mRNA_C-linearis_contig99.17152.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_C-linearis_contig99.17152.1 vs. uniprot
Match: A0A6H5L318_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L318_9PHAE) HSP 1 Score: 253 bits (646), Expect = 2.530e-78 Identity = 143/196 (72.96%), Postives = 154/196 (78.57%), Query Frame = 1 Query: 103 AMGWRCRL--GRRAMSSSRFLLLLLAVLRTRSGVAFT---AVGRQR-ISNGMGKAGRLHCSSKGAYPASLRRSRGGSGGLSMDARSCAPEITDDTFEAEVLDEERPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGAGGKLKVLELCTDENPKTVAELKIRNIPTLMLFTERKSVMTVVGAVPKSALVSSIKKHMDL 672
A+ W CRL GR A + LLLLLA GV+F + RQR S G+G+ GRL SSKGAYP RR RG GL MDA SCAPEITDD+FEAEVLDE+RPVLVFFRAPWCGPCRMVGPIVDEVIA+HG KLKVLELCTDENPKTVAE KIRNIPTLMLF++RKSVMTVVGAVPKSALVSSIKKHMDL
Sbjct: 3 ALSWGCRLIAGRTAGEACSVLLLLLAC--ATPGVSFIQGRGMARQRTFSYGVGRIGRLQASSKGAYPPPSRRLRGR--GLCMDASSCAPEITDDSFEAEVLDEDRPVLVFFRAPWCGPCRMVGPIVDEVIADHGS---KLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMDL 191
BLAST of mRNA_C-linearis_contig99.17152.1 vs. uniprot
Match: D7G7W3_ECTSI (Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W3_ECTSI) HSP 1 Score: 214 bits (545), Expect = 2.020e-64 Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 Query: 328 MDARSCAPEITDDTFEAEVLDEERPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGAGGKLKVLELCTDENPKTVAELKIRNIPTLMLFTERKSVMTVVGAVPKSALVSSIKKHMDL 672
MDARSCAPEITDD+FEAEVLDE+RPVLVFFRA WCGPCRMVGPIVDEVIA+HGG KLKVLELCTDENPKTVAE KIRNIPTLMLF++RKSVMTVVGAVPKSALVSSIKKHMDL
Sbjct: 1 MDARSCAPEITDDSFEAEVLDEDRPVLVFFRAAWCGPCRMVGPIVDEVIADHGG---KLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKSVMTVVGAVPKSALVSSIKKHMDL 112
BLAST of mRNA_C-linearis_contig99.17152.1 vs. uniprot
Match: A0A524RKQ5_9CYAN (Thioredoxin n=2 Tax=Aphanocapsa feldmannii TaxID=192050 RepID=A0A524RKQ5_9CYAN) HSP 1 Score: 126 bits (316), Expect = 3.710e-31 Identity = 62/109 (56.88%), Postives = 79/109 (72.48%), Query Frame = 1 Query: 340 SCAPEITDDTFEAEVLDEERPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGAGGKLKVLELCTDENPKTVAELKIRNIPTLMLFTERKSVMTVVGAVPKSALVSSIKKHM 666
S A +TDD+FE EVL + PVL+ F APWCGPCRMV PIVDE+ +E G ++KV++L TDENP ++ IR+IPTLMLF + V TVVGAVPK+ L S+I KH+
Sbjct: 2 SSAAAVTDDSFEVEVLKSDIPVLIDFWAPWCGPCRMVAPIVDEIASEFAG---RIKVVKLNTDENPNVASQYGIRSIPTLMLFKAGQRVDTVVGAVPKNTLSSTITKHL 107
BLAST of mRNA_C-linearis_contig99.17152.1 vs. uniprot
Match: A0A6B1A1K2_9SYNE (Thioredoxin n=16 Tax=Synechococcus TaxID=1129 RepID=A0A6B1A1K2_9SYNE) HSP 1 Score: 124 bits (312), Expect = 1.360e-30 Identity = 63/109 (57.80%), Postives = 80/109 (73.39%), Query Frame = 1 Query: 340 SCAPEITDDTFEAEVLDEERPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGAGGKLKVLELCTDENPKTVAELKIRNIPTLMLFTERKSVMTVVGAVPKSALVSSIKKHM 666
