mRNA_C-linearis_contig98.17139.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig98.17139.1
Unique NamemRNA_C-linearis_contig98.17139.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig98.17139.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 6.040e-15
Identity = 44/89 (49.44%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   13 NRAG-AVDTLIEVGADVWLKEAGGVTPLAITPYYGSYKAMLPLLQDRAKVDDQ-DTNGGTPLHRSCFGRGEGLEAVVDLLLRWGADETA 273
            +RAG AV  L++  AD  LK  GG TPL     +     +  LLQ+ A V ++ D  G TPLHR+C  + EGL A +DLLLRWGADETA
Sbjct:  285 DRAGPAVHMLVKARADTELKSVGGWTPLHAAAEHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETA 373          
BLAST of mRNA_C-linearis_contig98.17139.1 vs. uniprot
Match: A0A6H5JWW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 8.240e-12
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1
Query:  121 KAMLPLLQDRAKVDDQDTNGGTPLHRSCFGRGEGLEAVVDLLLRWGADETALD-DGK 288
            KAM  LL   A +  QD +G TPLH +C+ +  GLEA VDLLLRWGADETAL+ DGK
Sbjct:  534 KAMNTLLGHGASLTAQDVDGNTPLHLACYRQDSGLEAPVDLLLRWGADETALNNDGK 590          
BLAST of mRNA_C-linearis_contig98.17139.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.080e-11
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1
Query:  121 KAMLPLLQDRAKVDDQDTNGGTPLHRSCFGRGEGLEAVVDLLLRWGADETALDD 282
            KAM  LL   A +  QDT G TPLH +C+ + +GLEA VDLLLRWGADETAL++
Sbjct:  320 KAMHTLLWHGASLTAQDTEGNTPLHVACYRQHKGLEAPVDLLLRWGADETALNN 373          
BLAST of mRNA_C-linearis_contig98.17139.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.830e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   25 AVDTLIEVGADVWLKEAG---GVTPLAITPYYGSYKAMLPLLQDRAKVDDQDTNGGTPLHRSCFGRGEGLEAVVDLLLRWGADETALD 279
            AVD L++ GADV  K      G TPL++     S +A++ LL+    V+D +  G + LH +C     G++ +VDLLLRWGA ETA++
Sbjct:  288 AVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSCEAVVALLKRGGNVNDTNCGGLSALHLTCGSLSRGMDRMVDLLLRWGASETAVN 375          
BLAST of mRNA_C-linearis_contig98.17139.1 vs. uniprot
Match: A0A6H5KFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 7.830e-11
Identity = 42/94 (44.68%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    1 AAEFNRAGAVDTLIEVGADVWLKEAGGVTPLAITPYYGSYKAMLPLLQDRAKVDDQDT-NGGTPLHRSCFGRGEGLEAVVDLLLRWGADETALD 279
            AA  N A A+  L + G  +  +   G TPL    + GS +AML LLQ  A V+ ++T NG +PL  +C    EG     DLLLRWGADETA+D
Sbjct:   99 AALHNNAAAMPALFKAGVYIEGRSPKGRTPLQNAAFCGSCEAMLALLQLGANVNSKNTINGLSPLCSACR---EGHHDAADLLLRWGADETAVD 189          
BLAST of mRNA_C-linearis_contig98.17139.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 9.690e-11
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1
Query:   10 FNRAGAVDTLIEVGADVWLKEAGGVTPLAITPYYG-SYKAMLPLLQDRAKVDDQDTNGGTPLHRSCFGRGEGLEAVVDLLLRWGADETALDDG 285
             N+AGA+D L++ GAD+  K  G  TPL +   +G S +A+  LL+   +V        T LH +C     G +A+VDLLLRWG  E  LD G
Sbjct:  279 MNQAGAMDVLLDAGADMDRKCYGASTPLCVAIEFGASVQAVHTLLRRGCQVSGPMDK--TMLHLACMTMAPGFDAIVDLLLRWGVSELTLDKG 369          
BLAST of mRNA_C-linearis_contig98.17139.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.310e-10
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 1
Query:    1 AAEFNRAGAVDTLIEVGADVWLKEAGGV----TPLAITPYYGSYKAMLPLLQDRAKVDDQDTNGGTPLHRSCFGRGEGLEAVVDLLLRWGADETALD 279
            AA  N+A AV+ L+E GAD  ++   G     TPL       S +A+  LL++ A  +  D NG  PLH +   +  G+  VVDLLLRWGA ETA++
Sbjct:  209 AALDNQAEAVEVLLEAGADADVESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADPNKPDDNGSMPLHLAAHEQTPGVMEVVDLLLRWGASETAVN 305          
BLAST of mRNA_C-linearis_contig98.17139.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 4.650e-10
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1
Query:  127 MLPLLQDRAKVDDQDTNGGTPLHRSCFGRGEGLEAVVDLLLRWGADETALDDG 285
            M  L Q  A+V  +   G TPLH +C+ R EGLEA VD+LLRWGADET L+ G
Sbjct:    1 MHALFQHGAQVGVRGNQGYTPLHETCWERHEGLEAAVDMLLRWGADETTLNYG 53          
BLAST of mRNA_C-linearis_contig98.17139.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.160e-9
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 1
Query:    1 AAEFNRAGAVDTLIEVGADVWLKEAGGVTPLAITPYYGSYKAMLPLLQDRAKVDDQDTNGGTPLHRSCFGRG-EGLEAVVDLLLRWGADETALD-DGK 288
            AA  NR  A+D L+E GA V +++    TP         ++A L L +  A ++ +D  G TPL  +    G +G+ A+VD+LLR GADETAL+ DG+
