mRNA_C-linearis_contig98.17136.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig98.17136.1 vs. uniprot
Match: D8LJU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU7_ECTSI) HSP 1 Score: 202 bits (515), Expect = 2.790e-55 Identity = 199/476 (41.81%), Postives = 245/476 (51.47%), Query Frame = 1 Query: 1 MPSSSNRLLNLFQLELKEGSSSSASRAPSHGANSAD-PVKSD-PSRTKRTRESITLEKSDFVSPLEDHDEIADAAARRTTKTRVXXXXXXXXXXLREQLKFQGAVLDQLSGEVYKLERMAAAVNEGPHDTWDESKPDEQDTHKRAKDQPNKELNCAVRGEDEDGPEGLLVKSVRQESRGESEGRDDLR---------DGSLEHGQNEEEDDAGGSSEGDPGKKHASASVSNRP------GRRGEPLDEHTNKGPELPGMVSGEQLSPPQQAALQRSLP--KSPAGNCKARNEEPVASEG-AQLRSELREARSLAERIRGELSAAQQMAEEDNMSHVTLLARERKFRAAIEAGLREKVHIMRRRARDREERLSAELSSARAQLRETVDLLATKEEEACSARTRWAQQEEIAAATLAKNKERERHASWLERRLEEVSSVEATAAALRLEEMTAVLESQQRELELLRPSKRPIPSAREH 1368
MPSS NRLL+LF+ E ++ S SS RAPSHGAN+A+ VK D P TK ++ + V E A A A T+ RV LREQLKFQGAVLDQL+G+V+ LE A G TH R N+E +R ++G V QE++ D+ DG HG+ D+ D N P R D H P+ P + + + L++ LP SP G EP + + LRSELR AR L ERIRG+ +AAQ+ AEE SH+ LL+RERKFRA +EAGLREKVH MR+RARDREERLSAELSS +AQL+E VDLLATKE A+ KER+R SWLERRL+EVSS E +AA LRLEEMTA LE+QQ+ELE LR S R + S H
Sbjct: 1 MPSS-NRLLDLFRSE-QDVSPSSMGRAPSHGANNANNSVKQDLPQVTKGRAGYGNVQGIEVV-------ETAVAFAAGGTRPRVETKLERENAHLREQLKFQGAVLDQLAGDVHTLELKAVGAASGA-------------THLRPSPIHNQEATDVLREGPKNGMSQGQKDEVHQENQEAGARCPDMCKGGTQGAHIDGEDPHGEVRNVDERDTFQPQDTADDLGQGHRGNTPPTPVQHARDESACDPHEK--PDFPLETASDHV-------LRKVLPTSSSPTGG------EPDSGDNDTDLRSELRAARLLTERIRGDFAAAQKAAEEKEQSHIGLLSRERKFRATVEAGLREKVHSMRQRARDREERLSAELSSVKAQLKEAVDLLATKEXXXXXXXXXXXXXXXXXXXXXARGKERDRQMSWLERRLQEVSSGETSAATLRLEEMTAALEAQQQELERLRASAREVESHYNH 439
BLAST of mRNA_C-linearis_contig98.17136.1 vs. uniprot
Match: A0A6H5KMY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMY3_9PHAE) HSP 1 Score: 177 bits (448), Expect = 2.930e-45 Identity = 195/519 (37.57%), Postives = 244/519 (47.01%), Query Frame = 1 Query: 73 SRAPSHGANSADPVKSDPSRTKRTRESI-TLEKSDFVSPLEDHDEIADAAARRTTKTRVXXXXXXXXXXLREQLKFQ----------------------GAVLDQLSGEVYKLERMAAAVNEGPHDTWDESKPDEQDTHKRAKDQPNKELNCAVRGEDEDGPEGLLV---KSVRQESRGESEGRDDLRDGSLEHGQNEEEDDAG------------------GSSEGDPGKKHASASVSNRPGRRGEPLDEHTNKGPELPGMVSGEQLSPPQQAALQRSLPKSPAGNCKARNEEPVASEGAQLRSELREARSLAERIRGELSAAQQM---AEEDNMSHVTLLARERKFRAAIEAGLREKVHIMRRRARDREERLSAELSSARAQLRETVDLLATKEEEAC------------SARTRWAQQEEIAAATLAKNKERERHASWLERRLEEV----------------------------------SSVEATAAALRLEEMTAVLESQQRELELLRPSKRPI 1350
SRAPSHGAN+A+ VK D R + R + + V P A A A T+ V LREQLKFQ GAVLDQL+G+V+ LE AAA G TH R N+E V E G EG+ V QE+ E D+ +G + Q + ED G ++G G ++ R +P ++ P+ P + +Q+ ++ L S SPAG E LRSELR AR L ERIRG+ +AAQ+ AEE SH+ LL+RERKFRA +EAGLREKVH MRRRARDREERLSAELSS +AQL+E +DLLATKE+E S R R A+QE+ +A LA+ KER+R SWLERRL+EV SS E +AA LRLEEMT VLE+QQ+ELE LR S R +
Sbjct: 7 SRAPSHGANNANSVKQDLPRVTKGRAGYGNVHGIEVVEP-------AVAFAAGGTRPPVATKLERENAHLREQLKFQVPGLLSHVNRYATSITPFLLMQGAVLDQLAGDVHTLELKAAAAASGA-------------THLRPSPIHNQEAKDVVL-EGPVGSEGMAQGPKDEVHQENHEAGERCPDMSEGGTQGAQIDGEDPHGELRDVDERYVIQRKDTADDLAQGHRGNTPPTSVQHERVESARDPYEK-----PDCPIETASDQVL--REVVLASS---SPAGG-----ERDSGDNKTDLRSELRAARLLTERIRGDFAAAQKALPRAEEKEQSHIDLLSRERKFRATVEAGLREKVHSMRRRARDREERLSAELSSVKAQLKEAMDLLATKEDELTKKLRNISPYKVRSMRARNAEQEDRTSAALARGKERDRQMSWLERRLQEVDSSASPLQFLAKDTFYTCQIKAQLNGARRKTCLVSSGETSAATLRLEEMTVVLEAQQQELERLRASAREV 489 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig98.17136.1 >prot_C-linearis_contig98.17136.1 ID=prot_C-linearis_contig98.17136.1|Name=mRNA_C-linearis_contig98.17136.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=471bp MPSSSNRLLNLFQLELKEGSSSSASRAPSHGANSADPVKSDPSRTKRTREback to top mRNA from alignment at C-linearis_contig98:487236..490974- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig98.17136.1 ID=mRNA_C-linearis_contig98.17136.1|Name=mRNA_C-linearis_contig98.17136.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3739bp|location=Sequence derived from alignment at C-linearis_contig98:487236..490974- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig98:487236..490974- >mRNA_C-linearis_contig98.17136.1 ID=mRNA_C-linearis_contig98.17136.1|Name=mRNA_C-linearis_contig98.17136.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2826bp|location=Sequence derived from alignment at C-linearis_contig98:487236..490974- (Chordaria linearis ClinC8C monoicous)back to top |