mRNA_C-linearis_contig98.17141.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig98.17141.1 vs. uniprot
Match: D7FMQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMQ8_ECTSI) HSP 1 Score: 521 bits (1341), Expect = 3.330e-179 Identity = 273/344 (79.36%), Postives = 286/344 (83.14%), Query Frame = 3 Query: 57 MIQELNFSAGAGPRALQQQHQQPANPTLPRAASGLALAFFWGFGGGFAGLPN-KIGAALPRVGAVVGMAVTEDALFRSIEVMQKSAKKPWGKFLDAGTGTHSLKWINTLETEGFTAVTADPQFADTTRKEIGFKVKAPDEIVVGNWRDEKFLEGRLFDTVLMDYLVGAIDGFAPYYQDQVFERLRRHVAPGGTIYLVGMQPLPDHPGGAAELVCEAARLRDSCILLAGHRPYREYPLDWITRQMKRSGMVVTAAKKMPVLYAPHTVKRQLDVASRKLPIIAVTDPKLSTALEKHISDLGGRVRKELAGAGERVEVGFDYVVAAELAPEP----EERSSVSAAGE 1073
M+Q S QQQ QQ RAA LAFFW FG F G P KI AA PR+ GMA TEDALFRSIE MQK+A KPWGKFLDAGTGTHSLKWINTL TEGFTAVTADPQFA+ TRKEIGFKVK PDEIVVGNWRDEKFLEGR+FDTVL DYLVGAIDGFAPYYQDQVFERL+RHVAPGG IYLVGMQPLPDHPGGAAELVCEAARLRDSCILLAGHRPYREYPLDWITRQMK+SGMVVT+AKKMPVLYAPHTVKRQLDVASRKLPIIA TDPKL+ ALE+HISDL GRVRKELAGAG RVEVGFDYVVAAELA EP E + +V+ GE
Sbjct: 1 MVQAFELSVAGCRVPQQQQQQQHFTSRFGRAAK---LAFFWSFG--FGGFPQQKIRAAFPRL----GMAATEDALFRSIEGMQKAANKPWGKFLDAGTGTHSLKWINTLNTEGFTAVTADPQFAENTRKEIGFKVKTPDEIVVGNWRDEKFLEGRVFDTVLADYLVGAIDGFAPYYQDQVFERLKRHVAPGGRIYLVGMQPLPDHPGGAAELVCEAARLRDSCILLAGHRPYREYPLDWITRQMKKSGMVVTSAKKMPVLYAPHTVKRQLDVASRKLPIIAATDPKLAAALERHISDLDGRVRKELAGAGGRVEVGFDYVVAAELAREPAAGAERKEAVTPEGE 335
BLAST of mRNA_C-linearis_contig98.17141.1 vs. uniprot
Match: A0A835Z2H5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2H5_9STRA) HSP 1 Score: 306 bits (784), Expect = 2.350e-96 Identity = 144/283 (50.88%), Postives = 207/283 (73.14%), Query Frame = 3 Query: 261 VTEDALFRSIEVMQKSAKKPWGKFLDAGTGTHSLKWINTLETEGFTAVTADPQFADTTRKEIGF------KVKAPDEIVVGNWRDEKFLEGRLFDTVLMDYLVGAIDGFAPYYQDQVFERLRRHVAPGGTIYLVGMQPLPDHPGGAAELVCEAARLRDSCILLAGHRPYREYPLDWITRQMKRSGMVVTAAKKMPVLYAPHTVKRQLDVASRKLPIIAVTDPKLSTALEKHISDLGGRVRKELAGA-GERVEVGFDYVVAAELAPEPEERSSVSAAGESKEGD 1088
+ +DALF+++ +Q ++ KPWG+FLD+GTGTHSL+W++TL T G+TAVTAD QFA + E+ + I+VGNW+DE F EG ++DT+L DYL+GAIDGF+PYYQD++F+RL+RH+APGGT++++GMQP+PD A +V E ARLRD+CILLAGHRPYRE+PLDW+ R +K++G VT +++MP+L++ +++RQLDVASRKLP D L+ A+E+HI+ +G R+ + G R+++GFDYVVAAE P P ++ S+ GD
Sbjct: 1 MVDDALFKAVTGLQTASGKPWGRFLDSGTGTHSLRWVHTLPTAGWTAVTADAQFAANMQAELQLTDAERAQASTAACIIVGNWQDESFQEGEIYDTILADYLIGAIDGFSPYYQDEIFDRLKRHLAPGGTLFIIGMQPVPDSAPHPANIVTEVARLRDACILLAGHRPYREFPLDWVERHLKKAGFAVTLSRRMPILHSEGSIRRQLDVASRKLPYFE--DRDLAAAMERHIAAVGARIVSTCSCVRGGRIQLGFDYVVAAEPLPRPPGAAAASSENGRAAGD 281
