Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 577 |
| Cds size | 348 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930845.8329499-UTR-C-linearis_contig99:118601..118741 | 1622930845.8329499-UTR-C-linearis_contig99:118601..118741 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig99 118602..118741 + |
| 1690881279.5535436-UTR-C-linearis_contig99:118601..118741 | 1690881279.5535436-UTR-C-linearis_contig99:118601..118741 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig99 118602..118741 + |
| 1622930845.8899188-UTR-C-linearis_contig99:119089..119178 | 1622930845.8899188-UTR-C-linearis_contig99:119089..119178 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig99 119090..119178 + |
| 1690881279.5799248-UTR-C-linearis_contig99:119089..119178 | 1690881279.5799248-UTR-C-linearis_contig99:119089..119178 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig99 119090..119178 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930845.8756251-CDS-C-linearis_contig99:118741..119089 | 1622930845.8756251-CDS-C-linearis_contig99:118741..119089 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 118742..119089 + |
| 1690881279.5688305-CDS-C-linearis_contig99:118741..119089 | 1690881279.5688305-CDS-C-linearis_contig99:118741..119089 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 118742..119089 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17146.1 >prot_C-linearis_contig99.17146.1 ID=prot_C-linearis_contig99.17146.1|Name=mRNA_C-linearis_contig99.17146.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=116bp
MCINSKQPLTSTPSLFAWSVLDKSCRKMAFTKKQLEESAKDTPSVSKFFN
VSILRYSKRGHIHACIAQPVLLCTQTSRCHPPWHHIPGTIHLIRIEDDTA
VRLSDAVTTVQPSAY* back to topmRNA from alignment at C-linearis_contig99:118602..119178+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig99.17146.1 ID=mRNA_C-linearis_contig99.17146.1|Name=mRNA_C-linearis_contig99.17146.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=577bp|location=Sequence derived from alignment at C-linearis_contig99:118602..119178+ (Chordaria linearis ClinC8C monoicous)
CTGTGTGATACAATCTTGGTACCGGAGTTCATGACCCAGACTGTAGGCTT
TCAGCGTCGTCTCAGCCTTAGCATAAACACGGACAGCTAAACTGGGATTG
ATGTGCCAGCCGTTGTCAACAGGGTTAGACACTGACCCCCATGTGCATAA
ACTCGAAACAACCTCTCACCTCTACGCCTTCACTATTCGCCTGGTCTGTG
CTTGACAAATCTTGTAGAAAGATGGCGTTTACCAAGAAGCAACTAGAGGA
ATCCGCCAAGGACACACCTAGTGTCTCCAAGTTCTTCAATGTGAGTATTT
TGAGGTACAGCAAAAGAGGCCATATACATGCATGCATAGCACAGCCCGTG
TTACTTTGTACACAAACAAGTCGGTGCCACCCCCCATGGCACCACATCCC
CGGCACTATCCACTTGATCCGCATAGAAGATGACACAGCAGTGCGCCTTT
CGGACGCTGTCACCACCGTACAGCCTTCCGCTTATTAATGGCACCATCCA
GCAACACCCGAAGCTCCCGTATTACTACTGATGGTTGTTTGTTCGCTTAA
CTTCCCACGGGGTCGTCATTGTTTCAC back to topCoding sequence (CDS) from alignment at C-linearis_contig99:118602..119178+ >mRNA_C-linearis_contig99.17146.1 ID=mRNA_C-linearis_contig99.17146.1|Name=mRNA_C-linearis_contig99.17146.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at C-linearis_contig99:118602..119178+ (Chordaria linearis ClinC8C monoicous)
ATGTGCATAAACTCGAAACAACCTCTCACCTCTACGCCTTCACTATTCGC
CTGGTCTGTGCTTGACAAATCTTGTAGAAAGATGGCGTTTACCAAGAAGC
AACTAGAGGAATCCGCCAAGGACACACCTAGTGTCTCCAAGTTCTTCAAT
GTGAGTATTTTGAGGTACAGCAAAAGAGGCCATATACATGCATGCATAGC
ACAGCCCGTGTTACTTTGTACACAAACAAGTCGGTGCCACCCCCCATGGC
ACCACATCCCCGGCACTATCCACTTGATCCGCATAGAAGATGACACAGCA
GTGCGCCTTTCGGACGCTGTCACCACCGTACAGCCTTCCGCTTATTAAAT
GTGCATAAACTCGAAACAACCTCTCACCTCTACGCCTTCACTATTCGCCT
GGTCTGTGCTTGACAAATCTTGTAGAAAGATGGCGTTTACCAAGAAGCAA
CTAGAGGAATCCGCCAAGGACACACCTAGTGTCTCCAAGTTCTTCAATGT
GAGTATTTTGAGGTACAGCAAAAGAGGCCATATACATGCATGCATAGCAC
AGCCCGTGTTACTTTGTACACAAACAAGTCGGTGCCACCCCCCATGGCAC
CACATCCCCGGCACTATCCACTTGATCCGCATAGAAGATGACACAGCAGT
GCGCCTTTCGGACGCTGTCACCACCGTACAGCCTTCCGCTTATTAA back to top
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