGMDMNYIIQRKKEFRNPSIYEKLIQFCSIDELGTNYPKD-MFDPHGWSEDSYYEALAKAQKI 106
BLAST of mRNA_C-linearis_contig99.17156.1 vs. uniprot
Match: A0A7L1DWA5_OENON (S30BP protein (Fragment) n=1 Tax=Oenanthe oenanthe TaxID=279966 RepID=A0A7L1DWA5_OENON) HSP 1 Score: 63.2 bits (152), Expect = 1.580e-7 Identity = 31/89 (34.83%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 604 LPPEATGQASPKLRAKIQELLNRKR----DFTKTIKGNKDYGNPAVLAQICRYCSVDDKGTNYPKDRMVHPSVYDTKDFHDSLMMREKL 858
+PPE G+ S +L+ KI++L RKR D I+ K + NP++ ++ ++CS+D+ GTNYPKD M P + ++++L +K+
Sbjct: 117 IPPEPPGRCSNQLQDKIEKLYERKRKEGMDMNSIIQKKKAFRNPSIYKKLIQFCSIDEFGTNYPKD-MFDPHSWSEDSYYEALAKAQKI 204 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17156.1 >prot_C-linearis_contig99.17156.1 ID=prot_C-linearis_contig99.17156.1|Name=mRNA_C-linearis_contig99.17156.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=485bp MDLPTAPTGTCTTLRPHPDNNIQLKWEAQQQVKPMSLLGLAGYDSDGSDGback to top mRNA from alignment at C-linearis_contig99:234598..237064+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17156.1 ID=mRNA_C-linearis_contig99.17156.1|Name=mRNA_C-linearis_contig99.17156.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2467bp|location=Sequence derived from alignment at C-linearis_contig99:234598..237064+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:234598..237064+ >mRNA_C-linearis_contig99.17156.1 ID=mRNA_C-linearis_contig99.17156.1|Name=mRNA_C-linearis_contig99.17156.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2910bp|location=Sequence derived from alignment at C-linearis_contig99:234598..237064+ (Chordaria linearis ClinC8C monoicous)back to top |