|
|
Homology
BLAST of mRNA_C-linearis_contig99.17153.1 vs. uniprot
Match: D7G7W2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W2_ECTSI) HSP 1 Score: 202 bits (514), Expect = 3.620e-58 Identity = 144/309 (46.60%), Postives = 165/309 (53.40%), Query Frame = 1 Query: 64 TNTRKRGAAFLLEKPLVSRLPFEVEQHFSSAFPPPKRVKPAPTRCWRDDNLDKDPC-TDVQSETSGMQEFRQ---REEV----------------AAADVEVEVGGEKGCWL-------TGGRDKLSGGGEHEEK-VRE-LRVAATGVPATGAAAGNSAMVQLKIDAMFAAPRIPPKETKDCSAHPNQKLELDLDAPPPGDSECAGATRKADRGMDVDRGVAGADXXXXXXXXXXGSSCYACRGSLGTGTEGGDVLCAFCDRVACQGCWQKCYACEVPHCSLCLAADYSSQFECFFCPPCNQDRRLESC 903
+ TRKRGA F+ EKPLVSRLPFEVE KR + A T P D+ TS E +Q RE + A A V +V E+GCW G RD +G EK RE L A ATG A +VQLKIDAMFA P +P +CS N EL D ECAG T + D MDVD GV GA+ G +CYACRG+LGT GGD+LC+FCDR ACQ CWQ+C ACEVPHCSLCLAADY+SQFEC+FCPPC QD RLESC
Sbjct: 4 STTRKRGAFFVFEKPLVSRLPFEVE--VDGGVLAKKRARIAATXXXXXXXXXSPPAHEDLDVNTSENFETKQWWTREALQERHRXXXXXXXXXXXAIAAVGADV--ERGCWSGGIWGAREGRRDTRAGTRPSLEKGERECLDEEAVSTAATGGAGAGRTLVQLKIDAMFAVPGLPCTPPSECSGR-NPDAEL-------CDGECAGTTSRGDGAMDVDVGV-GAEPREEG-----GPACYACRGALGT--AGGDILCSFCDRAACQACWQRCSACEVPHCSLCLAADYNSQFECYFCPPCYQDERLESC 292
BLAST of mRNA_C-linearis_contig99.17153.1 vs. uniprot
Match: A0A6H5LJI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJI1_9PHAE) HSP 1 Score: 193 bits (491), Expect = 9.360e-55 Identity = 136/311 (43.73%), Postives = 166/311 (53.38%), Query Frame = 1 Query: 64 TNTRKRGAAFLLEKPLVSRLPFEVEQHFSSAFPPPKRVKPAPTRCWRD---------DNLDKDPCTDVQSE----TSGMQEFRQREEV-------AAADVEVEVGGEKGCWLTG--------GRDKLSGGGEHEEKVREL--RVAATGVPATGAAAGNSAMVQLKIDAMFAAPRIPPKETKDCSAH-PNQKLELDLDAPPPGDSECAGATRKADRGMDVDRGVAGADXXXXXXXXXXGSSCYACRGSLGTGTEGGDVLCAFCDRVACQGCWQKCYACEVPHCSLCLAADYSSQFECFFCPPCNQDRRLESC 903
+ TRKRGA ++ EKPLVSRLPFE E KRV+ A T ++LD + +V+++ +QE + EE A A V +VG +GCWL G GRD G E+V A ATG A +VQLKIDAMFA P +P +CS N +L D ECA T + D MDVD GV GA+ G +CYACRG+LGT GGD+LC+FCDR ACQ CWQ+C AC VPHCSLCLAADY+SQFEC+FCP C QD+RLE C
Sbjct: 4 STTRKRGAFYVFEKPLVSRLPFEAEVDAGGLAR--KRVRIAATTTTETTRPPSPPAHEDLDVNTSENVETQHWWTREALQERHRGEEADSCSSSSAIAPVGADVG--RGCWLGGRWGAREGSGRDTRGGTRPSMERVEPECPDKQAVSTAATGGAGPGRTLVQLKIDAMFAVPGLPCTPPSECSGRIANAEL---------CDGECARTTCRGDGAMDVDVGV-GAEPGEEG-----GPACYACRGALGT--AGGDILCSFCDRAACQACWQRCSACGVPHCSLCLAADYNSQFECYFCPSCYQDKRLECC 293
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Siva |
