|
|
Homology
BLAST of mRNA_C-linearis_contig99.17145.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE) HSP 1 Score: 130 bits (326), Expect = 2.620e-33 Identity = 63/106 (59.43%), Postives = 81/106 (76.42%), Query Frame = -2 Query: 3 GSDLGELESSTVSEAVPLDELTPSAAGLASMQGVQVPSMPVSTSFERTKFDGMWMHFTNPDSRQSFVDFDAFALEWNKSVSAMEEGKSPVVPIFRKTAASLKSHWK 320
G++ ++ + EAVPL ELT SAA LA MQGVQVP MPV+++ E+ KF MW+ F +P RQ+ +DFD+FALEWNK+VS MEEGKS V+PIFRKTA LK++WK
Sbjct: 402 GAENSGIDPAFADEAVPLPELTGSAARLAKMQGVQVPHMPVTSAAEKAKFGDMWLEFVDPAGRQTLLDFDSFALEWNKAVSLMEEGKSAVIPIFRKTAGHLKAYWK 507
BLAST of mRNA_C-linearis_contig99.17145.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE) HSP 1 Score: 130 bits (326), Expect = 9.210e-33 Identity = 63/106 (59.43%), Postives = 81/106 (76.42%), Query Frame = -2 Query: 3 GSDLGELESSTVSEAVPLDELTPSAAGLASMQGVQVPSMPVSTSFERTKFDGMWMHFTNPDSRQSFVDFDAFALEWNKSVSAMEEGKSPVVPIFRKTAASLKSHWK 320
G++ ++ + EAVPL ELT SAA LA MQGVQVP MPV+++ E+ KF MW+ F +P RQ+ +DFD+FALEWNK+VS MEEGKS V+PIFRKTA LK++WK
Sbjct: 975 GAENSGIDPAFADEAVPLPELTGSAARLAKMQGVQVPHMPVTSAAEKAKFGDMWLEFVDPAGRQTLLDFDSFALEWNKAVSLMEEGKSAVIPIFRKTAGHLKAYWK 1080
BLAST of mRNA_C-linearis_contig99.17145.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE) HSP 1 Score: 52.8 bits (125), Expect = 1.190e-5 Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = -2 Query: 171 GSDLGELESSTVSEAVPLDELTPSAAGLASMQGVQVPSMPVSTSFERTKF 320
G++ ++ ++V EAVPL ELT SAA LA MQGVQVP MPV+++ E +KF
Sbjct: 577 GAENSSMDPASVEEAVPLPELTGSAARLAKMQGVQVPHMPVTSAAENSKF 626
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 338 |
| Cds size | 336 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930845.746225-CDS-C-linearis_contig99:116145..116481 | 1622930845.746225-CDS-C-linearis_contig99:116145..116481 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 116146..116481 + |
| 1690881279.5395906-CDS-C-linearis_contig99:116145..116481 | 1690881279.5395906-CDS-C-linearis_contig99:116145..116481 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 116146..116481 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17145.1 >prot_C-linearis_contig99.17145.1 ID=prot_C-linearis_contig99.17145.1|Name=mRNA_C-linearis_contig99.17145.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=112bp
FFQCDFKDAAVFLKMGTTGLFPSSMADTLLFHSSAKASKSTKDCRESGFV
KCIHMPSNLVRSKLVLTGMEGTCTPCMLARPAADGVSSSSGTASLTVLLS
SSPKSLPSGDSD back to topmRNA from alignment at C-linearis_contig99:116146..116482+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig99.17145.1 ID=mRNA_C-linearis_contig99.17145.1|Name=mRNA_C-linearis_contig99.17145.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=337bp|location=Sequence derived from alignment at C-linearis_contig99:116146..116482+ (Chordaria linearis ClinC8C monoicous)
TTTTTCCAGTGCGACTTCAAGGATGCGGCCGTCTTCCTGAAGATGGGGAC
CACCGGGCTCTTCCCCTCTTCCATGGCAGATACGCTCTTGTTCCACTCCA
GCGCAAAGGCGTCGAAGTCGACAAAAGACTGCCGCGAATCCGGATTCGTG
AAATGCATCCACATGCCATCAAACTTGGTGCGTTCAAAGCTAGTGCTGAC
GGGCATGGAAGGCACCTGCACTCCCTGCATGCTTGCGAGGCCAGCCGCCG
ACGGTGTCAGCTCGTCAAGCGGCACGGCCTCGCTGACTGTACTGCTCTCA
AGCTCGCCCAAATCGCTTCCCTCCGGCGATTCTGACG back to topCoding sequence (CDS) from alignment at C-linearis_contig99:116146..116482+ >mRNA_C-linearis_contig99.17145.1 ID=mRNA_C-linearis_contig99.17145.1|Name=mRNA_C-linearis_contig99.17145.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at C-linearis_contig99:116146..116482+ (Chordaria linearis ClinC8C monoicous)
TTTTTCCAGTGCGACTTCAAGGATGCGGCCGTCTTCCTGAAGATGGGGAC
CACCGGGCTCTTCCCCTCTTCCATGGCAGATACGCTCTTGTTCCACTCCA
GCGCAAAGGCGTCGAAGTCGACAAAAGACTGCCGCGAATCCGGATTCGTG
AAATGCATCCACATGCCATCAAACTTGGTGCGTTCAAAGCTAGTGCTGAC
GGGCATGGAAGGCACCTGCACTCCCTGCATGCTTGCGAGGCCAGCCGCCG
ACGGTGTCAGCTCGTCAAGCGGCACGGCCTCGCTGACTGTACTGCTCTCA
AGCTCGCCCAAATCGCTTCCCTCCGGCGATTCTGACTTTTTCCAGTGCGA
CTTCAAGGATGCGGCCGTCTTCCTGAAGATGGGGACCACCGGGCTCTTCC
CCTCTTCCATGGCAGATACGCTCTTGTTCCACTCCAGCGCAAAGGCGTCG
AAGTCGACAAAAGACTGCCGCGAATCCGGATTCGTGAAATGCATCCACAT
GCCATCAAACTTGGTGCGTTCAAAGCTAGTGCTGACGGGCATGGAAGGCA
CCTGCACTCCCTGCATGCTTGCGAGGCCAGCCGCCGACGGTGTCAGCTCG
TCAAGCGGCACGGCCTCGCTGACTGTACTGCTCTCAAGCTCGCCCAAATC
GCTTCCCTCCGGCGATTCTGAC back to top
|