BLAST of mRNA_C-linearis_contig98.17141.1 vs. uniprot
Match: A0A7R9U2U4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2U4_9STRA) HSP 1 Score: 261 bits (667), Expect = 4.570e-78 Identity = 132/259 (50.97%), Postives = 176/259 (67.95%), Query Frame = 3 Query: 270 DALFRSIEVMQKSAKKPWGKFLDAGTGTHSLKWINTLETEGFTAVTADPQFADTTRKEIGFKVKAPDEIVVGNWRDEKFLEGRLFDTVLMDYLVGAIDGFAPYYQDQVFERLRRHVAPGGTIYLVGMQPLPDHPGGAAELVCEAARLRDSCILLAGHRPYREYPLDWITRQMKRSGMVVTAAKKMPVLYAPHTVKRQLDVASRKLPII-----AVTDPKLSTA---LEKHISDLGGRVRKELAG--AGERVEVGFDYVV 1016
DA+F SIE MQ +PWG+FLDAGTG HSL WI+T+ETE +TAVTA + A +R + ++ D +VVGNW D+ FLEG FD +L DYL+GA+DGF+PY QD +FERL+RH+A G +Y+VG++P+PD GAA+++CE R+RD+ ILLAGHR YREYP++WI RQ +RSG V + K P+LY+ ++ RQLDV RKLP+I A T LS A L+ I D + +G A R+ GFDYV+
Sbjct: 68 DAIFDSIERMQARIGRPWGRFLDAGTGRHSLHWISTIETEAWTAVTAAQEMAVQSRDSVRGAMREQDRVVVGNWDDDTFLEGETFDVILADYLIGAMDGFSPYKQDLIFERLQRHLAEDGILYIVGLEPIPDSGAGAADVICEVRRMRDAMILLAGHRCYREYPIEWIYRQCRRSGFEVMESLKFPILYSRASITRQLDVGRRKLPLIRSRHGAATALALSQACDALQHRIDDATNFSKVSPSGVTADTRIRFGFDYVM 326
BLAST of mRNA_C-linearis_contig98.17141.1 vs. uniprot
Match: A0A7S1UJN4_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJN4_9STRA) HSP 1 Score: 253 bits (647), Expect = 4.980e-75 Identity = 125/261 (47.89%), Postives = 173/261 (66.28%), Query Frame = 3 Query: 270 DALFRSIEVMQKSAKKPWGKFLDAGTGTHSLKWI-NTLETEGFTAVTADPQFADTTRKEIGFKVKAPDEIVVGNWRDEKFLEGRLFDTVLMDYLVGAIDGFAPYYQDQVFERLRRHVAPGGTIYLVGMQPLPDHPGGAAELVCEAARLRDSCILLAGHRPYREYPLDWITRQMKRSGMVVTAAKKMPVLYAPHTVKRQLDVASRKLPII--------AVTDPKLSTALEKHISDLGGRVRKELAGA--GERVEVGFDYVVA 1019
DA+F IE MQ ++PWG+FLDAGTG+HSL+WI +T+ +TAVTA + A +R + ++ D++V+GNW DE FLEG ++D +L DYL+GA+DGF+PY QD +FERL+RH+AP G IY+VG++P+PD GAA+++CE RLRD+ ILLAGHR YREYPL WI RQ +R+G V + P+LY+ ++ RQLDV RKLP I A+ + L++ I D + + R+ GFDYVVA
Sbjct: 73 DAIFDCIERMQMQQQRPWGRFLDAGTGSHSLQWIARNFDTDSWTAVTAAEEMAKQSRDSVKGHMREQDKVVIGNWDDETFLEGEVYDVILADYLIGAMDGFSPYTQDLIFERLKRHLAPDGVIYIVGLEPIPDTAEGAADVICEVRRLRDAMILLAGHRCYREYPLTWIYRQCRRAGFEVLESTTFPILYSRASITRQLDVGRRKLPYIRAKHGSSTAIAMGQACEMLQRRIDDATNHNTSKTSAVKTDTRIRFGFDYVVA 333
BLAST of mRNA_C-linearis_contig98.17141.1 vs. uniprot