S A +TD +FEA+VL E PVLV F APWCGPCRMV PI+DE+ AE GK+KV++L TDENP +L IR+IPTLM+F + + V TVVGAVPK+ L S+I K++
Sbjct: 2 SNAAPVTDASFEADVLKSEVPVLVDFWAPWCGPCRMVAPIIDEIAAE---LDGKIKVVKLNTDENPSVAGQLGIRSIPTLMVFKDGQRVDTVVGAVPKTTLSSTIAKYL 107
BLAST of mRNA_C-linearis_contig99.17152.1 vs. uniprot
Match: B1X5G8_PAUCH (Thioredoxin n=1 Tax=Paulinella chromatophora TaxID=39717 RepID=B1X5G8_PAUCH) HSP 1 Score: 124 bits (312), Expect = 1.530e-30 Identity = 63/113 (55.75%), Postives = 79/113 (69.91%), Query Frame = 1 Query: 328 MDARSCAPEITDDTFEAEVLDEERPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGAGGKLKVLELCTDENPKTVAELKIRNIPTLMLFTERKSVMTVVGAVPKSALVSSIKKHM 666
M+ S A ++TD +FE E+L PVLV F APWCGPCRM+ PIVDE+ E G KLKV +L TDENP ++ IR+IPTLM+F E + V TVVGAVPKS L +I+KH+
Sbjct: 1 MEKMSSAADVTDASFETEILMSNIPVLVDFWAPWCGPCRMLAPIVDEIAKEFEG---KLKVFKLNTDENPTIASQYGIRSIPTLMIFNEGQKVDTVVGAVPKSTLSVTIEKHV 110
BLAST of mRNA_C-linearis_contig99.17152.1 vs. uniprot
Match: A0A4D6BL56_9FLOR (Thioredoxin n=1 Tax=Balbiania investiens TaxID=111861 RepID=A0A4D6BL56_9FLOR) HSP 1 Score: 124 bits (311), Expect = 2.320e-30 Identity = 57/106 (53.77%), Postives = 78/106 (73.58%), Query Frame = 1 Query: 352 EITDDTFEAEVLDEERPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGAGGKLKVLELCTDENPKTVAELKIRNIPTLMLFTERKSVMTVVGAVPKSALVSSIKKHMD 669
++ D TF+ EVL+ + PVLV F APWCGPCRMV P+VDE+ E+ G+ +KV+ + TDENP T E IR+IPTLM+F + K V TV+GAVPKS L +++ K++D
Sbjct: 5 QVIDSTFQEEVLNHKLPVLVDFWAPWCGPCRMVAPVVDEIANEYNGS---IKVVTINTDENPSTATEYGIRSIPTLMIFKDGKRVDTVIGAVPKSTLATALNKYLD 107
BLAST of mRNA_C-linearis_contig99.17152.1 vs. uniprot
Match: K9UKE4_CHAP6 (Thioredoxin n=2 Tax=Chamaesiphon TaxID=217161 RepID=K9UKE4_CHAP6) HSP 1 Score: 124 bits (310), Expect = 2.600e-30 Identity = 59/109 (54.13%), Postives = 81/109 (74.31%), Query Frame = 1 Query: 340 SCAPEITDDTFEAEVLDEERPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGAGGKLKVLELCTDENPKTVAELKIRNIPTLMLFTERKSVMTVVGAVPKSALVSSIKKHM 666
S A E+TD +F+ +VLD E PVLV F APWCGPCRMVGP+VDE+ A++ G K+KV +L TD NP ++ IR+IPTLM+F + V TVVGAVPK+ L ++++K++
Sbjct: 2 SSAVEVTDGSFKEDVLDSEIPVLVDFWAPWCGPCRMVGPVVDEIAAQYEG---KIKVFKLNTDNNPNVASQYGIRSIPTLMIFKGGQKVDTVVGAVPKATLSNTVEKYL 107
BLAST of mRNA_C-linearis_contig99.17152.1 vs. uniprot
Match: UPI0019F25E60 (Thioredoxin n=1 Tax=Gloeomargaritaceae cyanobacterium C42_A2020_066 TaxID=2747801 RepID=UPI0019F25E60) HSP 1 Score: 123 bits (309), Expect = 3.600e-30 Identity = 59/109 (54.13%), Postives = 79/109 (72.48%), Query Frame = 1 Query: 340 SCAPEITDDTFEAEVLDEERPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGAGGKLKVLELCTDENPKTVAELKIRNIPTLMLFTERKSVMTVVGAVPKSALVSSIKKHM 666
