Homology
BLAST of mRNA_C-linearis_contig99.17148.1 vs. uniprot
Match:
A0A6H5KU43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU43_9PHAE)
HSP 1 Score: 158 bits (400), Expect = 6.130e-41
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1
Query: 1 LAVTDGVETKPRLGVVPDEESDDPVFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQRKMEAPFTKAQLFQ 243
LAVTDGVETKPRLGVVPDEESDDPVFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQRKMEAPFTKAQL Q
Sbjct: 69 LAVTDGVETKPRLGVVPDEESDDPVFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQRKMEAPFTKAQLSQ 149
BLAST of mRNA_C-linearis_contig99.17148.1 vs. uniprot
Match:
D7G6J6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J6_ECTSI)
HSP 1 Score: 90.9 bits (224), Expect = 7.200e-17
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 10 TDGVETKPRLGVVPDEESDDPVFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQRKMEAPFTKAQ 234
TDG E +P GV+P +++ P FQRA+R+DA+RA L TKQPYGD LHKFLAL S+ HWET Q KMEA F +AQ
Sbjct: 27 TDGNEDEPHPGVIPSKDA--PSFQRASRNDAIRATLRTKQPYGDELHKFLALGSLFHWETPAEQTKMEAAFPEAQ 99
BLAST of mRNA_C-linearis_contig99.17148.1 vs. uniprot
Match:
D7FWV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV7_ECTSI)
HSP 1 Score: 90.9 bits (224), Expect = 7.720e-17
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 10 TDGVETKPRLGVVPDEESDDPVFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQRKMEAPFTKAQ 234
TDG E +P GV+P +++ P FQRA+R+DA+RA L TKQPYGD LHKFLAL S+ HWET Q KMEA F +AQ
Sbjct: 27 TDGNEDEPHPGVIPSKDA--PSFQRASRNDAIRATLRTKQPYGDELHKFLALGSLFHWETPAEQTKMEAAFPEAQ 99
BLAST of mRNA_C-linearis_contig99.17148.1 vs. uniprot
Match:
A0A6H5L5E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E5_9PHAE)
HSP 1 Score: 86.3 bits (212), Expect = 3.010e-15
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 1
Query: 1 LAVTDGVETKPRLGVVPDEESDDPVFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQR----KMEAPFTKAQL 237
LA TDG+E+ P GV+ + P F A+ DDA+RA+LETKQPY DALHKFLAL S +HW+T E Q KMEA FT+A+L
Sbjct: 146 LAATDGIESDPHEGVLTGRKGR-PSFHYASTDDAIRAILETKQPYVDALHKFLALSSFLHWQTTERQANVDAKMEATFTEAEL 227
BLAST of mRNA_C-linearis_contig99.17148.1 vs. uniprot
Match:
D7FLR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR6_ECTSI)
HSP 1 Score: 82.0 bits (201), Expect = 8.640e-14
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 1
Query: 13 DGVETKPRLGVVPDEESDDPVFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQRKMEAP----FTKAQLFQQLVALL*RDGKRAAQDGT 297
DG+E+ P GV+PD V Q AT +DA+ A+LETKQPYGD LHKFLAL S W+T QRKM+A FT+ +LFQ+ + G ++ G
Sbjct: 137 DGIESDPHEGVLPDRNGAGSV-QYATEEDAISAILETKQPYGDGLHKFLALSSFFRWQTPAKQRKMDAEMKATFTEGELFQRSSLFIDETGNALSKIGV 234
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17148.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 5
0 1 Expect = 6.13e-41 / Id = 98.77 Expect = 7.20e-17 / Id = 61.33 Expect = 7.72e-17 / Id = 61.33 Expect = 3.01e-15 / Id = 56.63 Expect = 8.64e-14 / Id = 46.46 Sequence A0A6H5KU43_9PHAE D7G6J6_ECTSI D7FWV7_ECTSI A0A6H5L5E5_9PHAE D7FLR6_ECTSI back to top