Match: A0A7S1Y0Y4_9STRA (Hypothetical protein n=6 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0Y4_9STRA) HSP 1 Score: 253 bits (647), Expect = 1.070e-74 Identity = 125/261 (47.89%), Postives = 173/261 (66.28%), Query Frame = 3 Query: 270 DALFRSIEVMQKSAKKPWGKFLDAGTGTHSLKWI-NTLETEGFTAVTADPQFADTTRKEIGFKVKAPDEIVVGNWRDEKFLEGRLFDTVLMDYLVGAIDGFAPYYQDQVFERLRRHVAPGGTIYLVGMQPLPDHPGGAAELVCEAARLRDSCILLAGHRPYREYPLDWITRQMKRSGMVVTAAKKMPVLYAPHTVKRQLDVASRKLPII--------AVTDPKLSTALEKHISDLGGRVRKELAGA--GERVEVGFDYVVA 1019
DA+F IE MQ ++PWG+FLDAGTG+HSL+WI +T+ +TAVTA + A +R + ++ D++V+GNW DE FLEG ++D +L DYL+GA+DGF+PY QD +FERL+RH+AP G IY+VG++P+PD GAA+++CE RLRD+ ILLAGHR YREYPL WI RQ +R+G V + P+LY+ ++ RQLDV RKLP I A+ + L++ I D + + R+ GFDYVVA
Sbjct: 99 DAIFDCIERMQMQQQRPWGRFLDAGTGSHSLQWIARNFDTDSWTAVTAAEEMAKQSRDSVKGHMREQDKVVIGNWDDETFLEGEVYDVILADYLIGAMDGFSPYTQDLIFERLKRHLAPDGVIYIVGLEPIPDTAEGAADVICEVRRLRDAMILLAGHRCYREYPLTWIYRQCRRAGFEVLESTTFPILYSRASITRQLDVGRRKLPYIRAKHGSSTAIAMGQACEMLQRRIDDATNHNTSKTSAVKTDTRIRFGFDYVVA 359
BLAST of mRNA_C-linearis_contig98.17141.1 vs. uniprot
Match: A0A7S1UJN8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJN8_9STRA) HSP 1 Score: 243 bits (620), Expect = 1.940e-71 Identity = 119/248 (47.98%), Postives = 165/248 (66.53%), Query Frame = 3 Query: 309 AKKPWGKFLDAGTGTHSLKWI-NTLETEGFTAVTADPQFADTTRKEIGFKVKAPDEIVVGNWRDEKFLEGRLFDTVLMDYLVGAIDGFAPYYQDQVFERLRRHVAPGGTIYLVGMQPLPDHPGGAAELVCEAARLRDSCILLAGHRPYREYPLDWITRQMKRSGMVVTAAKKMPVLYAPHTVKRQLDVASRKLPII--------AVTDPKLSTALEKHISDLGGRVRKELAGA--GERVEVGFDYVVA 1019
A +PWG+FLDAGTG+HSL+WI +T+ +TAVTA + A +R + ++ D++V+GNW DE FLEG ++D +L DYL+GA+DGF+PY QD +FERL+RH+AP G IY+VG++P+PD GAA+++CE RLRD+ ILLAGHR YREYPL WI RQ +R+G V + P+LY+ ++ RQLDV RKLP I A+ + L++ I D + + R+ GFDYVVA
Sbjct: 57 AARPWGRFLDAGTGSHSLQWIARNFDTDSWTAVTAAEEMAKQSRDSVKGHMREQDKVVIGNWDDETFLEGEVYDVILADYLIGAMDGFSPYTQDLIFERLKRHLAPDGVIYIVGLEPIPDTAEGAADVICEVRRLRDAMILLAGHRCYREYPLTWIYRQCRRAGFEVLESTTFPILYSRASITRQLDVGRRKLPYIRAKHGSSTAIAMGQACEMLQRRIDDATNHNTSKTSAVKTDTRIRFGFDYVVA 304
BLAST of mRNA_C-linearis_contig98.17141.1 vs. uniprot
Match: A0A7S3GT58_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GT58_9STRA) HSP 1 Score: 236 bits (602), Expect = 2.010e-69 Identity = 114/255 (44.71%), Postives = 164/255 (64.31%), Query Frame = 3 Query: 270 DALFRSIEVMQKSAKKPWGKFLDAGTGTHSLKWINTLETEGFTAVTADPQFADTTRKEIGF--KVKAPDEIVVGNWRDEKFLEGR-LFDTVLMDYLVGAIDGFAPYYQDQVFERLRRHVAPGGTIYLVGMQPLPDHPGGAAELVCEAARLRDSCILLAGHRPYREYPLDWITRQMKRSGMVVTAAKKMPVLYAPHTVKRQLDVASRKLPIIAVTDPKLSTALEKHISDLGGRVRKELAGAGERVEVGFDYVVAAE 1025
