mRNA_C-linearis_contig99.17146.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17146.1
Unique NamemRNA_C-linearis_contig99.17146.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:118602..119178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size577
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17146.1prot_C-linearis_contig99.17146.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 118742..119089 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.8329499-UTR-C-linearis_contig99:118601..1187411622930845.8329499-UTR-C-linearis_contig99:118601..118741Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 118602..118741 +
1690881279.5535436-UTR-C-linearis_contig99:118601..1187411690881279.5535436-UTR-C-linearis_contig99:118601..118741Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 118602..118741 +
1622930845.8899188-UTR-C-linearis_contig99:119089..1191781622930845.8899188-UTR-C-linearis_contig99:119089..119178Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 119090..119178 +
1690881279.5799248-UTR-C-linearis_contig99:119089..1191781690881279.5799248-UTR-C-linearis_contig99:119089..119178Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 119090..119178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.8756251-CDS-C-linearis_contig99:118741..1190891622930845.8756251-CDS-C-linearis_contig99:118741..119089Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 118742..119089 +
1690881279.5688305-CDS-C-linearis_contig99:118741..1190891690881279.5688305-CDS-C-linearis_contig99:118741..119089Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 118742..119089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17146.1

>prot_C-linearis_contig99.17146.1 ID=prot_C-linearis_contig99.17146.1|Name=mRNA_C-linearis_contig99.17146.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=116bp
MCINSKQPLTSTPSLFAWSVLDKSCRKMAFTKKQLEESAKDTPSVSKFFN
VSILRYSKRGHIHACIAQPVLLCTQTSRCHPPWHHIPGTIHLIRIEDDTA
VRLSDAVTTVQPSAY*
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mRNA from alignment at C-linearis_contig99:118602..119178+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17146.1 ID=mRNA_C-linearis_contig99.17146.1|Name=mRNA_C-linearis_contig99.17146.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=577bp|location=Sequence derived from alignment at C-linearis_contig99:118602..119178+ (Chordaria linearis ClinC8C monoicous)
CTGTGTGATACAATCTTGGTACCGGAGTTCATGACCCAGACTGTAGGCTT
TCAGCGTCGTCTCAGCCTTAGCATAAACACGGACAGCTAAACTGGGATTG
ATGTGCCAGCCGTTGTCAACAGGGTTAGACACTGACCCCCATGTGCATAA
ACTCGAAACAACCTCTCACCTCTACGCCTTCACTATTCGCCTGGTCTGTG
CTTGACAAATCTTGTAGAAAGATGGCGTTTACCAAGAAGCAACTAGAGGA
ATCCGCCAAGGACACACCTAGTGTCTCCAAGTTCTTCAATGTGAGTATTT
TGAGGTACAGCAAAAGAGGCCATATACATGCATGCATAGCACAGCCCGTG
TTACTTTGTACACAAACAAGTCGGTGCCACCCCCCATGGCACCACATCCC
CGGCACTATCCACTTGATCCGCATAGAAGATGACACAGCAGTGCGCCTTT
CGGACGCTGTCACCACCGTACAGCCTTCCGCTTATTAATGGCACCATCCA
GCAACACCCGAAGCTCCCGTATTACTACTGATGGTTGTTTGTTCGCTTAA
CTTCCCACGGGGTCGTCATTGTTTCAC
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Coding sequence (CDS) from alignment at C-linearis_contig99:118602..119178+

>mRNA_C-linearis_contig99.17146.1 ID=mRNA_C-linearis_contig99.17146.1|Name=mRNA_C-linearis_contig99.17146.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at C-linearis_contig99:118602..119178+ (Chordaria linearis ClinC8C monoicous)
ATGTGCATAAACTCGAAACAACCTCTCACCTCTACGCCTTCACTATTCGC
CTGGTCTGTGCTTGACAAATCTTGTAGAAAGATGGCGTTTACCAAGAAGC
AACTAGAGGAATCCGCCAAGGACACACCTAGTGTCTCCAAGTTCTTCAAT
GTGAGTATTTTGAGGTACAGCAAAAGAGGCCATATACATGCATGCATAGC
ACAGCCCGTGTTACTTTGTACACAAACAAGTCGGTGCCACCCCCCATGGC
ACCACATCCCCGGCACTATCCACTTGATCCGCATAGAAGATGACACAGCA
GTGCGCCTTTCGGACGCTGTCACCACCGTACAGCCTTCCGCTTATTAAAT
GTGCATAAACTCGAAACAACCTCTCACCTCTACGCCTTCACTATTCGCCT
GGTCTGTGCTTGACAAATCTTGTAGAAAGATGGCGTTTACCAAGAAGCAA
CTAGAGGAATCCGCCAAGGACACACCTAGTGTCTCCAAGTTCTTCAATGT
GAGTATTTTGAGGTACAGCAAAAGAGGCCATATACATGCATGCATAGCAC
AGCCCGTGTTACTTTGTACACAAACAAGTCGGTGCCACCCCCCATGGCAC
CACATCCCCGGCACTATCCACTTGATCCGCATAGAAGATGACACAGCAGT
GCGCCTTTCGGACGCTGTCACCACCGTACAGCCTTCCGCTTATTAA
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