| Ec32 ortholog | Ec-06_000100.1 |
| Exons | 2 |
| Model size | 1366 |
| Cds size | 849 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930847.2520814-UTR-C-linearis_contig99:220682..220739 | 1622930847.2520814-UTR-C-linearis_contig99:220682..220739 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig99 220683..220739 + |
| 1690881280.2045207-UTR-C-linearis_contig99:220682..220739 | 1690881280.2045207-UTR-C-linearis_contig99:220682..220739 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig99 220683..220739 + |
| 1622930847.3125653-UTR-C-linearis_contig99:222310..222770 | 1622930847.3125653-UTR-C-linearis_contig99:222310..222770 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig99 222311..222770 + |
| 1690881280.2395484-UTR-C-linearis_contig99:222310..222770 | 1690881280.2395484-UTR-C-linearis_contig99:222310..222770 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig99 222311..222770 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930847.2736037-CDS-C-linearis_contig99:220739..221133 | 1622930847.2736037-CDS-C-linearis_contig99:220739..221133 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 220740..221133 + |
| 1690881280.216459-CDS-C-linearis_contig99:220739..221133 | 1690881280.216459-CDS-C-linearis_contig99:220739..221133 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 220740..221133 + |
| 1622930847.2872646-CDS-C-linearis_contig99:221855..222310 | 1622930847.2872646-CDS-C-linearis_contig99:221855..222310 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 221856..222310 + |
| 1690881280.2272027-CDS-C-linearis_contig99:221855..222310 | 1690881280.2272027-CDS-C-linearis_contig99:221855..222310 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 221856..222310 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17153.1 >prot_C-linearis_contig99.17153.1 ID=prot_C-linearis_contig99.17153.1|Name=mRNA_C-linearis_contig99.17153.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=283bp
MATNTRKRGAAFLLEKPLVSRLPFEVEQHFSSAFPPPKRVKPAPTRCWRD
DNLDKDPCTDVQSETSGMQEFRQREEVAAADVEVEVGGEKGCWLTGGRDK
LSGGGEHEEKVRELRVAATGVPATGAAAGNSAMVQLKIDAMFAAPRIPPK
ETKDCSAHPNQKLELDLDAPPPGDSECAGATRKADRGMDVDRGVAGADAG
EGEGEGEGGSSCYACRGSLGTGTEGGDVLCAFCDRVACQGCWQKCYACEV