D LF++IE + K WGK LDAGTG HS+KWI L G+TA+TAD + KE G +++ D ++VGNW DE F EG FDT+L DYL+GA+DGF+PY QD++ +L+RH+ P G +Y++GM P+PD P ++ E R RD+CILL GHRPYRE+PLDW+ R + + VT +K +L++ + RQ+ V KL ++ D L + +EK++ DL R R+ + AG R+ + FDYV++AE
Sbjct: 8 DILFKTIEKFHGT--KAWGKILDAGTGVHSIKWIQGLTNSGWTAITADTGMRNQMMKESGVAAQMRPQDSVIVGNWMDEAFCEGLGTFDTILADYLIGAVDGFSPYQQDEILVKLKRHLTPEGRLYIIGMNPIPDEPAPPGNIISEIRRARDACILLGGHRPYREFPLDWMRRHLTSAQFSVTGSKNFTILHSEDSAVRQIRVGQSKLSLMDNAD--LRSGMEKYMVDLEARTRQAVRAAGGRIPLSFDYVISAE 258
BLAST of mRNA_C-linearis_contig98.17141.1 vs. uniprot
Match: A0A7S2XXT9_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXT9_9STRA) HSP 1 Score: 235 bits (600), Expect = 7.340e-69 Identity = 120/268 (44.78%), Postives = 172/268 (64.18%), Query Frame = 3 Query: 279 FRSIEVMQKSAKKPWGKFLDAGTGTHSLKWINTLETEG--------------FTAVTADPQFADTTRKE--IGFKVKAPDEIVVGNWRDEKFLEGRLFDTVLMDYLVGAIDGFAPYYQDQVFERLRRHVAPGGTIYLVGMQPLPDHPGGAAE-LVCEAARLRDSCILLAGHRPYREYPLDWITRQMKRSGMVVTAAKKMPVLYAPHTVKRQLDVASRKLPIIAVTDPKLSTALEKHISDLGGRVRKELAGA-GERVEVGFDYVVAAEL 1028
F I MQ+ KPWGKFLDAGTG HS+KW+++ G + VTA + A R++ + ++ D +V+GNW D L+G FDTVL DYL+GA+DGF+PY QD + RL++H+APG +Y++G++PLPD AE +VCE R+RD+CILLAGHR YRE+PL+W R + SG V +KK+P++Y+ ++KRQ+DVASRKLP D L + + +HI L RVR+ ++ RV +GFDY+++AE+
Sbjct: 21 FAEITRMQQECGKPWGKFLDAGTGLHSMKWVSSRGRSGGLDSNEDPVGGLESWCGVTASWEDAQKIRQDPQVSGVMQDSDSVVLGNWDDPDLLKGMTFDTVLADYLIGAMDGFSPYKQDLMLPRLKQHMAPGARLYIIGLEPLPDKSQNPAEDIVCEVRRVRDACILLAGHRCYREFPLEWTERHLTGSGFRVVESKKLPIMYSFQSIKRQIDVASRKLPFFK--DKALVSVMRQHIDQLTERVREAVSSTPNSRVRLGFDYIISAEV 286
BLAST of mRNA_C-linearis_contig98.17141.1 vs. uniprot
Match: A0A7S0XCK0_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XCK0_9STRA) HSP 1 Score: 231 bits (589), Expect = 3.720e-67 Identity = 115/255 (45.10%), Postives = 165/255 (64.71%), Query Frame = 3 Query: 270 DALFRSIEVMQKSAKKPWGKFLDAGTGTHSLKWINTLETEGFTAVTADPQFADTTRKEIGFKVKAPDEIVVGNWRDEKFLE--GRLFDTVLMDYLVGAIDGFAPYYQDQVFERLRRHVAPGGTIYLVGMQPLPDHPGGAAELVCEAARLRDSCILLAGHRPYREYPLDWITRQMKRSGMVVTAAKKMPVLYAPHTVKRQLDVASRKLPIIAVTDPKLSTALEKHISDLGGRVRKELAGAGE-RVEVGFDYVVAAE 1025
D LF ++E + + +PWG+FLDAGTG HSLKW+ TL TE +TA+TAD KE K + D ++VGNW D KF E G +DT+ DYL+GA+DGF+PY QD + +RLR HV+ G +Y++GM P+PDH AE++ E R RD+CI LAGHRPYRE+PL+W+ R ++ + + +K +L++ ++ RQL VA KL ++ L +E ++ DLG RV+ +A A R+ + FDYV+AAE