S A +TD +F+ EVLD PVLV F APWCGPCR+V P+VDE+ E+ G K+KV++L TDENPK +E IR+IPTLM+F + V T+VGAVPK++L ++ KH+
Sbjct: 2 SAAAAVTDASFQGEVLDSAVPVLVDFWAPWCGPCRIVAPVVDEIAQEYAG---KVKVVKLNTDENPKVASEYGIRSIPTLMVFKGGQKVDTLVGAVPKTSLADTLNKHL 107
BLAST of mRNA_C-linearis_contig99.17152.1 vs. uniprot
Match: A0A1B7W1G5_APHFL (Thioredoxin n=5 Tax=Nostocales TaxID=1161 RepID=A0A1B7W1G5_APHFL) HSP 1 Score: 123 bits (309), Expect = 3.930e-30 Identity = 59/109 (54.13%), Postives = 81/109 (74.31%), Query Frame = 1 Query: 340 SCAPEITDDTFEAEVLDEERPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGAGGKLKVLELCTDENPKTVAELKIRNIPTLMLFTERKSVMTVVGAVPKSALVSSIKKHM 666
S A +TD TF+ EVLD PVLV F APWCGPCRMVGP+VDE+ ++G KLKV+++ TDENP+ ++ IR+IPTLM+F + + V VVGAVPK+ L ++++KH+
Sbjct: 2 SAAAPVTDSTFKEEVLDSIVPVLVDFWAPWCGPCRMVGPVVDEIADQYGE---KLKVVKVNTDENPQIASQYGIRSIPTLMIFKDGQKVDMVVGAVPKTTLSTTVEKHL 107
BLAST of mRNA_C-linearis_contig99.17152.1 vs. uniprot
Match: Q7NM87_GLOVI (Thioredoxin n=3 Tax=Gloeobacterales TaxID=307595 RepID=Q7NM87_GLOVI) HSP 1 Score: 123 bits (309), Expect = 3.930e-30 Identity = 58/111 (52.25%), Postives = 79/111 (71.17%), Query Frame = 1 Query: 340 SCAPEITDDTFEAEVLDEERPVLVFFRAPWCGPCRMVGPIVDEVIAEHGGAGGKLKVLELCTDENPKTVAELKIRNIPTLMLFTERKSVMTVVGAVPKSALVSSIKKHMDL 672
S A + D F+ EVLD E PVLV F APWCGPCRMV P+VDE+ ++ G KLKV+++ TDENP+ ++ IR+IPTLM+F V VVGAVPK+ L ++++KH+D+
Sbjct: 2 SAAVPVGDSNFKTEVLDSELPVLVDFWAPWCGPCRMVAPVVDEIAQQYSG---KLKVVKVNTDENPQVASQYGIRSIPTLMVFKSGSKVDMVVGAVPKTTLATTLEKHIDI 109 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17152.1 >prot_C-linearis_contig99.17152.1 ID=prot_C-linearis_contig99.17152.1|Name=mRNA_C-linearis_contig99.17152.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=190bp MGWRCRLGRRAMSSSRFLLLLLAVLRTRSGVAFTAVGRQRISNGMGKAGRback to top mRNA from alignment at C-linearis_contig99:217758..220563- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17152.1 ID=mRNA_C-linearis_contig99.17152.1|Name=mRNA_C-linearis_contig99.17152.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2806bp|location=Sequence derived from alignment at C-linearis_contig99:217758..220563- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:217758..220563- >mRNA_C-linearis_contig99.17152.1 ID=mRNA_C-linearis_contig99.17152.1|Name=mRNA_C-linearis_contig99.17152.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at C-linearis_contig99:217758..220563- (Chordaria linearis ClinC8C monoicous)back to top |