PHCSLCLAADYSSQFECFFCPPCNQDRRLESC* back to topmRNA from alignment at C-linearis_contig99:220683..222770+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig99.17153.1 ID=mRNA_C-linearis_contig99.17153.1|Name=mRNA_C-linearis_contig99.17153.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2088bp|location=Sequence derived from alignment at C-linearis_contig99:220683..222770+ (Chordaria linearis ClinC8C monoicous)
GTGTGTCGCACCAAGAACTCCCAGCTACGCCTACCTACCGACGAACGTGT
ATCGCTGATGGCGACGAACACGAGAAAGAGAGGGGCGGCGTTTCTGCTGG
AGAAGCCTCTGGTTTCGCGCCTCCCTTTCGAGGTGGAGCAGCATTTCTCG
AGCGCTTTCCCGCCTCCCAAGCGAGTGAAGCCAGCACCAACACGTTGTTG
GCGCGATGACAACCTTGACAAGGACCCTTGTACGGATGTTCAGAGCGAGA
CCAGCGGCATGCAGGAATTTCGCCAGAGAGAGGAGGTTGCTGCCGCTGAT
GTGGAAGTGGAAGTCGGTGGTGAAAAGGGCTGTTGGTTGACGGGAGGCAG
GGATAAACTTAGCGGCGGTGGCGAGCACGAGGAGAAGGTGCGAGAGCTAC
GCGTAGCAGCAACAGGGGTACCAGCAACAGGGGCAGCAGCGGGCAACTCA
GGTGAGCTTAGAGGAAGTGACGGAAAACACGGGTGATGTTTTGTGGAGGA
CGTCGGTACCGCGATTGCAGTCGAGGAAGGGAAAGAGAGCCATGCACAAC
AGACACTAGTGCCGTTTCCGGAGTATTTCAAAATTTCAGTTCAAATCCAT
CTCGCCGCTCGCCATCACTCAAGCAAAGCCCTGTCATAGAGGTCCAAAGG
AGAGCAGGGTCCGCCTGTCTTGGGTTGACCACAGACACGCCTAGTACGAG
ATAAGAGGAAAACACCAGAGTCTCTCGGGCATCTTATCTTATGCATTCTG
GTCGCCTTCTTTGTTCGGTGATGTGCTCTGCTCTTCAGAAACTCCGCTGC
TCTTCAAACTCAAAACTGACGAAGCCTGTGCGATTGGCGCAATCATACAT
AGCTCTCGGTTGTTGTGCTCAGCCCTGTTGCCGCCCGCAATTGATAAGCA
ATGTAGTTTACAGTTATACTAAGGCAAATATTTTTGCCGTTAAGTATCGT
TGATATCTGTTATTCTTACATCGCAACCAAGGTACACATCAGTAGTCTAC
CGATCTGGTTTGAAGAATTCCAAGCCTTGAGAACGGTGAGTCTACACCCA
CCCTTCGCGCGTGCGCCTATGATCTTTAACCGTTCCCCTTCTCTGTCTCT
GTCTCTCTGTCCCTATGTGTGTGTGTGTGTGTGTGTGTGCTTGTTCTGCG
TGCCTTGCTAGGACCCCGGCGAGCTATGGTGCAGCTCAAAATCGACGCCA
TGTTTGCGGCGCCCAGAATACCGCCGAAAGAAACTAAAGATTGCTCAGCC
CACCCCAACCAAAAATTAGAATTAGATTTGGACGCCCCCCCCCCAGGAGA
CTCCGAATGTGCTGGAGCTACGAGGAAAGCAGACCGGGGAATGGATGTTG
ACAGGGGGGTAGCTGGAGCAGATGCTGGGGAAGGGGAAGGGGAGGGGGAG
GGTGGATCCTCTTGCTATGCTTGCCGGGGCAGCCTAGGGACAGGAACAGA
GGGTGGGGACGTCTTGTGTGCGTTTTGCGATCGCGTCGCGTGCCAGGGGT
GCTGGCAGAAGTGTTACGCGTGCGAGGTGCCACACTGCAGCTTGTGTTTA
GCGGCGGACTATAGCTCGCAGTTCGAGTGCTTTTTCTGTCCGCCTTGCAA
TCAGGACCGGCGACTTGAGTCGTGCTAGGTGCTTTTTCTAGGAAGCAATA
TAGATCGGAGAGCGCTTTGTGGCAGGGTTAGGGGCTTCTGCTGCTGAAGG
GGAGGGGATGTGTTCCCAGGACCACGCAAGTTGTTGCGTTCGGGTGTCGA
AATCCACAAGTCAACGGTCACGATAGGCTGTCGGGTGTAGTACTCACAGT
TTTTTGTGAGTTGATAGCGTGAACTTGCAAGCTGTCCCCACTCCATGTAC
AGCAGTCTAAGGTCGTAAGCGCGAAAGATGGTTGTTGGTTGTTGTGTTTC