Sbjct: 3 DILFSTVE--RYHSPRPWGRFLDAGTGVHSLKWLQTLNTESWTAITADNYMRAQIEKEQDIKFRPVDRLLVGNWMDSKFCETLGE-YDTIFADYLIGAVDGFSPYEQDTIIKRLRNHVSENGRLYVIGMNPIPDHALQPAEVITEVRRARDACIQLAGHRPYREFPLNWMIRHLESAHFKILKSKSFTILHSEESILRQLRVAQSKLDLMP--HMSLRQGMELYLRDLGERVKSAIASAENGRIPLSFDYVIAAE 252
BLAST of mRNA_C-linearis_contig98.17141.1 vs. uniprot
Match: A0A2E7UX52_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7UX52_9DELT) HSP 1 Score: 229 bits (584), Expect = 4.020e-67 Identity = 127/258 (49.22%), Postives = 165/258 (63.95%), Query Frame = 3 Query: 264 TEDALFRSIEVMQKSAKKPWGKFLDAGTGTHSLKWINTLETEGFTAVTADPQFADTTRKEIGFK-VKAPDEIVVGNWRDEKFLEGRLFDTVLMDYLVGAIDGFAPYYQDQVFERLRRHVA-PGGTIYLVGMQPLPDH---PGGAAELVCEAARLRDSCILLAGHRPYREYPLDWITRQMKRSGMVVTAAKKMPVLYAPHTVKRQLDVASRKLPIIAVTDPKLSTALEKHISDLGGRVRKELAGAGERVEVGFDYVVAA 1022
TEDALF ++E ++ WG+ LDAGTG HSL+WI +LET G+TAVT + +G ++A D IV GNW DE L G +FD VL DYL+GAIDGFAPY+Q ++FERLR HV G +Y+VG++P PD PGG +LV E ARLRD+CILLAGHR YREYP +W+ R + ++G V +++ +P++Y V QLDV RKLP I TD L +L+ HI L R L G + G DYV+AA
Sbjct: 6 TEDALFSTLERFH--GERSWGRVLDAGTGMHSLQWIRSLETAGWTAVTGAVSRQQDLERRLGADGMRATDRIVTGNWTDEALLRGEVFDVVLADYLLGAIDGFAPYFQTRLFERLRSHVRRESGRLYVVGLEPYPDRAADPGG--QLVLEIARLRDACILLAGHRCYREYPREWVHRTLAQAGFEVDSSEAIPIVYRRRFVDGQLDVCVRKLPFI--TDLGLRASLKAHIESLRTRAHAHLLRVG-TIPFGADYVIAA 256 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig98.17141.1 >prot_C-linearis_contig98.17141.1 ID=prot_C-linearis_contig98.17141.1|Name=mRNA_C-linearis_contig98.17141.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=347bp MIQELNFSAGAGPRALQQQHQQPANPTLPRAASGLALAFFWGFGGGFAGLback to top mRNA from alignment at C-linearis_contig98:562512..570279+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig98.17141.1 ID=mRNA_C-linearis_contig98.17141.1|Name=mRNA_C-linearis_contig98.17141.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7768bp|location=Sequence derived from alignment at C-linearis_contig98:562512..570279+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig98:562512..570279+ >mRNA_C-linearis_contig98.17141.1 ID=mRNA_C-linearis_contig98.17141.1|Name=mRNA_C-linearis_contig98.17141.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2082bp|location=Sequence derived from alignment at C-linearis_contig98:562512..570279+ (Chordaria linearis ClinC8C monoicous)back to top |