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930846.4240618-UTR-C-linearis_contig99:120415..120723 1622930846.4240618-UTR-C-linearis_contig99:120415..120723 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 120416..120723 + 1690881279.7787468-UTR-C-linearis_contig99:120415..120723 1690881279.7787468-UTR-C-linearis_contig99:120415..120723 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 120416..120723 + 1622930846.474396-UTR-C-linearis_contig99:120978..121289 1622930846.474396-UTR-C-linearis_contig99:120978..121289 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 120979..121289 + 1690881279.8000498-UTR-C-linearis_contig99:120978..121289 1690881279.8000498-UTR-C-linearis_contig99:120978..121289 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig99 120979..121289 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930846.445422-CDS-C-linearis_contig99:120723..120978 1622930846.445422-CDS-C-linearis_contig99:120723..120978 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 120724..120978 + 1690881279.7884705-CDS-C-linearis_contig99:120723..120978 1690881279.7884705-CDS-C-linearis_contig99:120723..120978 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig99 120724..120978 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17148.1
>prot_C-linearis_contig99.17148.1 ID=prot_C-linearis_contig99.17148.1|Name=mRNA_C-linearis_contig99.17148.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=85bp
MTPEPGRRWTTTAECSRVTAATFGGGTIGGSQNGDSGEEGSRRTVAIGSA back to top mRNA from alignment at C-linearis_contig99:120416..121289+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17148.1 ID=mRNA_C-linearis_contig99.17148.1|Name=mRNA_C-linearis_contig99.17148.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=874bp|location=Sequence derived from alignment at C-linearis_contig99:120416..121289+ (Chordaria linearis ClinC8C monoicous)CTCGCAGTGACAGACGGCGTCGAGACCAAACCACGCCTTGGTGTCGTGCC
CGACGAGGAGAGCGACGACCCAGTGTTCCAGCGCGCTACCCGTGACGACG
CAGTCCGGGCGCTATTGGAAACAAAGCAACCGTATGGCGACGCTCTTCAC
AAGTTCCTAGCCCTCGTCAGCATGATCCACTGGGAGACGGCCGAGATGCA
GCGCAAGATGGAGGCCCCGTTTACCAAGGCTCAACTCTTCCAGCAACTCG
TCGCTCTTCTTTGACGAGACGGGAAACGCGCTGCCCAAGATGGGACTTAG
AGTGGTGC ATGACACCGGAGCCGGGGCGGCGGTGGACTACGACGGCGGAG
TGCAGTCGGGTGACTGCAGCAACTTTCGGTGGAGGGACCATCGGAGGCTC
CCAGAACGGGGATAGCGGCGAGGAGGGGTCGAGACGAACGGTTGCCATTG
GTTCCGCGGAGGACGAGCGGCTGAAAGCCCCCGACGTGGCCGCTACCACC
GTAACCGAGAGTACGATGCTCGTCACCCTGTACGACGGGGTAGTGCTCGC
CGCGCGCGGGTAG GTCAGGAGCTCCTTGTGCGTTTTTGGTGTGCAAAGCT
ATCGCTGACCCTTGGGTGCCGTGGTGTTTTTTTTTTGTAAGTCTCCCTAG
TTCGGCGCACATCCACGCGACAGCAACCGTCTGTACTATAAAACCCCCAA
GCCTCGTCTCAAGTGCCCCGCCGATACTTTTTTTGTTGTCTTTTCCGTCG
GCGCCTTAGCACACCCCTCACCAGGATCGGGCCATGGTTCTACGAGAACG
TGGTCGGAGTGGCATTGGTCGGGCCCAAGAAGAAGCTATCCCTCGTGAAG
ACGAGGGGGGAACTACCTCCGGCG back to top Coding sequence (CDS) from alignment at C-linearis_contig99:120416..121289+
>mRNA_C-linearis_contig99.17148.1 ID=mRNA_C-linearis_contig99.17148.1|Name=mRNA_C-linearis_contig99.17148.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at C-linearis_contig99:120416..121289+ (Chordaria linearis ClinC8C monoicous) back to top