CCCAAAACAAATGTTGACGTTGCGTTTACTGAAGTTCAAGTCCGGGTCAA
CGCCGTTGCTATAAGGTGGATCCCTCCTGCGTTTGATCGTCCGTTCAGAC
AATAACAGTTTTTTTTTCTCGCTGTGATCGAGGGCGCTGTAGCCGCACGA
CTGGTGCACTGCTGTACATGGTACGCATCATGTGCGGT back to topCoding sequence (CDS) from alignment at C-linearis_contig99:220683..222770+ >mRNA_C-linearis_contig99.17153.1 ID=mRNA_C-linearis_contig99.17153.1|Name=mRNA_C-linearis_contig99.17153.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at C-linearis_contig99:220683..222770+ (Chordaria linearis ClinC8C monoicous)
ATGGCGACGAACACGAGAAAGAGAGGGGCGGCGTTTCTGCTGGAGAAGCC
TCTGGTTTCGCGCCTCCCTTTCGAGGTGGAGCAGCATTTCTCGAGCGCTT
TCCCGCCTCCCAAGCGAGTGAAGCCAGCACCAACACGTTGTTGGCGCGAT
GACAACCTTGACAAGGACCCTTGTACGGATGTTCAGAGCGAGACCAGCGG
CATGCAGGAATTTCGCCAGAGAGAGGAGGTTGCTGCCGCTGATGTGGAAG
TGGAAGTCGGTGGTGAAAAGGGCTGTTGGTTGACGGGAGGCAGGGATAAA
CTTAGCGGCGGTGGCGAGCACGAGGAGAAGGTGCGAGAGCTACGCGTAGC
AGCAACAGGGGTACCAGCAACAGGGGCAGCAGCGGGCAACTCAGATGGCG
ACGAACACGAGAAAGAGAGGGGCGGCGTTTCTGCTGGAGAAGCCTCTGGT
TTCGCGCCTCCCTTTCGAGGTGGAGCAGCATTTCTCGAGCGCTTTCCCGC
CTCCCAAGCGAGTGAAGCCAGCACCAACACGTTGTTGGCGCGATGACAAC
CTTGACAAGGACCCTTGTACGGATGTTCAGAGCGAGACCAGCGGCATGCA
GGAATTTCGCCAGAGAGAGGAGGTTGCTGCCGCTGATGTGGAAGTGGAAG
TCGGTGGTGAAAAGGGCTGTTGGTTGACGGGAGGCAGGGATAAACTTAGC
GGCGGTGGCGAGCACGAGGAGAAGGTGCGAGAGCTACGCGTAGCAGCAAC
AGGGGTACCAGCAACAGGGGCAGCAGCGGGCAACTCAGCTATGGTGCAGC
TCAAAATCGACGCCATGTTTGCGGCGCCCAGAATACCGCCGAAAGAAACT
AAAGATTGCTCAGCCCACCCCAACCAAAAATTAGAATTAGATTTGGACGC
CCCCCCCCCAGGAGACTCCGAATGTGCTGGAGCTACGAGGAAAGCAGACC
GGGGAATGGATGTTGACAGGGGGGTAGCTGGAGCAGATGCTGGGGAAGGG
GAAGGGGAGGGGGAGGGTGGATCCTCTTGCTATGCTTGCCGGGGCAGCCT
AGGGACAGGAACAGAGGGTGGGGACGTCTTGTGTGCGTTTTGCGATCGCG
TCGCGTGCCAGGGGTGCTGGCAGAAGTGTTACGCGTGCGAGGTGCCACAC
TGCAGCTTGTGTTTAGCGGCGGACTATAGCTCGCAGTTCGAGTGCTTTTT
CTGTCCGCCTTGCAATCAGGACCGGCGACTTGAGTCGTGCTAGCTATGGT
GCAGCTCAAAATCGACGCCATGTTTGCGGCGCCCAGAATACCGCCGAAAG
AAACTAAAGATTGCTCAGCCCACCCCAACCAAAAATTAGAATTAGATTTG
GACGCCCCCCCCCCAGGAGACTCCGAATGTGCTGGAGCTACGAGGAAAGC
AGACCGGGGAATGGATGTTGACAGGGGGGTAGCTGGAGCAGATGCTGGGG
AAGGGGAAGGGGAGGGGGAGGGTGGATCCTCTTGCTATGCTTGCCGGGGC
AGCCTAGGGACAGGAACAGAGGGTGGGGACGTCTTGTGTGCGTTTTGCGA
TCGCGTCGCGTGCCAGGGGTGCTGGCAGAAGTGTTACGCGTGCGAGGTGC
CACACTGCAGCTTGTGTTTAGCGGCGGACTATAGCTCGCAGTTCGAGTGC
TTTTTCTGTCCGCCTTGCAATCAGGACCGGCGACTTGAGTCGTGCTAG back to top
|