Sbjct:  195 AALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGR 292          
BLAST of mRNA_C-linearis_contig98.17139.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 2.940e-9
Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 1
Query:    1 AAEFNRAGAVDTLIEVGADVWLKEAGGVTPLAITPYYGSYKAMLPLLQDRAKVDDQDTNGGTPLHRSCFGRG-EGLEAVVDLLLRWGADETALD-DGK 288
            AA  NR  A+D L+E GA V +++    TP         ++A L L +  + ++ +D  G TPL  +    G +G+ A+VD+LLR GADETAL+ DG+
Sbjct:  146 AALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACINHCHEAALALYKHGSNIEARDIRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGR 243          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLL7_ECTSI6.040e-1549.44Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JWW4_9PHAE8.240e-1261.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS36_ECTSI1.080e-1161.11Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K1F4_9PHAE3.830e-1140.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFY7_9PHAE7.830e-1144.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBP9_ECTSI9.690e-1140.86Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7FSI6_ECTSI2.310e-1041.24Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LNI8_ECTSI4.650e-1056.60EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KNU3_9PHAE1.160e-939.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6X8_ECTSI2.940e-938.78Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig98contigC-linearis_contig98:517183..517473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue8.2e-13
Seed eggNOG ortholog2880.D7FLL7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930843.9244552-CDS-C-linearis_contig98:517182..5174731622930843.9244552-CDS-C-linearis_contig98:517182..517473Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 517183..517473 -
1690881278.5355005-CDS-C-linearis_contig98:517182..5174731690881278.5355005-CDS-C-linearis_contig98:517182..517473Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 517183..517473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig98.17139.1prot_C-linearis_contig98.17139.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig98 517183..517473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig98.17139.1

>prot_C-linearis_contig98.17139.1 ID=prot_C-linearis_contig98.17139.1|Name=mRNA_C-linearis_contig98.17139.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=97bp
AAEFNRAGAVDTLIEVGADVWLKEAGGVTPLAITPYYGSYKAMLPLLQDR
AKVDDQDTNGGTPLHRSCFGRGEGLEAVVDLLLRWGADETALDDGK*
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mRNA from alignment at C-linearis_contig98:517183..517473-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig98.17139.1 ID=mRNA_C-linearis_contig98.17139.1|Name=mRNA_C-linearis_contig98.17139.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at C-linearis_contig98:517183..517473- (Chordaria linearis ClinC8C monoicous)
GCTGCTGAATTCAACCGAGCGGGTGCCGTGGATACGCTCATTGAGGTTGG GGCCGATGTCTGGCTCAAGGAGGCCGGTGGGGTCACGCCTCTTGCAATTA CCCCGTATTACGGCAGTTACAAAGCAATGCTTCCGCTGTTGCAGGACAGG GCAAAGGTTGACGATCAAGACACTAACGGAGGTACGCCGCTGCACCGATC TTGCTTCGGGCGTGGCGAAGGGCTAGAAGCGGTGGTGGATCTTCTTTTGC GATGGGGAGCAGACGAGACAGCCTTGGACGACGGAAAATGA
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Coding sequence (CDS) from alignment at C-linearis_contig98:517183..517473-

>mRNA_C-linearis_contig98.17139.1 ID=mRNA_C-linearis_contig98.17139.1|Name=mRNA_C-linearis_contig98.17139.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at C-linearis_contig98:517183..517473- (Chordaria linearis ClinC8C monoicous)
GCTGCTGAATTCAACCGAGCGGGTGCCGTGGATACGCTCATTGAGGTTGG
GGCCGATGTCTGGCTCAAGGAGGCCGGTGGGGTCACGCCTCTTGCAATTA
CCCCGTATTACGGCAGTTACAAAGCAATGCTTCCGCTGTTGCAGGACAGG
GCAAAGGTTGACGATCAAGACACTAACGGAGGTACGCCGCTGCACCGATC
TTGCTTCGGGCGTGGCGAAGGGCTAGAAGCGGTGGTGGATCTTCTTTTGC
GATGGGGAGCAGACGAGACAGCCTTGGACGACGGAAAATGAGCTGCTGAA
TTCAACCGAGCGGGTGCCGTGGATACGCTCATTGAGGTTGGGGCCGATGT
CTGGCTCAAGGAGGCCGGTGGGGTCACGCCTCTTGCAATTACCCCGTATT
ACGGCAGTTACAAAGCAATGCTTCCGCTGTTGCAGGACAGGGCAAAGGTT
GACGATCAAGACACTAACGGAGGTACGCCGCTGCACCGATCTTGCTTCGG
GCGTGGCGAAGGGCTAGAAGCGGTGGTGGATCTTCTTTTGCGATGGGGAG
CAGACGAGACAGCCTTGGACGACGGAAAATGA
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